EWM29661.1, cds999 (CDS) Nannochloropsis gaditana

Overview
NameEWM29661.1
Unique Namecds999
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:932278..932658 +

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Properties
Property NameValue
Protein idEWM29661.1
ProductGamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit
Orig transcript idgnl|cribi|Naga_100112g21.5444.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:932278..932658 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR019379Gamma_Secretase_Asp_P_PEN2
Homology
BLAST of EWM29661.1 vs. NCBI_GenBank
Match: gi|553179153|ref|XP_005852657.1| (hypothetical protein NGA_2091620 [Nannochloropsis gaditana CCMP526] >gi|422295876|gb|EKU23175.1| hypothetical protein NGA_2091620 [Nannochloropsis gaditana CCMP526] >gi|585112235|gb|EWM29661.1| Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit [Nannochloropsis gaditana])

HSP 1 Score: 258.84 bits (660), Expect = 2.063e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MVRTFIPQPTQDDAQVLLAKRFFVVGCLGLPWLWAVSVLYFWPKLHGNETAEQTGQAHGDSNLNREGPRVAKSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVLPYMVSAPQSYSSGW 126
            MVRTFIPQPTQDDAQVLLAKRFFVVGCLGLPWLWAVSVLYFWPKLHGNETAEQTGQAHGDSNLNREGPRVAKSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVLPYMVSAPQSYSSGW
Sbjct:    1 MVRTFIPQPTQDDAQVLLAKRFFVVGCLGLPWLWAVSVLYFWPKLHGNETAEQTGQAHGDSNLNREGPRVAKSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVLPYMVSAPQSYSSGW 126          
BLAST of EWM29661.1 vs. NCBI_GenBank
Match: gi|224013900|ref|XP_002296614.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968966|gb|EED87310.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 64.3142 bits (155), Expect = 1.392e-10
Identity = 41/128 (32.03%), Postives = 63/128 (49.22%), Query Frame = 0
Query:   15 QVLLAKRFFVVGCLGLPWLWAVSVLYF-------------WPKLHGNETAEQTGQAHGDSNLNREGPRVA---KSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVLPYMVSAPQSYSSGW 126
            ++ L+KR F VGCLGLPWLW  +VLYF             WP       +E++       +   E    +   + EL KWV RS  GA++   +  AW+I FQ+   K  +G   +++ A +  ++GW
Sbjct:   20 EITLSKRMFFVGCLGLPWLWICNVLYFRLKVFGPMVMFDYWPGQKCKYISERSAANEEGGDEENEEQLFSLRERQELEKWVKRSTRGAMLVVSVFLAWVITFQV--NKDNFGDRWFVMDATEEEATGW 145          
BLAST of EWM29661.1 vs. NCBI_GenBank
Match: gi|676390883|ref|XP_009038719.1| (hypothetical protein AURANDRAFT_29068 [Aureococcus anophagefferens] >gi|323450663|gb|EGB06543.1| hypothetical protein AURANDRAFT_29068 [Aureococcus anophagefferens])

HSP 1 Score: 56.9954 bits (136), Expect = 4.359e-8
Identity = 34/108 (31.48%), Postives = 47/108 (43.52%), Query Frame = 0
Query:    5 FIPQPTQDDAQVLLAKRFFVVGCLGLPWLWAVSVLYFWPKLHGNETAEQTGQAHGDSNLNREGPRVAKSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVL 112
            ++P+P   DA +  A+R F+VG   LP +W V V  FW  L    +  +                    ELR WV RS VG      +  AW I FQ +++ WG   L
Sbjct:   15 YLPEPKLRDADI--ARRMFLVGSCLLPVIWLVCVARFWRALAAAPSGAEA------------------EELRTWVLRSAVGLACAVAIFTAWTIIFQTKYEAWGLEFL 102          
The following BLAST results are available for this feature:
BLAST of EWM29661.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553179153|ref|XP_005852657.1|2.063e-87100.00hypothetical protein NGA_2091620 [Nannochloropsis ... [more]
gi|224013900|ref|XP_002296614.1|1.392e-1032.03predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|676390883|ref|XP_009038719.1|4.359e-831.48hypothetical protein AURANDRAFT_29068 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1000rna1000Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications