NO01G00250, NO01G00250 (gene) Nannochloropsis oceanica

Overview
NameNO01G00250
Unique NameNO01G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr1:42953..43744 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:42953..43744 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00250 vs. NCBI_GenBank
Match: EWM28942.1 (hypothetical protein Naga_100347g3 [Nannochloropsis gaditana])

HSP 1 Score: 225.3 bits (573), Expect = 1.900e-55
Identity = 135/210 (64.29%), Postives = 158/210 (75.24%), Query Frame = 0 
Query:   24 PVRQQRMRLSMSSFPSSSCA-------LASRRAALSGKVTAAAASFFLLSNPTPALAGVKPSTAEESIKAAREIKAGLKSLAEMQVAASKADWETVKTLLSRPEFKNFDSTATTLVRSDLLTAEDKTSLGTIRRFGLTADYIIMIGGLETELRVGGVLPPLKDAIEDLEDEEGNGKSVNRGEAVKFVKLARGSLQEIDRISSSVLPEGEQ 227
            P ++    + MSS  SS  A       ++SRR +L    T A+A  FL     P  A VK S+ EE+ KAAREIK  L+S+A+MQ AASKA+WETVK LL R EFKNF++TATTLVRSDLLTAEDKTSLGTIRRFGLTAD+II +GGLE+ELR GGVLPPLK AI + ED+EG  K VNR EA+KFVKLARG+LQEIDRI+SSVLPE EQ
Sbjct:   32 PSKRVSALVFMSSSTSSDIAPSAAARGISSRRDSLVRVATTASALVFLSPFRHPVSAAVKASSTEEAQKAAREIKVALRSMADMQDAASKAEWETVKDLLERLEFKNFENTATTLVRSDLLTAEDKTSLGTIRRFGLTADFIITLGGLESELRAGGVLPPLKGAIVE-EDDEGGEKGVNRREALKFVKLARGALQEIDRITSSVLPEAEQ 240
The following BLAST results are available for this feature:
BLAST of NO01G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28942.11.900e-5564.29hypothetical protein Naga_100347g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL007nonsL007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR042ncniR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009790NSK009790Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00250.1NO01G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621394gene_12344Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100347g3gene1669Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00250.1NO01G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00250 ID=NO01G00250|Name=NO01G00250|organism=Nannochloropsis oceanica|type=gene|length=792bp
AACACAGCCAGACAATTGATCCACGGGCCCCGACACCCTCCGAAAGCAAA
GCAAAATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGTACTGCCCATG
CTCGCCGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAACGTATGCGCCT
CTCCATGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCCTCCCGTCGCG
CCGCCCTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTTCTTCCTCCTG
TCCAATCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGACAGCGGAAGA
GTCAATCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAGAGCCTGGCCG
AGATGCAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGTCAAAACGCTC
CTGAGTAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCACCACCTTGGT
GCGCTCGGATCTGTTGACGGCCGAGGATAAGACGAGCCTGGGAACTATCC
GTCGCTTCGGATTGACAGCTGACTACATCATCATGATTGGTGGCCTCGAG
ACGGAGTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGGACGCGATAGA
GGATTTGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAACAGGGGAGAGG
CGGTAAAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGAAATCGACCGT
ATCTCCAGCTCGGTACTGCCCGAGGGAGAGCAATGAGGAGATAAAAAGTG
TGAAAAAGATGAAAAACATACAAGCAAGAAGATTGACTGGTA
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protein sequence of NO01G00250.1

>NO01G00250.1-protein ID=NO01G00250.1-protein|Name=NO01G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKTPSVLTIVLVLPMLAAAFLVRPVRQQRMRLSMSSFPSSSCALASRRAA
LSGKVTAAAASFFLLSNPTPALAGVKPSTAEESIKAAREIKAGLKSLAEM
QVAASKADWETVKTLLSRPEFKNFDSTATTLVRSDLLTAEDKTSLGTIRR
FGLTADYIIMIGGLETELRVGGVLPPLKDAIEDLEDEEGNGKSVNRGEAV
KFVKLARGSLQEIDRISSSVLPEGEQ*
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Synonyms
Publications