NO01G00050, NO01G00050 (gene) Nannochloropsis oceanica

Overview
NameNO01G00050
Unique NameNO01G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2175
Alignment locationchr1:6922..9096 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:6922..9096 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00050 vs. NCBI_GenBank
Match: EWM28940.1 (hypothetical protein Naga_100347g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 4.000e-18
Identity = 137/476 (28.78%), Postives = 187/476 (39.29%), Query Frame = 0 
Query:   43 SSGSSGSCDGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKPPDAHRESLFAPFYASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRGGVDEIQDEGREK------GGRGEQNDKGERDTGLRRAEQGAAMPLLVQHRQQEPVTHSXXXXXXXXLSLAPSLSIPSSNLPKYTITVVPWQRASSISYPSSTRHASSGCLGLFRCTSTWSHAFPSTSFPP--SSFITYKITLTLGDSFSFPLTSCFSSSPSFVXXXXXXXXXXXXXXXXXVPRTHTTIKRYSELLRYHRLWCEQRLVPRSLKAKFPPKTLLPPTMTMGTVR-------------TVGPVGRMDGDGEAGEASSSTLKRAYKLQLYFQALLDLKEEGTEE--GRMQG------GNLVESPLFWAMFAAS 490
            SS  + SC  S+    + +   + +   R+ +G EK  G+  S L V GRLT EL+K PD   E LFAP +ASD                                         +ESLT RLR+  +E+   K + E KV +  S  GDG   G                     G         ER +G  R EQ     ++   R   P+                +L+ P   LP++ ++VVP     S S   +      GC G F C+      +      P  +  +TY+ITL L    S    S    +P+                   +  TH  +KRYSELL  H LWCEQ LVP + K KFPPK  +   M  G+VR             T G    + G   A   S +   RA  LQ YF+ALL+L +EG  E  G  +G      G +V+SPLFW +F +S
Sbjct:   79 SSPLTESCIESNDSLFADVSPQAQRGGGRKVKGGEK--GEEESCLPVSGRLTSELVKAPDPQHECLFAPQWASD--STGPPAKKPPSYLPASSPGTVRETWWMKGPASDSTEAEAEESLTRRLRQRKQEMMK-KQESEGKVTE-GSPLGDGELSGXXXXXXXXXXXXXXXXXXXXVGALCNSQSVEERGSGPERHEQRGQGQMIRPPRIVSPLA---------------TLAEPRHRLPEHAVSVVPHAPPPSSSRVVARAGGPFGCHGFFHCSGRPILGYDKLCISPWKAQAVTYEITLKLPKKVS----SSTLEAPARPLLPSSASPLALSRVTSAMTSTHVAVKRYSELLSLHHLWCEQGLVPPAAKKKFPPKRRI-MFMGAGSVRHRRLNSRDAGAWKTTGE-DSLRGTPAAQPISRACQDRARALQDYFEALLELTKEGDMECKGGWEGRRAVKVGKVVKSPLFWMLFGSS 527
The following BLAST results are available for this feature:
BLAST of NO01G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28940.14.000e-1828.78hypothetical protein Naga_100347g1 [Nannochloropsi... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00050.1NO01G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00050.1NO01G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00050 ID=NO01G00050|Name=NO01G00050|organism=Nannochloropsis oceanica|type=gene|length=2175bp
AGGATAAGATTTAAGGGGGAAGGAAACGTGTCTTTAAAGCTCTTTTCCTC
TGTCTTTTTTTCCAGTCCCTGCCTTTTAAAGCAACCATGTGCTCACCCAC
ATGAGAGAGGAAAGTTGGGGGGTATGCTCTCCAATGGAGTTCGAATTCAA
TTTATTTTCCAAAGACTCCGTAATAACTTCGGTCTTCTAGACTATCAAGT
ACGCATTTGCCTAGGAGGTGGACTTCCTACGGTGAAAGGCATGACGTTTG
