NO01G00470, NO01G00470 (gene) Nannochloropsis oceanica

Overview
NameNO01G00470
Unique NameNO01G00470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1225
Alignment locationchr1:126077..127301 +

Link to JBrowse

Properties
Property NameValue
DescriptionTRX domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:126077..127301 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR012336Thioredoxin-like_fold
Homology
BLAST of NO01G00470 vs. NCBI_GenBank
Match: EWM28972.1 (TRX domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 5.200e-75
Identity = 138/205 (67.32%), Postives = 162/205 (79.02%), Query Frame = 0
Query:   41 MPGPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLDDCLAA 246
            MP   +PP P GAAA P+L   KV+VEVFLDL+CP SR+CFKTLYEG +I+AYK K VQ L  NVIQPWHAVG+ MHE +LAVK  QPS FYP+ N++FDA E FSD+ TE+MTR E+M AL++L VE GV R  LEER+AL+GG  GN G+ATTQ VKWACKYHR RGVH TPTVFVNG+EAS +SSAW V EW+ LLD+CL A
Sbjct:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWQRLLDECLEA 205          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: XP_005855955.1 (hypothetical protein NGA_0546800, partial [Nannochloropsis gaditana CCMP526] >EKU20398.1 hypothetical protein NGA_0546800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.3 bits (721), Expect = 1.400e-72
Identity = 135/199 (67.84%), Postives = 157/199 (78.89%), Query Frame = 0
Query:   41 MPGPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELL 240
            MP   +PP P GAAA P+L   KV+VEVFLDL+CP SR+CFKTLYEG +I+AYK K VQ L  NVIQPWHAVG+ MHE +LAVK  QPS FYP+ N++FDA E FSD+ TE+MTR E+M AL++L VE GV R  LEER+AL+GG  GN G+ATTQ VKWACKYHR RGVH TPTVFVNG+EAS +SSAW V EWK LL
Sbjct:    1 MPRSSIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAMERFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWKRLL 199          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: XP_005772336.1 (hypothetical protein EMIHUDRAFT_101939 [Emiliania huxleyi CCMP1516] >EOD19907.1 hypothetical protein EMIHUDRAFT_101939 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 167.2 bits (422), Expect = 6.600e-38
Identity = 90/201 (44.78%), Postives = 119/201 (59.20%), Query Frame = 0
Query:   43 GPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDA--QESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGG-GGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLD 241
            GPPL PT +G     +   + V VE+FLDL CPFSRK F TL EG VI+   G    F++  V QPWHA GS +HE +LAVK   P  +  ++  I++   +  F+D  T + +R +I   L  LA  VGV R     ++A+R    G N G+  TQ VKW CK+HR+RGVH TPTV VNG+EA  +SS WT  +W   L+
Sbjct:   65 GPPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIER-AGDRACFVLHQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 264          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: XP_005790348.1 (hypothetical protein EMIHUDRAFT_109518 [Emiliania huxleyi CCMP1516] >EOD37919.1 hypothetical protein EMIHUDRAFT_109518 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 167.2 bits (422), Expect = 6.600e-38
Identity = 90/201 (44.78%), Postives = 119/201 (59.20%), Query Frame = 0
Query:   43 GPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDA--QESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGG-GGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLD 241
            GPPL PT +G     +   + V VE+FLDL CPFSRK F TL EG VI+   G    F++  V QPWHA GS +HE +LAVK   P  +  ++  I++   +  F+D  T + +R +I   L  LA  VGV R     ++A+R    G N G+  TQ VKW CK+HR+RGVH TPTV VNG+EA  +SS WT  +W   L+
Sbjct:   82 GPPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIER-AGDRACFVLHQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 281          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: XP_009037189.1 (hypothetical protein AURANDRAFT_6387, partial [Aureococcus anophagefferens] >EGB07957.1 hypothetical protein AURANDRAFT_6387, partial [Aureococcus anophagefferens])

HSP 1 Score: 146.4 bits (368), Expect = 1.200e-31
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   66 VEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALR-GGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEW 236
            +E+F+D  CP+SRK F T+Y G V+ A     V+ ++QNV+Q WH   + MHE SLAV++   + F+PF  ++F  Q  F D     M+R +I +ALV +A E  V  + L  ++A     G  N G+A T  +KWA KYHR RGVH TPTVF+NG+EA  +SS W   +W
Sbjct:    5 IEIFVDFCCPYSRKLFDTVY-GGVVGAAPAGQVELILQNVVQCWHPQSAYMHEASLAVRALDEAKFFPFAAKLFSRQVEFFDAHIWDMSRAQIYDALVEIASEF-VDAEALRAKLARTIVEGSLNTGNAATLDLKWATKYHRVRGVHVTPTVFLNGVEAPDVSSGWDADQW 173          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: PHS06040.1 (hypothetical protein COA89_10815 [Acidithiobacillus sp.])

