NO01G00610, NO01G00610 (gene) Nannochloropsis oceanica

Overview
NameNO01G00610
Unique NameNO01G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length579
Alignment locationchr1:162346..162924 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:162346..162924 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016884carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR003789Asn/Gln_tRNA_amidoTrfrase-rel
IPR019004Uncharacterised_YOR215C_mit
Homology
BLAST of NO01G00610 vs. NCBI_GenBank
Match: EWM28987.1 (hypothetical protein Naga_100501g4 [Nannochloropsis gaditana])

HSP 1 Score: 251.5 bits (641), Expect = 2.100e-63
Identity = 144/191 (75.39%), Postives = 159/191 (83.25%), Query Frame = 0
Query:    2 KLLLPVLVIFALASTSTAFLLPSCPIPSTFSWSSSSSNTRLGASIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEMLG 193
            K  L + +I A  +T +AFLL     P+T        +TRL ASIY+D+N A+KQAMKDK KEKLSALRNIKSA G ALKEEGAAE+LPDEKAI ILTKLRKQR ESIEMF KGNRDDMVQAE+AELAILE YLPQLADEATTREWV+AAI E+GA AKSDMGKVMGVMMK++KGKTDNKLVSKLVGEMLG
Sbjct:    7 KSWLSIALILACMTTPSAFLLAP---PTTHLVKHYQGSTRLSASIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLG 194          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: XP_005855957.1 (hypothetical protein NGA_0547000 [Nannochloropsis gaditana CCMP526] >EKU20400.1 hypothetical protein NGA_0547000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.1 bits (562), Expect = 3.000e-54
Identity = 119/135 (88.15%), Postives = 126/135 (93.33%), Query Frame = 0
Query:   58 MKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEMLG 193
            MKDK KEKLSALRNIKSA G ALKEEGAAE+LPDEKAI ILTKLRKQR ESIEMF KGNRDDMVQAE+AELAILE YLPQLADEATTREWV+AAI E+GA AKSD+GKVMGVMMK++KGKTDNKLVSKLVGEMLG
Sbjct:    1 MKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDVGKVMGVMMKRYKGKTDNKLVSKLVGEMLG 135          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: CBN73973.1 (GatB/YqeY [Ectocarpus siliculosus])

HSP 1 Score: 147.9 bits (372), Expect = 3.200e-32
Identity = 79/156 (50.64%), Postives = 107/156 (68.59%), Query Frame = 0
Query:   36 SSSNTRLGASIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+S+T L   ++DD+ A MK +MK   K KL  LR +++AF T  K  G+ + LPDEK IAIL K+ KQ+ ESI+M++KG RDD+V+ E     +++A LPQLADEATT++WV  AI  +GAK  SDMGKVMG++MK HK + D  L  +LV   L
Sbjct:   53 SASSTSLSMGVFDDVTAEMKASMKSGDKPKLEGLRMVRAAFLTETKAAGSGDKLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKETKTKQLIDAMLPQLADEATTQKWVDEAIASAGAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 208          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: OSX74155.1 (hypothetical protein BU14_0306s0033 [Porphyra umbilicalis])

HSP 1 Score: 124.8 bits (312), Expect = 2.900e-25
Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = 0
Query:   46 IYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            I  D+   MK AMK K  + L  LRN+++AF TA KE G A++L D  A+A L +L KQR +SIEM++ G R D+ +AE+ EL++++ YLP  ADEATTR WV  AI   GA    D+GKVMG +MK H+ + D  LV K+  E+L
Sbjct:    3 IATDVTERMKVAMKAKDADTLRVLRNMRAAFLTAQKETG-ADTLDDAAAVACLKRLVKQRNQSIEMYETGGRTDLAEAEKFELSLIQTYLPSTADEATTRGWVEEAIAAIGATKPGDVGKVMGAVMKGHRSEVDGALVKKVAAELL 147          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_069800227.1 (GatB/YqeY domain-containing protein [Tepidibacillus sp. HK-1] >GAU63984.1 glutamyl-tRNA(Gln) amidotransferase subunit E [Tepidibacillus sp. HK-1])

