NO01G00540, NO01G00540 (gene) Nannochloropsis oceanica

Overview
NameNO01G00540
Unique NameNO01G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2632
Alignment locationchr1:143513..146144 +

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Properties
Property NameValue
DescriptionATP-dependent protease ATPase subunit HslU
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:143513..146144 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009376HslUV protease complex
GO:0005737cytoplasm
GO:0009376HslUV protease complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0008233peptidase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR004491HslU
IPR003959ATPase_AAA_core
IPR019489Clp_ATPase_C
IPR003593AAA+_ATPase
Vocabulary: Biological Process
TermDefinition
GO:0043335protein unfolding
GO:0006508proteolysis
Homology
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_068548587.1 (ATP-dependent protease ATPase subunit HslU [Thermosulfidibacter takaii] >BAT70878.1 ATP-dependent HslUV protease ATP-binding subunit HslU [Thermosulfidibacter takaii ABI70S6])

HSP 1 Score: 349.4 bits (895), Expect = 2.000e-92
Identity = 214/455 (47.03%), Postives = 277/455 (60.88%), Query Frame = 0
Query:   82 LFPEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL------KLGNTKSTTAQQ---QEELRTRLRNGDFDHHTRRLH-RDRARAGR------AGRXXXXXXXXXXXGG------ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            L P++IV  L+KYI+ Q  AKKA AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+ LA APF+KVEA+++TEVG+VG +   +I+ L   AVR+ +E   K V   A+A AE K+LDLL      KL        Q    +E+ R  LR+G  D     +   D++           G            G       +++ + VK A E   ++  E L + +EV+  A  + E  GIVFIDEIDK+ G                     EGVQR+LL LVEG SV TRYG VRTD +LFIA+GAFH   PSDL+PELQGRFP+RV L PL+K D ++IL+  K  + +Q K LLATEGVELEFT  GI+ +A  A Q+N   ++IGARRL TVM ++LEE+S+ AP  +G+KVVVD  +VD  LKE  + K ++LS+YIL
Sbjct:    6 LTPQEIVEELNKYIIGQAKAKKAVAIALRNRWRRQQLPSELREEVLPKNILMIGPTGVGKTEIARRLAKLANAPFVKVEASKFTEVGYVGRDVESIIRDLTKVAVRMVKEEKEKQVQEKAKALAEEKILDLLLPIPKRKLALDPEAYEQHKRTREQFRQLLRDGKLDDREVEVEVEDKSSMPMIEVIPVTGMEDMDLSIREMLGNLFPKKMKKKRMKVKDAFEYITKQEAEKLIDMDEVIKEAIERVEQTGIVFIDEIDKIAGK----------EHTHGPDVSREGVQRDLLPLVEGTSVTTRYGVVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELDPLTKEDFVRILTEPKNALTKQYKALLATEGVELEFTEDGIDRIAEIAVQLNEKMENIGARRLYTVMEKMLEEVSFNAPNMKGQKVVVDRKYVDEHLKE--VIKDEDLSKYIL 448          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_107231966.1 (MULTISPECIES: ATP-dependent protease ATPase subunit HslU [Stenotrophomonas] >PTA71401.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas sp. Nf1] >PTA80972.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas sp. Nf4])

HSP 1 Score: 349.0 bits (894), Expect = 2.600e-92
Identity = 214/458 (46.72%), Postives = 277/458 (60.48%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN-------TKSTTAQQQEELRTR----LRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G         +S  + Q  E R +    LRNG+ D   R +  D A           G               GG     ++ +++K A    VEE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARSEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLVEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDAHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_049438988.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia])

HSP 1 Score: 348.2 bits (892), Expect = 4.400e-92
Identity = 213/458 (46.51%), Postives = 277/458 (60.48%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN--------TKSTTAQQQE---ELRTRLRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G             +AQ  E   + R  LRNG+ D   R +  D A           G               GG     ++ +++K A    +EE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D+A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDKAYVDAHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_049414362.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia] >PJL65375.1 ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas maltophilia])

HSP 1 Score: 347.8 bits (891), Expect = 5.700e-92
Identity = 213/458 (46.51%), Postives = 276/458 (60.26%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN--------TKSTTAQQQE---ELRTRLRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G             +AQ  E   + R  LRNG+ D   R +  D A           G               GG     ++ +++K A    +EE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDAHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_057496560.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia] >KRG51151.1 ATP-dependent protease [Stenotrophomonas maltophilia])