ATCAAGTCAGTGTGTTGTCAAGCTCGTAAGCCCCTCGTTTTCACGTTCCC
ATCTCTCGTCCCCTTCAACAAATTGATGTGAGATGATCCATTAATTCATC
ATGTCCTACCCTGGCAACTCACCAGCTTACTCTACCACTATGCATGCCCC
ATGCGGCCAGTAGACAACGCTATCCCACAACATGGGCGTTGGATTGGAGT
CATCGACTTCATCCCGCCGACCAGATGAGAAAGCAAACGCTCCACATCAA
GATTCAGCAGACGCTGCGGACGTCTGCCACGACCACCTCCGCAGCCAGAG
CGTTCACAGCTCGGGCAGCTCTGGCAGTTGCGATGGCAGTAGTCCTCCAC
GTCGGAGCAGCCTAGGCTCGACGTCGTCGAAACAGGAGGCGAGGGAGAGA
GAAGGCAAGGAAAAAGGGCGGGGCCAAGCAAATAGTCTCCTCGGCGTACA
AGGCCGCTTGACTGGCGAGCTCATCAAGCCTCCCGACGCGCACCGCGAAT
CTCTCTTCGCGCCCTTTTACGCTTCGGATGCAGCAGGCCCACCTGCCAAG
AAGCCGCCCTCCTATTTGGCCTCTGCCGACGGTGGGGCGAAGGAGGAAAC
GTGGTGGATGAAGGATGGAGGAGGGAGCGGAGGGGATGAGGAAGGAAACA
TGGACGAGAGTTTGACAGCACGCTTGCGGCGGCACACGCGGGAAGTGGCG
AATTTAAAGACTAAAGAGGAGAGGAAGGTGCCGCAGAGGGAAAGCAATGG
CGGAGATGGAGTGGACAGAGGGAGAAGAGGGGGAGTCGACGAGATCCAGG
ACGAAGGGCGGGAGAAGGGAGGAAGAGGAGAACAGAACGACAAGGGGGAA
AGGGATACCGGATTGAGAAGAGCTGAACAGGGAGCGGCAATGCCCTTGCT
GGTGCAACACCGTCAGCAAGAGCCTGTGACCCATTCCCACCCTGAACCCT
CCCCCTCTACCCTCTCTTTAGCTCCCTCCCTCTCCATCCCCTCGTCGAAT
CTCCCAAAGTATACCATCACAGTGGTCCCTTGGCAAAGGGCTTCATCGAT
CTCTTATCCCTCATCGACTCGTCATGCCTCATCTGGCTGCCTGGGGCTCT
TCCGCTGCACGAGCACTTGGAGCCATGCCTTCCCCTCGACCTCCTTCCCT
CCCTCTTCCTTCATAACCTATAAAATCACACTTACCCTCGGTGACTCTTT
CTCTTTTCCGCTGACATCCTGCTTTTCGTCTTCCCCCTCATTCGTTACCC
CTCCCTCGTCCTCCCCGACCTTCGTCCAGCCCTCCAGCGCCATCCCGGTT
CCCCGCACTCACACTACTATAAAGCGCTACTCGGAGCTCCTGCGTTACCA
CCGTCTTTGGTGCGAGCAGAGACTTGTGCCACGATCCCTCAAGGCCAAAT
TTCCGCCCAAAACTCTGCTGCCGCCGACGATGACGATGGGCACAGTCAGG
ACGGTGGGGCCCGTTGGGCGAATGGACGGAGATGGTGAGGCAGGTGAGGC
ATCCAGCAGCACCCTGAAGAGGGCCTACAAGCTGCAGCTCTATTTTCAAG
CCTTGCTAGACTTGAAAGAGGAAGGGACAGAGGAAGGAAGGATGCAGGGA
GGCAATTTGGTGGAATCGCCTTTGTTCTGGGCTATGTTTGCTGCCAGCGG
GCCAGAATAGTTGGGGATATGATGATTTGCGGGGCAGATCACCAGGAAAA
AGAGAAAGGGAATGTAGCATAACAAAGTGATGGAGATCATATTTATTTGT
GCCACACCTGGACGCAGCAGAGGTAAATGAAATGATTCAATCGCGCGACC
TCAAAGAATATCTACCCAGAAGCAGACAGTCAAGGGGCATATGGAGGCTT
CTGCCGAGGAGGTGAATAGTAGGGAAAAAGGAGCAAAATTTGAGAAAGAC
CAAAATAATATCTTGAGGATGGAAT
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protein sequence of NO01G00050.1

>NO01G00050.1-protein ID=NO01G00050.1-protein|Name=NO01G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MGVGLESSTSSRRPDEKANAPHQDSADAADVCHDHLRSQSVHSSGSSGSC
DGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKP
PDAHRESLFAPFYASDAAGPPAKKPPSYLASADGGAKEETWWMKDGGGSG
GDEEGNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRG
GVDEIQDEGREKGGRGEQNDKGERDTGLRRAEQGAAMPLLVQHRQQEPVT
HSHPEPSPSTLSLAPSLSIPSSNLPKYTITVVPWQRASSISYPSSTRHAS
SGCLGLFRCTSTWSHAFPSTSFPPSSFITYKITLTLGDSFSFPLTSCFSS
SPSFVTPPSSSPTFVQPSSAIPVPRTHTTIKRYSELLRYHRLWCEQRLVP
RSLKAKFPPKTLLPPTMTMGTVRTVGPVGRMDGDGEAGEASSSTLKRAYK
LQLYFQALLDLKEEGTEEGRMQGGNLVESPLFWAMFAASGPE*
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Synonyms
Publications