HSP 1 Score: 112.1 bits (279), Expect = 2.000e-21
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+ D I+  MKQAMK+K K KLS +R I+SA      E     +L DE+ + +LT+  KQR +S++ F+K  R D+V+  QAEL IL+ YLPQ   E   R  + + I+E GAK KSDMGKVM  +M K KG+ D KL+++LV E L
Sbjct:    2 SLMDRISEDMKQAMKNKDKVKLSVIRMIRSAI--KYTEIEKQTTLSDEQILDVLTREVKQRRDSLQEFEKAGRQDLVENVQAELEILKQYLPQQLSEQELRNIIQSVIEEIGAKGKSDMGKVMSAVMPKVKGRADGKLINQLVQEYL 146          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_068723364.1 (GatB/YqeY domain-containing protein [Tepidibacillus decaturensis] >KXG43180.1 aspartyl-tRNA amidotransferase [Tepidibacillus decaturensis])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+ D I+  MKQAMK+K K KLS +R I+SA      E     +L DE+ + +LT+  KQR +S++ F+K  R D+V+  QAEL IL+ YLPQ   E   R  + + I+E GAK KSDMGKVM  +M K KG+ D KL+++LV E L
Sbjct:    2 SLMDRISEDMKQAMKNKDKLKLSVIRMIRSAI--KYTEIEKQTTLSDEQILDVLTREVKQRRDSLQEFEKAGRQDLVENVQAELEILKQYLPQQLSEQELRNIIQSVIEEIGAKGKSDMGKVMSAVMPKVKGRADGKLINQLVQEYL 146          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_066396290.1 (GatB/YqeY domain-containing protein [Fictibacillus phosphorivorans] >ANC77921.1 hypothetical protein ABE65_014410 [Fictibacillus phosphorivorans])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 63/147 (42.86%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+ +++N  MKQAMKDK K+KLS +R +K++      ++G    L +E+ + +L +  KQR +S++ F+K  RDD+V   Q E+A+L  YLP+   E   +E VA  I E GA +K+DMGKVMG +M K KGK D  LV+++V + L
Sbjct:    2 SLLNELNQDMKQAMKDKNKQKLSVIRMLKASLQNEAIKQG--RELNEEEELTVLVREMKQRKDSLQEFEKAGRDDLVAGLQDEIAVLTPYLPKQLSEEELQEIVAQTISEIGASSKADMGKVMGALMPKVKGKADGGLVNRIVQQQL 146          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_101074393.1 (glutamyl-tRNA amidotransferase [Rhodohalobacter barkolensis] >PKD42698.1 glutamyl-tRNA amidotransferase [Rhodohalobacter barkolensis])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAF--GTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            SI + I   +K AMK K  ++L  LR++K+        + +G    + DE+A+ +L K  KQR ESI+ F+KG R D+V+ E+ EL I+E+YLP++ D+   RE V   ID+ GA + +DMG+VMGVMM K KGK D   VS++V E L
Sbjct:    2 SIKEKILNDLKAAMKAKEADRLRVLRSLKAKILEKEISERKGGEAEITDEQAVEVLMKAAKQRKESIDQFEKGGRTDLVEKEEEELKIIESYLPEMMDDDAIREAVKQQIDQMGASSMADMGQVMGVMMSKLKGKADGSAVSRIVKEEL 150          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_007504949.1 (GatB/YqeY domain-containing protein [Caldalkalibacillus thermarum] >EGL82662.1 hypothetical protein CathTA2_1818 [Caldalkalibacillus thermarum TA2.A1])

HSP 1 Score: 110.9 bits (276), Expect = 4.400e-21
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+ D +N  MKQAMK+K K +LS +R +K+A     +E     +L D+  + +L++  KQR ES++ F+K  RDD+V+    E+A+LE YLP+   E   R+ V+  I E GA +K+DMGKVM  +M K KGK D  LV++LV E L
Sbjct:    2 SLVDQLNNDMKQAMKNKEKTRLSVIRMVKAALKN--EEIKLGRALTDDDVLTVLSREMKQRKESLQEFEKAGRDDLVETLNQEIAVLETYLPEQLSEDELRQLVSDTIAEVGATSKADMGKVMSAIMPKVKGKADGSLVNRLVQEAL 146          
BLAST of NO01G00610 vs. NCBI_GenBank
Match: WP_084373109.1 (GatB/YqeY domain-containing protein [Reichenbachiella faecimaris] >SMD35351.1 hypothetical protein SAMN04488029_2465 [Reichenbachiella faecimaris])

HSP 1 Score: 110.9 bits (276), Expect = 4.400e-21
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 0
Query:   45 SIYDDINAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTKLRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAAAIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEML 192
            S+ D INA +K AM  K KEKL+ALR+IKS    A  E+GA+E + ++  + +L K  KQR +S+++F++  RDD+   EQ ELAI+  YLP+   E   +  +   ID++GA    DMGKVMG+  K   GK D K +S LV  +L
Sbjct:    2 SLKDQINADIKAAMLAKEKEKLTALRSIKSMILLAETEKGASEGISEDAEMKLLMKAAKQRKDSVDLFREQGRDDLADKEQGELAIINQYLPKQLSEEELKAELQKVIDQAGASGPQDMGKVMGMATKALAGKADGKTISALVKTLL 148          
The following BLAST results are available for this feature:
BLAST of NO01G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28987.12.100e-6375.39hypothetical protein Naga_100501g4 [Nannochloropsi... [more]
XP_005855957.13.000e-5488.15hypothetical protein NGA_0547000 [Nannochloropsis ... [more]
CBN73973.13.200e-3250.64GatB/YqeY [Ectocarpus siliculosus][more]
OSX74155.12.900e-2548.63hypothetical protein BU14_0306s0033 [Porphyra umbi... [more]
WP_069800227.12.000e-2146.94GatB/YqeY domain-containing protein [Tepidibacillu... [more]
WP_068723364.12.600e-2146.94GatB/YqeY domain-containing protein [Tepidibacillu... [more]
WP_066396290.12.600e-2142.86GatB/YqeY domain-containing protein [Fictibacillus... [more]
WP_101074393.12.600e-2143.62glutamyl-tRNA amidotransferase [Rhodohalobacter ba... [more]
WP_007504949.14.400e-2143.54GatB/YqeY domain-containing protein [Caldalkalibac... [more]
WP_084373109.14.400e-2143.54GatB/YqeY domain-containing protein [Reichenbachie... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL004nonsL004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR088ngnoR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008325NSK008325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00610.1NO01G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575990gene_38Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100501g4gene1628Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00610.1NO01G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00610 ID=NO01G00610|Name=NO01G00610|organism=Nannochloropsis oceanica|type=gene|length=579bp
ATGAAACTCCTACTTCCGGTCCTCGTCATCTTCGCCTTGGCCAGCACTTC
CACGGCCTTTCTCCTCCCGTCCTGCCCCATCCCTTCCACGTTCAGCTGGA
GCAGCAGCAGCAGCAACACCCGCCTCGGTGCATCCATCTACGACGACATC
AATGCCGCCATGAAGCAAGCTATGAAGGATAAGGCTAAGGAAAAGCTCAG
TGCTTTGCGCAACATCAAATCTGCCTTTGGAACGGCCCTCAAAGAGGAAG
GCGCTGCTGAGTCGCTGCCGGACGAGAAGGCCATTGCAATTCTTACCAAG
CTTCGCAAACAAAGGCTAGAGAGCATCGAGATGTTCCAGAAAGGCAATCG
TGATGACATGGTACAGGCCGAACAAGCCGAGCTGGCCATCTTGGAGGCAT
ACTTGCCTCAGCTGGCTGATGAGGCCACGACGAGGGAGTGGGTCGCTGCT
GCCATCGACGAAAGCGGGGCCAAAGCCAAGAGTGACATGGGGAAGGTGAT
GGGGGTGATGATGAAGAAGCACAAGGGGAAGACGGACAACAAATTGGTAT
CGAAGCTGGTGGGGGAGATGCTGGGGTAG
back to top

protein sequence of NO01G00610.1

>NO01G00610.1-protein ID=NO01G00610.1-protein|Name=NO01G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MKLLLPVLVIFALASTSTAFLLPSCPIPSTFSWSSSSSNTRLGASIYDDI
NAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTK
LRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAA
AIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEMLG*
back to top
Synonyms
Publications