HSP 1 Score: 347.8 bits (891), Expect = 5.700e-92
Identity = 214/458 (46.72%), Postives = 276/458 (60.26%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN--------TKSTTAQQQE---ELRTRLRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G             +AQ  E   + R  LRNG+ D   R +  D A           G               GG     ++ +++K A    VEE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLVEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGESLAIDSAYVDKHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_065175176.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia] >OBU49911.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas maltophilia])

HSP 1 Score: 346.3 bits (887), Expect = 1.700e-91
Identity = 213/458 (46.51%), Postives = 276/458 (60.26%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN--------TKSTTAQQQE---ELRTRLRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G             +AQ  E   + R  LRNG+ D   R +  D A           G               GG     ++ +++K A    +EE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGTV+TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  I+ +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLLEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDAHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_065198863.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia] >OBU67900.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas maltophilia])

HSP 1 Score: 346.3 bits (887), Expect = 1.700e-91
Identity = 212/458 (46.29%), Postives = 276/458 (60.26%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN-------TKSTTAQQQEELRTR----LRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G         +S  + Q  E R +    LRNG+ D   R +  D A           G               GG     ++ +++K A    +EE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FT   IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPDVARSEPSAQDSETRIKFRRMLRNGELDE--REIELDLAANVSLDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLAIKAARPLLIEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTTDAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDKHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_053520175.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas maltophilia] >KOQ66043.1 ATP-dependent protease [Stenotrophomonas maltophilia] >OBU62488.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas maltophilia])

HSP 1 Score: 345.9 bits (886), Expect = 2.200e-91
Identity = 212/458 (46.29%), Postives = 276/458 (60.26%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL---KLGN--------TKSTTAQQQE---ELRTRLRNGDFDHHTRRLHRDRAR---------AGRAGRXXXXXXXXXXXGG----ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  +AE ++LD L   + G             +AQ  E   + R  LRNG+ D   R +  D A           G               GG     ++ +++K A    +EE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGT++TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSKGD ++IL+  K  + +Q + LLATEGV++ FTA  I+ +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   13 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDE--REIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLLEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDAHLGE--LVQDPDLSRYIL 457          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_095209337.1 (ATP-dependent protease ATPase subunit HslU [Luteimonas sp. JM171] >AOH37444.1 HslU--HslV peptidase ATPase subunit [Luteimonas sp. JM171])

HSP 1 Score: 345.9 bits (886), Expect = 2.200e-91
Identity = 214/470 (45.53%), Postives = 281/470 (59.79%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL------------------------KLGNTKS-TTAQQQEELRTRLRNGDFDHHTRRLHRDRARAGRAGRXXXXXXXXXXXG--------------GERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLPDE+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV++ R+ A++ V   A  +AE ++LD L                         +G   S   +  + +LR RLR G+ D   R +  D A AG +G            G               +++ +S++ A    +EE    L NE+EV   A   AE +GIVF+DEIDK+                       EGVQR+LL LVEG +V T+YG V+TD +LFIASGAFH   PSDL+PELQGRFP+RV L  L+K D ++IL+  +  +  Q  +LL TEGVELEFT   IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP + G KVV+D A+VDG+L E  L +  +LSRYIL
Sbjct:    3 PREIVQELDRHIVGQNDAKRAVAIALRNRWRRAQLPDELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKMFRQQAKRRVRTQAEERAEDRILDALLPRREAPPQAPGFGFAPRPETATVDIGAEPSGQESDTRRKLRQRLRAGELDE--REIELDLA-AGASGMDIITPPGMEEMGQQLRQMFSSLGGGRTQKRKMSIRAARPLLIEEEAGKLVNEDEVREAAIEAAEQHGIVFLDEIDKVA--------RRSEGGVSGADVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHMAKPSDLVPELQGRFPIRVELNALTKDDFVRILTEPRAALTTQYVELLKTEGVELEFTNDAIERLAEIAAQVNEKQENIGARRLHTVLERLLDNLSYEAPDKTG-KVVIDRAYVDGQLGE--LVEDQDLSRYIL 458          
BLAST of NO01G00540 vs. NCBI_GenBank
Match: WP_104938017.1 (ATP-dependent protease ATPase subunit HslU [Stenotrophomonas acidaminiphila] >AUZ54222.1 HslU--HslV peptidase ATPase subunit [Stenotrophomonas acidaminiphila])

