NO01G00510, NO01G00510 (gene) Nannochloropsis oceanica

Overview
NameNO01G00510
Unique NameNO01G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1959
Alignment locationchr1:134267..136225 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:134267..136225 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO01G00510 vs. NCBI_GenBank
Match: EWM28982.1 (hypothetical protein Naga_100737g2 [Nannochloropsis gaditana])

HSP 1 Score: 317.8 bits (813), Expect = 2.300e-83
Identity = 162/191 (84.82%), Postives = 169/191 (88.48%), Query Frame = 0 
Query:    1 MDQLGDLDHEKLITAGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSPGYYDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSALVLWRDEFIQDASAYDDIHXXXXXXXXXXXXXXXXPGYEGGAQQASYNQSTTADL 192
            MDQLGDLDHEKLITAGL+ QGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLA+GFVLGVSVMITFLSLMTAIFWGQL+NCSPGYYD+KRYSCTN SAY ATCAFATLLFL+QL FTSALVLWRDEFIQD+SAYDDIH                PGYEGG QQ SYNQS+TADL
Sbjct:    1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIH---GAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL 188
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BLAST of NO01G00510 vs. NCBI_GenBank
Match: CBN78947.1 (hypothetical protein Esi_0157_0040 [Ectocarpus siliculosus])

HSP 1 Score: 99.8 bits (247), Expect = 1.000e-17
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 0 
Query:    7 LDHEKLITAGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKM------------PLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSPGYYDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSALVLWRDEFIQDASAYDD 154
            LD  K +   +L   V  +C+ IC+ VV+S AN G N VLTA++Y+ YV     V  R +             P+  G ++G++ M+ FLSLMTA++WGQ+S C     DV  YSC N     A   FA+ L + +    +AL+LW+++       YD+
Sbjct:   13 LDKRKSLNTVVLAMAVLTICFFICACVVSSNANAGLNVVLTAMMYVAYVGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALILWKEDMFFVDGGYDN 171
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BLAST of NO01G00510 vs. NCBI_GenBank
Match: CBJ30398.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-15
Identity = 55/145 (37.93%), Postives = 87/145 (60.00%), Query Frame = 0 
Query:   15 AGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSPGY-YDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSAL-----VLWRDEFIQDASAYDD 154
            +G++L  VF   + IC+ VVAS  N GF+ VLT LL   +  G   +L+R     ++GF++GV++++  ++LMTAI+WGQL+ C   Y  D  +YSC+N SA     AFA++++++QL F   L     VL R+++      Y D
Sbjct:   34 SGIML--VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYAD 176
The following BLAST results are available for this feature:
BLAST of NO01G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28982.12.300e-8384.82hypothetical protein Naga_100737g2 [Nannochloropsi... [more]
CBN78947.11.000e-1735.22hypothetical protein Esi_0157_0040 [Ectocarpus sil... [more]
CBJ30398.11.600e-1537.93expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00510.1NO01G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00510.1NO01G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00510 ID=NO01G00510|Name=NO01G00510|organism=Nannochloropsis oceanica|type=gene|length=1959bp
ATGGACCAGCTAGGGGACTTGGACCATGAGAAGCTCATCACGGCGGGCTT
GCTTTTGCAAGGGgtaaggagggagggcggaacggaggatgagaatggaa
aaaaataagagtcggggaaaggataggggaggacataagatgctagtaga
agacaagggcaacttggaggtcaccgttcatacgcctgccgtggaggctg
aggagtctctgccgtgggtgaccaagccccgccgtcgcctcgatgctttg
tcggaccgagagaggacatttcccaccgttggatctaagcgcccatgcac
tcacttttcgggacgtctttctccgccgcttgaaaacatcaaaatcagta
acattgttgttatacacacacaaatatatgtacagGTCTTCGTCCTATGT
TATACCATTTGCTCCTTCGTCGTCGCATCAACCGCCAgtacgtagcccct
gctctttcgccccctccctctctccctccctcccaccgtcccccctccct
ctttacttgttctccaaacacacggagggtgctaacatccaaaagaaaaa
ggcttgcgttgcatttctgtgtgggcggggttgtattcactctctctccc
tccctctttccctccctcctcctcagACATGGGTTTCAATGCAGTGCTGA
CGGCGTTGCTTTACATTTTCTATGTGGCGGGGACGTACCATGTGCTGCAG
CGATCAAAGATGCCATTGGCGgtgaggaaggggaggaacggggggaggga
gagacggaaggagggagggagggagggagggagggaggatggaaggggag
cagcctgcagtcatgagcacggatgcatccgttcgtcggctggtttattt
gtttatttacgtatttacattcttctctaatccttcacagATTGGATTTG
TGCTGGGTGTGTCGGTGATGATCACCTTCCTCTCTCTCATGACGGCCATC
TTCTGGgtaggtgccgagggagggagggagggaaggcgggagggagggag
ggagggttcacagagtcgtcaggcttagaggatgacatttcttcttcctt
ttttttcttattcaaacttcaaaatcttttctctattcctcttcgtcgta
aaattaattttaatctcattcatatttttaatctttttttaaacatatct
cttcctcttctacttcctccccctctcctcctcctccacctcctcctcca
tccctccctcgccacagGGGCAGCTGTCCAACTGCTCTCCGGGCTACTAC
GACGTGAAGCGATACTCTTGCACGgtaagggaagagggagggggggagtg
agggagggagggagtgaatgaggaagggagggaaggagggcaacatggat
atggcgccttggtagttcttttgacgctcacccttccttttcttttcctt
ccgccctccctccctccctccctccttttttctctttctttcaacgcaca
gAACCCGAGTGCGTACGGAGCCACATGCGCCTTTGCCACGCTCCTCTTCC
TCATCCAGgtacactatggccccctccccttccctccctctctcccttcc
ttcctcccttccttccctccttctcttttctgcgataaatcgccaacgtg
ggcctcgtccttctccttctctctctccctccctccctccctcccccgca
gCTGTTCTTCACGTCCGCCCTGGTGTTATGGCGAGATGAGTTCATCCAGG
ACGCCAGCGCCTACGACGACATCCACGgtgcgctcctcccctccctcccc
tcccctctcccctttatccatctatccactgtcggttgcacctactcccg
cccacctttttttcactcctccctccctccctcccttccttcctcccagG
TGGCGGGAGCAGTAGCAACAGTACCAGTGCAGGCGGCGGGGGCTTGCCGG
GGTATGAAGGGGGGGCACAGCAAGCATCTTATAATCAGTCGACTACCGCT
GATCTATAA
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protein sequence of NO01G00510.1

>NO01G00510.1-protein ID=NO01G00510.1-protein|Name=NO01G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MDQLGDLDHEKLITAGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALL
YIFYVAGTYHVLQRSKMPLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSP
GYYDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSALVLWRDEFIQDASA
YDDIHGGGSSSNSTSAGGGGLPGYEGGAQQASYNQSTTADL*
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Synonyms
Publications