HSP 1 Score: 142.5 bits (358), Expect = 1.700e-30
Identity = 82/201 (40.80%), Postives = 111/201 (55.22%), Query Frame = 0
Query:   43 GPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSV----IDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELL 240
            G PLP  P+G     SL  A V+VE+F D+ CP+S+K F T+++  +     +A  G  VQFL Q+V QPWHA    MH+  +A           ++  IFD Q  F D   + ++R +I E L  +  E G     L   ++L+G  G +     TQ +KWA KYHR RGVH TPTVF+NGIEA  +SS W+  EW E L
Sbjct:    7 GAPLPTVPIGIKITNSLAPA-VVVELFQDVCCPYSKKMFDTVFQSLIPILEKEALIGN-VQFLWQSVPQPWHAQSCCMHDAVMAASILDVEKTANYILNIFDKQTDFFDDRAKNLSRIQIYEKLTVIGGESGYDISSLSALLSLKGVKGNDGLGNVTQYLKWAVKYHRMRGVHVTPTVFINGIEAPDVSSXWSYKEWLEKL 205          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: XP_005537379.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81343.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 132.1 bits (331), Expect = 2.400e-27
Identity = 82/205 (40.00%), Postives = 111/205 (54.15%), Query Frame = 0
Query:   45 PLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKG-KPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQ-PSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGV--SRKGLEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLDDCLAA 246
            PLP  P+           +V+VEVFLD +CP+S+K F TL++  V+  Y+    VQF    V QPWHA    MHE +LA +     + F+     +F  QE + D      TR ++ E L     + GV  S   + ER+    G  GNA  A    VK+AC+YHR RGVH TPTV +NGI   + SS+WTV EWKE +D  L++
Sbjct:   75 PLPKRPVTVPFYGERPYPQVLVEVFLDYNCPYSKKAFLTLWQ-EVLPHYRADSRVQFAFGLVPQPWHAQTCYMHEAALAARQVSGDAGFWKASAALFAQQEDWVDEKVLDKTRRQVYEELAQCLAKAGVVSSASLITERLLTASGNSGNAVGAD---VKFACRYHRVRGVHVTPTVHINGIPELNASSSWTVQEWKERIDSLLSS 275          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: KZM22189.1 (hypothetical protein ST47_g6673 [Ascochyta rabiei])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 0
Query:   66 VEVFLDLDCPFSRKCFKTLYEG----SVIDAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIAL----RGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLDDCLA 245
            +E++LD  CPFS K FKT+Y G    ++++ Y  + V    Q  IQPWH   +L+HE   AV   QP  FY F  ++F+ Q+ F D++    TR    + L  +A  VGV  K +   + +       GG NAG+  T  VK   K +R +GVH TPTV  +G+  + ISS+WT  +W+E L+  +A
Sbjct:   25 IEIYLDYVCPFSAKLFKTVYSGPLRNTLLEKYSDRVVTIFRQQ-IQPWHPSSTLVHEAGFAVLKVQPDKFYDFSEKLFEQQKDFFDVSVVNETRNNTYKRLAKIAGSVGVDEKQVYALLEISDKPNEDGGLNAGNGVTDYVKLQTKQNRLQGVHVTPTVVFDGVVNNDISSSWTEKQWEEWLEKNVA 210          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: EXX54544.1 (hypothetical protein RirG_233680 [Rhizophagus irregularis DAOM 197198w] >PKC06340.1 hypothetical protein RhiirA5_360383 [Rhizophagus irregularis] >PKC71448.1 hypothetical protein RhiirA1_413170 [Rhizophagus irregularis] >PKY26033.1 hypothetical protein RhiirB3_414695 [Rhizophagus irregularis])

