NO01G00370, NO01G00370 (gene) Nannochloropsis oceanica

Overview
NameNO01G00370
Unique NameNO01G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2730
Alignment locationchr1:87689..90418 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:87689..90418 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00370 vs. NCBI_GenBank
Match: XP_005855571.1 (hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526] >EKU20786.1 hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.4 bits (381), Expect = 3.500e-33
Identity = 100/230 (43.48%), Postives = 139/230 (60.43%), Query Frame = 0 
Query:   19 LLQYLLVLVSLACLVYADCPPDGAITATVTLSRTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGH-------------------DHEDXXXXXXXXXXXXXXXXXXGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKSYASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGIGHEKTLCWEPDDHVHIDLFGKIGVDRHDH 230
            +++Y  + +  A    ADCPPDGA+   V+ S+TRVRRG V   T+ + Q+TDWGNAT +YP +ILP+  H                       XXXXXXXXXXXXXXXXXX PA FRSG I+PRIWK S SN+P  E  + +VY+ +P  YA+S+P P           A  H+F+  ++V K  E++ LEFD+ + DG+  +  +C+ P +HV ID++G+I  +R DH
Sbjct:    7 VMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPALILPVDNHTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP------RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGL--DGNICFGP-EHVEIDVYGRIRPER-DH 226
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BLAST of NO01G00370 vs. NCBI_GenBank
Match: EWM28959.1 (hypothetical protein Naga_100308g3 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 1.200e-30
Identity = 92/270 (34.07%), Postives = 134/270 (49.63%), Query Frame = 0 
Query:   19 LLQYLLVLVSLACLVYADCPPDGAITATVTLSRTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGHDHE-----------------------------------------------------------DXXXXXXXXXXXXXXXXXXGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKSYASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGIGHEKTLCWEPDDHVHIDLFGKIGVDRHDH 230
            +++Y  + +  A    ADCPPDGA+   V+ S+TRVRRG V   T+ + Q+T+WGNAT +YP +ILP   H H+                                                                      XXXXXXXX PA FRSG I+PRIWK S SN+P  E  + +VY+ +P  YA+S+P P ++G K     A  H+F+  ++V K  E++ LEFD+ + DG+  +  +C+ P +HV ID++G+I  +R DH
Sbjct:    7 VMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTNWGNATAIYPALILP-EEHHHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVELARNLAGGXXXXXXXXXPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNPRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGL--DGNICFGP-EHVEIDVYGRIRPER-DH 271
[Close]
BLAST of NO01G00370 vs. NCBI_GenBank
Match: XP_005854219.1 (hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526] >EKU22144.1 hypothetical protein NGA_0607420 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.6 bits (218), Expect = 2.800e-14
Identity = 60/211 (28.44%), Postives = 92/211 (43.60%), Query Frame = 0 
Query:   19 LLQYLLVLVSLACLVYADCPPDGAITATVTLSRTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGHDHEDXXXXXXXXXXXXXXXXXXGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKSYASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGIGHEKTLCWEPDDHVHIDLFGKIGVDRHDH 230
            +++Y  + +  A    ADCPPDGA+   V+ S+TRVRRG V   T+ + Q+TDWGNAT +YP    P                                                          +  IP S    L    ++G K     A  H+F+  ++V K  E++ LEFD+ + DG+  +  +C+ P +HV ID++G+I  +R DH
Sbjct:    7 VMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPAPSHP----------------------------------------------------------HLLIPPS--PLLLSLRSMGKKRPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGL--DGNICFGP-EHVEIDVYGRIRPER-DH 153
The following BLAST results are available for this feature:
BLAST of NO01G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855571.13.500e-3343.48hypothetical protein NGA_0607410 [Nannochloropsis ... [more]
EWM28959.11.200e-3034.07hypothetical protein Naga_100308g3 [Nannochloropsi... [more]
XP_005854219.12.800e-1428.44hypothetical protein NGA_0607420 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00370.1NO01G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G00370.2NO01G00370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575857gene_12Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100308g3gene1653Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00370.1NO01G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G00370.2NO01G00370.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00370 ID=NO01G00370|Name=NO01G00370|organism=Nannochloropsis oceanica|type=gene|length=2730bp
ACCACAGCCATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCAT
CACCACCATGGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTT
GTCTGgtacgtaattaccaggcttcttttgtcgtatttgtcttttattcc
aaacacaaccatacactgtcttcaattgttgccgccttcggcaaatccct
ctatccttagtccttatctggagtctatgacctccaagggatccatcaca
tgtcattctatggggaaaattatgagaactctcaaacatgtaaatatccc
ctcccatcctccctccttccttcccttccacttgtagGTCTACGCTGACT
GCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGCAGGACGCGA
GTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGACCAGATCAC
GGATTGGGGCAATGCTACCGTTGTATACCCTGGGgtaggtgaagtgtgag
ggaagatggtagcaagggagggggtgacaggagtgctttgggaagaggca
ggtagacatgcttaagggatacagataggaggtgggatgcacatatgcat
gtgagcccgacagtggaagacgtcctgaccaccctcctggtcatattctc
ccacattacctttccctttttcttcccgaacccttttttccaccacctat
cactcctcctgccctaaactcgtatttttcttatttactgcctcctcgtt
caccacgcagGTCATTCTTCCAATGGGAGGTCACGATCATGAGGACGAAC
ACCAGCACGAGGACGAACACCAGCACGAGGACGAACATGGCCACGAAGAA
GGCCCGGCCGCCTTCCGCAGTGGCAATATCAGGCCCCGCATCTGGAAAAA
TTCTATTTCTAACAAGCCCCAGCTTGAGCATGAAGAACACATGGTCTATT
ATACCATCCCCAAGTCGTATGCCTCCTCTTTACCAGGACCCGGgtaagcg
cttttatcctttcctccctctccccttccctccttccctgcatcattccc
ctttcccagcgaatatttcggaatcttccttgatcaaccttacttgtttt
cggtaggaagcgaatattatgtccttcaaggatttgggatgactgccgct
gtaccttttctccttccctccctcgggtttctccctcttgcccgccttgg
tccgtcatccttccctcccaattattcatacgcttggagaagttctgtac
cagtgcccaagacctaaaaagtggacaagctctccccgtgtccttagttc
ctcctctctttccccatcattcattccaattttctctctttttagGACCC
TGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCATAGTTTCAAGATG
TCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTTCGATGT
AGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTTGCTGGGAGCCGG
ATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAGGGCGTA
CATTGTGCGGTTAATTGATGTACAGGTTTGTCCAAATTCCGAACAATCTG
AGGGATCCGTTGATTAATTTTTCCGTTCCATGAAGTTGGCATGTCCAAGG
TAAGTATACTGAAAGAGGGGAAGAGGAGAGCTTGTTGGATGAAGAATCTG
CGTCTTGGCTAGGCCCGATTGGGGTATTGCTCTTGGTACGAATATGTGAG
AGTAATTAACAAGACGGAGTGAGTGGTGATTTGAGAAGGGAAGGGCTTAA
GTTCAGGAGGGATAAACATGCACAAGGAAAGCGTAAAAGGAAAACGTGCA
TCGGCGAAGCTCAGCGCCGAGGATACGTGAAACAGCAACTTTCGTGGGAC
TATAGATTTACATTAAGCATCACGCTGATCCTTTGAGCATGATGGTAAAT
GGGTCAGAGAGGAAGCAGGCGAAGACATTGAAATTCCTATGCCTCATATC
TCTCATTTCCTTCCATTCCTTCACAGATTGACCTCTTCGGTAAAATTGGT
GTCGACAGGCACGATCATTAGCTTACGTAGCCCCCAAAGCTTGCTCCGGG
GCAATAAACTTCGCTAGTGTGTCGGGGGCGTTTTTTCCCTTTGTTTATGA
TCGAGGATTTTAAAAGATGGAAAATAAAAGGTTACGATTGGGGAGGCCAC
AAGTGGCGGCTGCTTCCCTGAGCTAGTCACTAGCAAGAGTTTCTTAATGT
TGGTAAACCTTTCGCGGGCCAAAAATGTAATGCCTTAGAAATGTGTCGAT
TTGAGTGTTGAGTGAGGACTATCGGTCTTTGCGTACGACTAAGGGATGGG
AGTGTGGAGGCGTTTCTGTTTCTGTCCCAAGGGCCTTCTCTCGAGGCTTC
GCGCACAAAATGACCCATGAGCGTGATAGACGAAAAATCCGCCAATGTCT
ATACATGTCGCGTACACAGTCACAGTACATTTATATTTCTTGTTCGCGTT
TATGAAGCTTAAATTCTAATGAGATCACACGTCGGACGACTACCGGCATC
ATCTAGTCAATCGTCAGTCATCTTTGGCCCTTCGATTATGCATGACAAGT
ATAATTGTCGTCGTAGTCGTCCTTTTTACTTTTTTGGGGTTTTATCACCA
TTACGAGCCTTGCCACCGACATGATGGCATCTACTTCTACCATAATGTGA
GCACCAAACTAAGCCCATCCCGTATGACGG
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protein sequence of NO01G00370.1

>NO01G00370.1-protein ID=NO01G00370.1-protein|Name=NO01G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MLASSSSKLAGKFITTMALLQYLLVLVSLACLVYADCPPDGAITATVTLS
RTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGHDHEDEHQHEDE
HQHEDEHGHEEGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKS
YASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGI
GHEKTLCWEPDDHVHIDLFGKIGVDRHDH*
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protein sequence of NO01G00370.2

>NO01G00370.2-protein ID=NO01G00370.2-protein|Name=NO01G00370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MLASSSSKLAGKFITTMALLQYLLVLVSLACLVYADCPPDGAITATVTLS
RTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGHDHEDEHQHEDE
HQHEDEHGHEEGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKS
YASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGI
GHEKTLCWEPDDHVHVRRGKEGGREGVHCAVN*
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Synonyms
Publications