HSP 1 Score: 345.9 bits (886), Expect = 2.200e-91
Identity = 210/455 (46.15%), Postives = 272/455 (59.78%), Query Frame = 0
Query:   84 PEDIVAHLDKYIVSQRDAKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLSTLAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAADARAKAEMKVLDLL------------KLGNTKSTTAQQQEELRTR--LRNGDFDHHTRRLHRD-------RARAGRAGRXXXXXXXXXXXGG---ERQVVSVKKALERFVEEFEEVLTNEEEVMARAKHKAENYGIVFIDEIDKLCGSXXXXXXXXXXXXXXXXXXKGEGVQRELLTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVALQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQQINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKEFDLTKGDNLSRYIL 515
            P +IV  LD++IV Q DAK+A AIA+R RWRR QLP E+R EV P NILM GPTG GKTEIARRL+TLA APF+KVEATR+TEVG+VG +   +I+ L D AV+L RE A+  V   A  KAE ++LD L            +    + + A  +  ++ R  LRNG+ D     L              G               GG    ++ +++K A    VEE    L NE+++   A    E +GIVFIDEIDK+                       EGVQR+LL LVEG +V T+YGTV+TD +LFIASGAFH   PSDL+PELQGRFP+RV L  LSK D ++IL+  K  + +Q + LLATEGV++ FTA  IE +A  A Q+N  Q++IGARRL+TV+ R+L+ LSY AP R GE + +D A+VD  L E  L +  +LSRYIL
Sbjct:   14 PREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPAELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEEKAEDRILDALLPRRSVGIGFDAEAARNEPSAADSETRIKFRRMLRNGELDEREIELEMSANVSMDIMTPPGMEEMGQQLRSMFANLGGAKSNKRTLTIKAARPLLVEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVA---------KRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDTLSYEAPDRDGETLAIDTAYVDRHLGE--LVQDPDLSRYIL 457          
The following BLAST results are available for this feature:
BLAST of NO01G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_068548587.12.000e-9247.03ATP-dependent protease ATPase subunit HslU [Thermo... [more]
WP_107231966.12.600e-9246.72MULTISPECIES: ATP-dependent protease ATPase subuni... [more]
WP_049438988.14.400e-9246.51ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_049414362.15.700e-9246.51ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_057496560.15.700e-9246.72ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_065175176.11.700e-9146.51ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_065198863.11.700e-9146.29ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_053520175.12.200e-9146.29ATP-dependent protease ATPase subunit HslU [Stenot... [more]
WP_095209337.12.200e-9145.53ATP-dependent protease ATPase subunit HslU [Luteim... [more]
WP_104938017.12.200e-9146.15ATP-dependent protease ATPase subunit HslU [Stenot... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008330NSK008330Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00540.1NO01G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668152gene_30Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100501g1gene1631Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00540.1NO01G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00540 ID=NO01G00540|Name=NO01G00540|organism=Nannochloropsis oceanica|type=gene|length=2632bp
ATGATGCGGCGTGCCTTCCTCCTCCCTTCCTCCGCCTCCGCCTGCTCCTC
GTCAGTCTTGCTCTCTTCCCCCCGCCACATCCGGCCGCGGCTGCAATCGA
CAGCTTCTTCCACAAGCACAAGACCAGAGGGAGAGGAGGTGTCTTCTCCT
TCGCCCAGCGGACTCTCCCAAGCACCAGAGCGTGCCGCAGACGCGGACAC
AGCCACCATTGAGCAAGAAAGTGGCACTCAGCCGGGATGGCGTCTCTTTC
CCGAAGACATCGTGGCGCACCTCGATAAGTATATTGTATCACAAAGGGAT
GCAAAGAAGGCCACGGCCATTGCAATGCGAATGCGGTGGCGTCGGAACCA
ACTGCCTGACGAAATACGCGCCGAGGTGACACCGTCGAATATATTAATGA
AAGGACCGACAGGGACAGGGAAAACCGAGATTGCTCGACGGTTAAGTACC
TTGGCAGAGGCGCCCTTTATCAAGGTTGAAGCGACGCGCTACACAGAAGT
Ggtgagtggtggggggagtagatagattaagccaggggcgaaggggtgga
aggaaggaggtggcgagtctgcacgcgtaacctgcatacttgggcaataa
aaaccctcaaggtctccatccttccttccctccccctcactccctgcttc
accagGGGTTTGTGGGTGCCAACACTTCGGACATGATCAAGGGCCTGATG
GACAATGCCGTCCGACTTGAAAGAGAGTTGGCCAGAAAAAACGTCGCCGC
GGACGCCCGTGCCAAGGCAGAGATGAAAGTCCTCGATCTACTCAAGgtac
gtcacgtcacgccccccccaatccctttccctcctctccctcttcgtctc
ttgtatctgtacgatttgaatatggtttgagccatctgacagtttccgtc
taatcccattttctctccctccctccctccctccttccctccctcccatg
cctcctccctccttccctccctgctccctcccttcagCTGGGCAACACCA
AGAGCACCACTGCCCAACAACAAGAAGAGCTCCGTACCCGCCTCCGTAAC
GGCGATTTCGACCACCACACTgtgcgtgtcaccccccgggaaacgaggtc
ctcttccctcccttcctccgccaaccccttgtccgaccttctagaaggat
tggacctaggaaacatcaacatgggaagCGGAGGCTTCATCGCGATCGAG
CGCGGGCCGGCCGGGCCGGGAGGGAGGGGGGGAGGGAGGGGGGAGTGAGG
GGTGGAGGGGGAGAGAGGCAGGTGGTGTCGGTGAAAAAAGCCCTGGAGCG
ATTCGTGGAGGAGTTCGAAGAGGTGCTGACGAACGAGGAGGAGGTGATGG
CGCGGGCGAAGCACAAGGCGGAGAACTATGgtaagggagggagagaggga
gggaaggggggtcgaggcatgcacttagagaagtcatgcaagggattttt
gcgattcaaccaccgacaccgaccgagcgccctccctctcccttccatcc
ctccctctctcgttctcttcctccctccccttcctctccttcctccttct
tagGTATTGTCTTTATCGATGAAATCGACAAACTCTGTGGTTCTTCGTCC
GCCGACGCCGCCTCAACTACCACCGCCGGGGGCGGCAACAGCAGCAACAA
AGGTGAAGGAGTCCAACGCGAGCTTCTCACACTCGTTGAAGgtacgcccc
ccctctcccccctcccccctcccttctcccttctttcgttctcctcctcc
tcctcctcctcctcctcctcctcctcctcctccctcatccccctgctcct
ccctccctcttttccttcttcccttctcctcctcctcacccaccgccccc
ttcatccaagGATGTTCTGTCCCCACACGCTACGGCACCGTTCGGACCGA
CTTCATGCTCTTCATCGCCTCGGGCGCATTCCATCACAAATCCCCCTCCG
ACCTCCTCCCCGAGCTCCAAGGACGCTTCCCTGTCCGCGTGGCCCTTCAA
CCACTGAGCAAGGGCGACCTGATTCAAATTTTAAGTGCCAAAAAGTTCAA
TATCTTGGAACAGACGAAGCAATTGCTGGCGACGGAGGGCGTGGAGTTGG
AATTTACGGCCTGTGGAATTGAGgtacgtcttggtcccttagtgcttatg
ttgtggatatatctatacctatacatatatatctataatatatatatata
tatatatatatatatataattatatgatatataatatatatatatatata
tatatgtttttgtgttgggttcatgtgtgagaagatagaaagctctcgat
acccctgtttctgtagcggtatgggtttcaagcctctgcttctttttcga
caatttggaatcatccgttttttcctttccttctaatatttacctccatg
cgtgcacccccaaaagGCCATGGCGGGTTTCGCGCAACAAATTAATAGAA
GCCAGCAGGACATTGGCGCGCGGAGGTTGAACACGGTCATGCATCGTGTT
CTGGAAGAGCTGAGTTATATGGCGCCGAGGAGGAGGGGGGAGAAGGTGGT
GGTCGATGAGGCGTTTGTAGACGGGAGGTTGAAAGAGTTTGATCTCACCA
AGGGGGATAATTTGAGTCGGTATATCTTGTAG
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protein sequence of NO01G00540.1