HSP 1 Score: 127.1 bits (318), Expect = 7.600e-26
Identity = 68/182 (37.36%), Postives = 107/182 (58.79%), Query Frame = 0
Query:   65 MVEVFLDLDCPFSRKCFKTLYEGSV--IDA-YKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKG----LEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELL 240
            ++EV+LD  CPFS K +K L    +  ID  Y GK VQF+ +  +QPWH   +++HE ++AV+   PS F+ F +++FD Q+ + D + + +TR +I E+L S   E+G+S       L   ++++     NAG+  T  +KW  K  R  G+H +PT   +GI  + ISS WT+ +WKE L
Sbjct:   20 ILEVYLDYVCPFSAKLYKRLRNEVLPFIDQNYSGK-VQFIFRQQVQPWHPFSTVVHEAAIAVEKLDPSKFFVFSDKLFDVQKQYYDESVQNLTRAQIYESLASHVSEIGLSSSDFLLLLHIPVSIKSEEARNAGNKITNELKWHIKLGRQIGIHVSPTSLFDGIIDNDISSGWTLDQWKEWL 200          
BLAST of NO01G00470 vs. NCBI_GenBank
Match: KOO26017.1 (thioredoxin-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 127.1 bits (318), Expect = 7.600e-26
Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = 0
Query:   95 GKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQES--FSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNAGSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELL 240
            G  V F+   VIQPWH  G+ +HE +LAVK   P  F+ +   +F A ++  F D  T  ++R +I E L+ +A   G+ R  +E  +A R    GN+G+  TQ++KW  KYHR RGVH TPTV VNG+EA  +SS W+  +W E L
Sbjct:   15 GDKVCFIFNQVIQPWHPQGTCVHEAALAVKQCAPDKFFAYCTALFTALDNGRFKDDTTWDLSRAQIYEELLVIAAATGIDRAAVEALLA-RSPEAGNSGNQMTQMIKWVVKYHRCRGVHVTPTVHVNGLEAGVVSSGWSTEQWLEFL 160          
The following BLAST results are available for this feature:
BLAST of NO01G00470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28972.15.200e-7567.32TRX domain-containing protein [Nannochloropsis gad... [more]
XP_005855955.11.400e-7267.84hypothetical protein NGA_0546800, partial [Nannoch... [more]
XP_005772336.16.600e-3844.78hypothetical protein EMIHUDRAFT_101939 [Emiliania ... [more]
XP_005790348.16.600e-3844.78hypothetical protein EMIHUDRAFT_109518 [Emiliania ... [more]
XP_009037189.11.200e-3143.86hypothetical protein AURANDRAFT_6387, partial [Aur... [more]
PHS06040.11.700e-3040.80hypothetical protein COA89_10815 [Acidithiobacillu... [more]
XP_005537379.12.400e-2740.00hypothetical protein, conserved [Cyanidioschyzon m... [more]
KZM22189.11.200e-2637.43hypothetical protein ST47_g6673 [Ascochyta rabiei][more]
EXX54544.17.600e-2637.36hypothetical protein RirG_233680 [Rhizophagus irre... [more]
KOO26017.17.600e-2642.86thioredoxin-like protein [Chrysochromulina sp. CCM... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008339NSK008339Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00470.1NO01G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575936gene_24Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100773g1gene1638Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00470.1NO01G00470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00470 ID=NO01G00470|Name=NO01G00470|organism=Nannochloropsis oceanica|type=gene|length=1225bp
ATGATATCCGACGATCCATCCGgtccgtagagggcgcgtgcgctttttct
tatacttaagtttgtcaagtctatgacacccttccctttatcacatttcc
tgaaatagcagGACGCACGGTGCCGTTGCAATTATTGTTCTTGCTCGAAG
CTGTGAAACGGAATCACCACACTCGTCCCTACGCCTCGCGTCCTGGCTGG
ACTTCAATCATGCCTGGCCCACCCCTGCCTCCGACTCCGCTGGGTGCCGC
GGCTGTCCCCTCCCTGTGTACCGCCAAAGTAATGGTTGAGgtgcgtgtat
tgcgaggggaggggggtggacggggtgagcgttatcgctcacgcagttgg
atcaaaacagcctccttgctgtctgcttgagtattgacccttgacacacc
attcatcccgaggccttcgattagcaggtcgccaataggcatggtacggg
gcatgacataattttaggagcacatctagcactagagtagaggcactgca
tcctccagttgccgttctcattcctctcattcctctcgcgacatcattag
cacccgtccttcatccctcggtccctcggtccttcagctctgttcccaaa
aacacatgatgtctgactcaagtgtatcaacacaatatccactcacttct
ttgtttccccttctcccttccctcgcacacagGTCTTCCTGGACCTTGAC
TGTCCGTTTTCTCGCAAGTGCTTCAAAACCCTCTACGAGGGGAGTGTGAT
CGATGCGTACAAAGGAAAGCCCGTGCAGTTTCTGGTGCAGAACGTGATTC
AACCGTGGCATGCTGTAGGGAGTTTGATGCATGAAGTCAGCCTGGCCGTT
AAGAGCACGCAGCCTTCTCATTTCTATCCCTTTGTCAATCGAATTTTCGA
CGCGCAGGAGTCATTTTCGGATTTGGCGACGGAGAAGATGACGAGGGGGG
AGATTATGGAAGCCTTGGTGTCCCTAGCCGTAGAGGTGGGCGTGTCCCGC
AAGGGACTGGAGGAAAGGATTGCTTTGAGAGGGGGAGGAGGGGGCAATGC
GGGGTCGGCGACGACGCAGGTTGTGAAGTGGGCGTGTAAATACCATCGGA
GTCGAGGGGTGCATGCAACCCCGACAGTGTTTGTGAATGGCATAGAGGCG
AGCCATATATCAAGTGCATGGACGGTGGTGGAGTGGAAGGAGTTGTTGGA
CGACTGCCTGGCAGCGAGTTTTTGA
back to top

protein sequence of NO01G00470.1

>NO01G00470.1-protein ID=NO01G00470.1-protein|Name=NO01G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MISDDPSGRTVPLQLLFLLEAVKRNHHTRPYASRPGWTSIMPGPPLPPTP
LGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVIDAYKGKPVQF
LVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFDAQESFSDLAT
EKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNAGSATTQVVKW
ACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLDDCLAASF*
back to top
Synonyms
Publications