NO01G00160, NO01G00160 (gene) Nannochloropsis oceanica

Overview
NameNO01G00160
Unique NameNO01G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr1:25281..26198 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:25281..26198 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1901642nucleoside transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005337nucleoside transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002259Eqnu_transpt
Homology
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BLAST of NO01G00160 vs. NCBI_GenBank
Match: XP_009033836.1 (hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens] >EGB11473.1 hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens])

HSP 1 Score: 97.8 bits (242), Expect = 6.100e-17
Identity = 87/296 (29.39%), Postives = 139/296 (46.96%), Query Frame = 0 
Query:    4 FLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFL 300
            +L I +    + +R+ F   A L  SG   W  L+  P  QALL  KDR      +  A  IE+K    V    A+   A   ++     S+ P   +         + A +            ALS  + + +   + P    L  T+  SIF ++  AY  S+   S   + ++LYF RLF D  GRP    LP    +    QL +  ++R+   ++F VYIF P  +P SD+FV   + +F++ SGYL ++SYEYAA+      A +++A ++MN  FQ + F+AV+  + +
Sbjct: 1053 YLNIGSTASPASIRVFFILMATLAVSGLVAWTMLVLSPKIQALLADKDRCVDELDMTKAPLIEDKAKAPVSGSGATA--AFRRNSSAEDVSAAPGDDEAPGRLEGDEAAAETPADGDDDKPTFDALSGNDMEAIAKQVWPCRVALFWTMFGSIFTAAFFAYANSN---SGIDIEQVLYFTRLFGDLFGRPFTS-LPRPKCLQTGQQLATFAISRLIFSVIFFVYIFVPG-IPSSDLFVIADIGIFSVSSGYLGIISYEYAARDFKSTAA-KSYAATLMNTTFQISMFLAVLLGIII 1340
The following BLAST results are available for this feature:
BLAST of NO01G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009033836.16.100e-1729.39hypothetical protein AURANDRAFT_61938 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL007nonsL007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR042ncniR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009791NSK009791Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00160.1NO01G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621401gene_12345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00160.1NO01G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00160 ID=NO01G00160|Name=NO01G00160|organism=Nannochloropsis oceanica|type=gene|length=918bp
ATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCG
CCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATAT
GGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAG
GACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGA
GAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGT
CCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGC
AAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCAC
CACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAAC
GGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATT
ACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAG
CAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGC
GTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCAC
TATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCG
CATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACG
TCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTT
TTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGT
CGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCC
ACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTT
GACTTGGGCTTTTCCTGA
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protein sequence of NO01G00160.1

>NO01G00160.1-protein ID=NO01G00160.1-protein|Name=NO01G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MVSFLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLK
DRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTS
KTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSI
TIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPH
YLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFAL
LSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFLV
DLGFS*
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Synonyms
Publications