EWM20675.1, cds9999 (CDS) Nannochloropsis gaditana

Overview
NameEWM20675.1
Unique Namecds9999
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:50430..50933 -
Alignment locationKK037260.1:50098..50244 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20675.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100420g5.1552.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:50430..50933 -
KK037260.1supercontigKK037260.1:50098..50244 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|553186614|ref|XP_005854453.1| (hypothetical protein NGA_0210500 [Nannochloropsis gaditana CCMP526] >gi|422294606|gb|EKU21906.1| hypothetical protein NGA_0210500 [Nannochloropsis gaditana CCMP526] >gi|585100486|gb|EWM20675.1| hypothetical protein Naga_100420g5 [Nannochloropsis gaditana])

HSP 1 Score: 427.557 bits (1098), Expect = 2.725e-151
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MDRTVHKGLSSIFLIFFFFISCTRAFLLPLRFSTSSPSRVPSSTSSRPLSSLTLDSLPLPSSTRCSTSISRRRHILFDFRTFATPREDSTPSNAITSLLVRLGYQPEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARGVLEDKE 216
            MDRTVHKGLSSIFLIFFFFISCTRAFLLPLRFSTSSPSRVPSSTSSRPLSSLTLDSLPLPSSTRCSTSISRRRHILFDFRTFATPREDSTPSNAITSLLVRLGYQPEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARGVLEDKE
Sbjct:    1 MDRTVHKGLSSIFLIFFFFISCTRAFLLPLRFSTSSPSRVPSSTSSRPLSSLTLDSLPLPSSTRCSTSISRRRHILFDFRTFATPREDSTPSNAITSLLVRLGYQPEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARGVLEDKE 216          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|299115993|emb|CBN75994.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.005 bits (284), Expect = 4.522e-28
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 0
Query:   88 DSTPSNAITSLLVRLGYQ--PEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVAR 209
            D    N++   LV  G +  P E + D    +E+++  GLAG  +Y  +E+ FW IS+P+ +V +HQ+TGEWLDL+T +G+ K+   +AGFLTFAR+ +PLR  +A AL PA++KYV++ L+ +
Sbjct:   65 DEEEMNSLDKALVAWGVKSPPGEPEID---FKEKIKSAGLAGALAYGGTELAFWIISVPLAVVGYHQTTGEWLDLTTLEGKEKLFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGLLNK 185          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|1210531906|dbj|GAX09334.1| (hypothetical protein FisN_6Lh297 [Fistulifera solaris])

HSP 1 Score: 89.3521 bits (220), Expect = 1.172e-18
Identity = 40/98 (40.82%), Postives = 63/98 (64.29%), Query Frame = 0
Query:  106 PEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVI 203
            P   D +P ++ ++++D G AG+ SY   E+ FWFIS+P  + A+ Q+TG W DLS ++  AK+ A +  F+ FAR A+PLR G+A +  P + K V+
Sbjct:   79 PLTEDKNPANMMQQIKDAGKAGIISYALWELGFWFISIPFCLFAYQQATGHWPDLSNAEDTAKLGAEAFAFVNFARFAVPLRIGLALSTTPWIQKNVV 176          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|1210519052|dbj|GAX22050.1| (hypothetical protein FisN_6Hh297 [Fistulifera solaris])

