NO01G00550, NO01G00550 (gene) Nannochloropsis oceanica

Overview
NameNO01G00550
Unique NameNO01G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2376
Alignment locationchr1:147776..150151 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:147776..150151 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00550 vs. NCBI_GenBank
Match: EWM28998.1 (hypothetical protein Naga_100373g6 [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-13
Identity = 101/247 (40.89%), Postives = 129/247 (52.23%), Query Frame = 0 
Query:  460 QVRFSDVDRIVLIPARCDYDEETKELLWWALEDYVGFKKRSLRLLNMGKKEFVTLDPIELKWE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVTDRAQSVMMGEGERGCSPSPATDQPSSRESSSSVDSSIPVRLMKALSGEEIDLSVSAQLKEGGRGGGNASSSPLLTRGLVEETSGPVPSIYSFISHNTPSHLLTLPHGRTRAHRRYSSLSSSPVEG 703
            +V FS+V+R+VLIPA  D D  TK+ L+W L DYV FK R+LRL+ +GKK F+ LD IEL WE                 XXXXXXXXXXXXXXXXXXXXXXX                P+      V     E    P PAT  PS    + +  + +P  + + +    +  S SA  ++ G       ++ LL   LV+  S P PS+ S++SH  PSHL        + HRRYSSL SSP EG
Sbjct:  472 RVHFSEVERVVLIPALGDMDAGTKDALFWGLMDYVAFKDRTLRLMGLGKKNFMELDAIELVWEAEDRGEELTLAEAEEMLXXXXXXXXXXXXXXXXXXXXXXXQAQGTAGKAVETGLVAPLPIAVVEVEAAALEPSLIPRPAT--PSPPLGAPAPTAHLPPEVSEGV----LRRSTSASSEDVG-------TALLLHDTLVDPPSFP-PSLGSYLSHENPSHL-----RHRQRHRRYSSLCSSPAEG 699
The following BLAST results are available for this feature:
BLAST of NO01G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28998.11.200e-1340.89hypothetical protein Naga_100373g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL004nonsL004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR088ngnoR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008316NSK008316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00550.1NO01G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575974gene_32Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100373g6gene1618Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00550.1NO01G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00550 ID=NO01G00550|Name=NO01G00550|organism=Nannochloropsis oceanica|type=gene|length=2376bp
ATGTTGAACCGTCGCCAGGCCTTCCGCCGCTGCAAGGTCCGCCGGAGGCA
TGCCAGCTATGGTACAGCACTAGCTCCCACCCCTACAAGTAGCCCCCCCA
AAATCACCGCCACGGACGCGATAAAGCGGTGTGGAAGCCAAGACAGCTAT
ACCAGCACCTGCTGCAGCAACTCGAGTTGCAGTGATCGCAGCAGTGGGAG
CACGAGTGACGGGCCCGAGGGCCAAAGCCAAGGTTCATCTCCTCCTGACA
GCCCGCTGTCGGGAGATATGAGAATGGAGGGCATGGGCCTCGGCGGTATC
ATGCTAGGCTCCCCTTCGTCCACCACCTCCTCCTCCTCGTCCTCTCCCTT
GTCCTACTCTCACGATCAAGCGCGGTTGTCACCACCTCCACGCGTTCCAG
GACCAGGACCATATTCCATCCTGTCGTTGCCACCCTCCCCGCTACTCCGG
GACGAGGCAGAGAGGAACCCTCCGCCACCATCATCACTTCCGACCATGCA
GCCACAAGATACAGAATGGCAGCAGAGACACCAGACACCTAGCAGTAGTA
CCAGCAGTAGTACCAGCAGCAGCCGCAACAGCAGCAGTGGCTTCAGCAGT
TGCAGTTCGAGAAGCAGCAACAGCAACAGCAGCAGTAGCAGCAGCACCAG
CAGGGGAGGGGGCTCGCGCTTGGCACGATGGTGGCATCTGTTGGGTCATC
CTACTTTCCTCTCTCCCCTCGCACTCTGGTCTAGCCCTGTCTACTACTGC
GACCTTCCCCCACTCCGTCGCCCGCGTCGCTCGCATCGATCACCGTCCTG
CCGTGCTCCTGCAGCCTGGGAGGGAGGAACAAAAAAGGACGTTCACGTGG
TCGTCGATGGGACGAAGAGCGGAGCAGGAATGCCGCCCCCTGCCTTGGCT
CTACCACCGCCGGCCCACTTCTCGACGCGGAGCAAGGAAGGAGCAGCAAC
AGCGGCATCAGCAGCAGTAGCAGCAGCAGCAGGAGCAGCCTCAGGACGGC
TGGGTTTGCCTTCCTCCTCATTTGTAACTTCGGATCGCGGCAGCTGTAGC
GTCAGCTGTGCCCCGGCAGGCGCGGGGTACATGGATGCGGGATTGGACGG
CAAGTGGCTTGAAGGAGAGGAGGAGGAAGATGGAGGATGGGAGGGAGGGA
AAGAGGAAGGGAGGGAGGGAGGAGAGCCGGAGGAAGAACGGCCCACGTCA
GCGGCGAGGAGGGAGGGAATTAAGGAGGGTGAGGTTGATGATGACGGTGA
TGAGGAGGAGGAGATTGATAACATTTCCCCTCTCTCAGGGGCCGCCTCTT
TTTTCTCTCCATTCACAGAGGATGAGGAGGAGGCAGAGGAGGAGGATGAG
GCGGATGAGGAGGAAGAGGATCCGGCACAGGTTCGTTTTTCGGATGTGGA
CCGCATTGTATTAATCCCCGCAAGATGTGATTACGACGAGGAGACGAAGG
AGCTGTTGTGGTGGGCTTTGGAAGACTATGTGGGTTTCAAGAAGAGGAGC
CTGAGGCTTTTGAATATGGGGAAGAAGGAGTTTGTGACGTTGGACCCGAT
TGAGCTGAAGTGGGAGGAGGAGGAGAGGCGCATGGAGGGACGGGAGGTGG
AGGAGGAAGAGGAGGAGGAAGAGGAGGATGACAAGAAAGAAAAAGAAGAA
GAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGA
GGAGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCAGTCTGTGA
TGATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAA
CCTTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCG
GCTCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTC
AGTTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTC
CTCACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTA
TTCGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACG
GCCGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTT
GAGGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTC
GAGCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAG
CAGCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCC
ACAGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATC
CGGCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAA
TGGAGTTGAGTCAGTCGCAGGCCTAG
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protein sequence of NO01G00550.1

>NO01G00550.1-protein ID=NO01G00550.1-protein|Name=NO01G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=792bp
MLNRRQAFRRCKVRRRHASYGTALAPTPTSSPPKITATDAIKRCGSQDSY
TSTCCSNSSCSDRSSGSTSDGPEGQSQGSSPPDSPLSGDMRMEGMGLGGI
MLGSPSSTTSSSSSSPLSYSHDQARLSPPPRVPGPGPYSILSLPPSPLLR
DEAERNPPPPSSLPTMQPQDTEWQQRHQTPSSSTSSSTSSSRNSSSGFSS
CSSRSSNSNSSSSSSTSRGGGSRLARWWHLLGHPTFLSPLALWSSPVYYC
DLPPLRRPRRSHRSPSCRAPAAWEGGTKKDVHVVVDGTKSGAGMPPPALA
LPPPAHFSTRSKEGAATAASAAVAAAAGAASGRLGLPSSSFVTSDRGSCS
VSCAPAGAGYMDAGLDGKWLEGEEEEDGGWEGGKEEGREGGEPEEERPTS
AARREGIKEGEVDDDGDEEEEIDNISPLSGAASFFSPFTEDEEEAEEEDE
ADEEEEDPAQVRFSDVDRIVLIPARCDYDEETKELLWWALEDYVGFKKRS
LRLLNMGKKEFVTLDPIELKWEEEERRMEGREVEEEEEEEEEDDKKEKEE
EVEEEEEEEEEEEEGEEEEEEEAVPVTDRAQSVMMGEGERGCSPSPATDQ
PSSRESSSSVDSSIPVRLMKALSGEEIDLSVSAQLKEGGRGGGNASSSPL
LTRGLVEETSGPVPSIYSFISHNTPSHLLTLPHGRTRAHRRYSSLSSSPV
EGAFSSLPLSFQSLLLSSGKGGRKEGEEAAAAAAAAGRRYDYLVGALDLA
TALGVGRKGSRMIMGKSGHEGAVSWVHLREDEIMELSQSQA*
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Synonyms
Publications