>NO01G00540.1-protein ID=NO01G00540.1-protein|Name=NO01G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MMRRAFLLPSSASACSSSVLLSSPRHIRPRLQSTASSTSTRPEGEEVSSP
SPSGLSQAPERAADADTATIEQESGTQPGWRLFPEDIVAHLDKYIVSQRD
AKKATAIAMRMRWRRNQLPDEIRAEVTPSNILMKGPTGTGKTEIARRLST
LAEAPFIKVEATRYTEVGFVGANTSDMIKGLMDNAVRLERELARKNVAAD
ARAKAEMKVLDLLKLGNTKSTTAQQQEELRTRLRNGDFDHHTRRLHRDRA
RAGRAGREGGREGGVRGGGGERQVVSVKKALERFVEEFEEVLTNEEEVMA
RAKHKAENYGIVFIDEIDKLCGSSSADAASTTTAGGGNSSNKGEGVQREL
LTLVEGCSVPTRYGTVRTDFMLFIASGAFHHKSPSDLLPELQGRFPVRVA
LQPLSKGDLIQILSAKKFNILEQTKQLLATEGVELEFTACGIEAMAGFAQ
QINRSQQDIGARRLNTVMHRVLEELSYMAPRRRGEKVVVDEAFVDGRLKE
FDLTKGDNLSRYIL*
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Synonyms
Publications