HSP 1 Score: 88.9669 bits (219), Expect = 1.366e-18
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 0
Query:   69 ISRRRHILFD-FRTFATPREDSTPSNAITSLLVRLGYQ-------PEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVI 203
            ++R R  L D  +T  +   +S  + ++TS L     Q       P   D +P ++ ++++D G AG+ SY   E+ FWFIS+P  + A+ Q+TG W DLS  +  AK+ A +  F+ FAR A+PLR G+A +  P + K V+
Sbjct:   31 VTRTRLALADPSQTMESSNNNSQSAPSVTSSLGGEYMQRTAIETPPPAEDKNPANMMQQIKDAGKAGIISYALWELGFWFISIPFCLFAYQQATGHWPDLSNPEDTAKLGAEAFAFVNFARFAVPLRIGLALSTTPWIQKNVV 173          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|873224200|emb|CEM26925.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.4261 bits (215), Expect = 1.800e-16
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 0
Query:   73 RHILFDFRTFATPREDSTPSNAITSLLVRLGY--------QPEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARGV 211
            RH+   FR    PR  ST  + ++  + R           + E+   D   L E++++ G+AGV SY A+EV FW  SLP+ I AF  + G   D++  +  AKVA +SAGFL+ AR  +PLR   A AL P + KY+      +G 
Sbjct:   39 RHLPPRFRL---PRRSSTRRSGMSEQMARKQEALNATAEREAEQQLWDREKLTEKIKEAGVAGVISYGATEVAFWLTSLPLAIAAFLATFGAIPDMANGEDAAKVAVYSAGFLSIARALVPLRIAAALALTPLVGKYIKAAQTEKGA 182          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|224000900|ref|XP_002290122.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973544|gb|EED91874.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.8777 bits (198), Expect = 3.045e-14
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 0
Query:  112 DPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARG 210
            + + L ++++  G AG  SY   E+ FW +SLPV +V + Q TG W D S S+   KV A +  F+ FAR+A+PLR G+A +    +++ V++  + +G
Sbjct:  395 ETQKLLQKVKQAGTAGAISYALWELAFWGVSLPVCVVGYKQLTGHWPDFSNSEDMQKVGAEAFAFVNFARLAVPLRIGLALSTTQWIDENVVQKFMKKG 493          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|551560255|ref|XP_005767026.1| (hypothetical protein EMIHUDRAFT_461524 [Emiliania huxleyi CCMP1516] >gi|485617422|gb|EOD14597.1| hypothetical protein EMIHUDRAFT_461524 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 78.1814 bits (191), Expect = 5.421e-14
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 0
Query:   87 EDSTPSNAITS---------LLVRLGYQPEENDADPRS---LRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVI 203
            ED+ P   + S         LLV+LG + E+    P     L E+++  G AG+ SY+  E +FW  +  +  V ++Q+TG W DLS  D QAKV A +   +  AR A+PLR G+A +  P +++ ++
Sbjct:   82 EDAMPEPVVLSEKKLTAADKLLVKLGVKTEDECVVPEEGEDLMEQIKCAGRAGIVSYVIWEWIFWIGAGGIAAVTYYQATGGWPDLSNPDDQAKVGASAFALVNVARFAVPLRIGLALSTTPWVDENIV 210          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|551561626|ref|XP_005767642.1| (hypothetical protein EMIHUDRAFT_119413 [Emiliania huxleyi CCMP1516] >gi|485618164|gb|EOD15213.1| hypothetical protein EMIHUDRAFT_119413 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.411 bits (189), Expect = 7.999e-14
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 0
Query:   87 EDSTPSNAITS---------LLVRLGYQPEENDADPRS---LRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVI 203
            ED+ P   + S         LLV+LG + E+    P     L E+++  G AG+ SY+  E +FW  +  +  V ++Q+TG W DLS  D QAKV A +   +  AR A+PLR G+A +  P +++ ++
Sbjct:   79 EDAMPEPVVLSEKKLTAADKLLVKLGVKTEDECVVPEEGEDLMEQIKCAGRAGIISYVIWEWIFWIGAGGIAAVTYYQATGGWPDLSNPDDQAKVGASAFALVNVARFAVPLRIGLALSTTPWVDENIV 207          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|219112411|ref|XP_002177957.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410842|gb|EEC50771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  111 ADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVI 203
            ++ + L ++++D G AG+ SY   EV FW +S+PV I  +   TG W DLS +D  AK+ A +  F+ FAR A+PLR G+A +  P +   V+
Sbjct:   85 SEAQKLMQQVKDAGTAGIISYALWEVAFWTVSIPVVIFGYIGVTGHWPDLSDNDDIAKMGAEAFAFVNFARFAVPLRIGLALSTTPWIQNNVV 177          
BLAST of EWM20675.1 vs. NCBI_GenBank
Match: gi|551661962|ref|XP_005833747.1| (hypothetical protein GUITHDRAFT_70348 [Guillardia theta CCMP2712] >gi|428177889|gb|EKX46767.1| hypothetical protein GUITHDRAFT_70348 [Guillardia theta CCMP2712])

HSP 1 Score: 72.0182 bits (175), Expect = 3.862e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 0
Query:  119 RLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAP 196
            +++D G+AG+ +Y   E +FW IS+P  I A+HQ+TGEW      +  AKV+A   GFL  AR  +P+R  +  A AP
Sbjct:    3 KVKDAGVAGLVAYAIWEFIFWAISVPTAIFAYHQTTGEWPSFDNPESTAKVSAVIFGFLNVARALVPVRIAITLATAP 80          
The following BLAST results are available for this feature:
BLAST of EWM20675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553186614|ref|XP_005854453.1|2.725e-151100.00hypothetical protein NGA_0210500 [Nannochloropsis ... [more]
gi|299115993|emb|CBN75994.1|4.522e-2842.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210531906|dbj|GAX09334.1|1.172e-1840.82hypothetical protein FisN_6Lh297 [Fistulifera sola... [more]
gi|1210519052|dbj|GAX22050.1|1.366e-1834.97hypothetical protein FisN_6Hh297 [Fistulifera sola... [more]
gi|873224200|emb|CEM26925.1|1.800e-1636.05unnamed protein product [Vitrella brassicaformis C... [more]
gi|224000900|ref|XP_002290122.1|3.045e-1436.36predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551560255|ref|XP_005767026.1|5.421e-1434.11hypothetical protein EMIHUDRAFT_461524 [Emiliania ... [more]
gi|551561626|ref|XP_005767642.1|7.999e-1434.11hypothetical protein EMIHUDRAFT_119413 [Emiliania ... [more]
gi|219112411|ref|XP_002177957.1|1.268e-1339.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551661962|ref|XP_005833747.1|3.862e-1342.31hypothetical protein GUITHDRAFT_70348 [Guillardia ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10030rna10030Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications