EWM29657.1, cds998 (CDS) Nannochloropsis gaditana

Overview
NameEWM29657.1
Unique Namecds998
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:931023..931929 -

Link to JBrowse

Properties
Property NameValue
Start range931023
Start range.
Protein idEWM29657.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100112g22.5440.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:931023..931929 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR022968Rbsm_biogenesis
IPR007177DUF367
IPR007209RNaseL-inhib_metal-bd_dom
Homology
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|585112231|gb|EWM29657.1| (hypothetical protein Naga_100112g22, partial [Nannochloropsis gaditana])

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0 
Query:    1 MKCSRKADAAVEGRTTSGSRRGRGGKGRGGGHSGGSHHHHHRGSRFKTREYRDGPPSDGFPLPPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLPCYYTSEEEEEEEKEEEEEKNEE 302
            MKCSRKADAAVEGRTTSGSRRGRGGKGRGGGHSGGSHHHHHRGSRFKTREYRDGPPSDGFPLPPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLPCYYTSEEEEEEEKEEEEEKNEE
Sbjct:    1 MKCSRKADAAVEGRTTSGSRRGRGGKGRGGGHSGGSHHHHHRGSRFKTREYRDGPPSDGFPLPPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLPCYYTSEEEEEEEKEEEEEKNEE 302
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|570996854|gb|ETP53377.1| (hypothetical protein F442_01705 [Phytophthora parasitica P10297])

HSP 1 Score: 243.047 bits (619), Expect = 1.308e-74
Identity = 111/189 (58.73%), Postives = 145/189 (76.72%), Query Frame = 0 
Query:   92 QRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLP 280
            +R+ FP+ L+MWDF QCD  RCTGRKL RLGYI+ MK GA FRGL+LSP  + +VS  DR +V+  G+SVIDCSWA++ E+P+ ++  GV RLLP+LVAANSVNYGRP KL+CAEA+AA L+IVGL+  A  LM EFSWG EFL++NA+ LE Y  C++S+EV EA+D++L  C  E E  R ++ +LP
Sbjct:   38 RRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEHIVSPADRTIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKQEAIQLMDEFSWGAEFLKINADCLEAYSACSNSEEVVEAQDAYLAACQTEHE-ERLQRMNLP 225
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|675180567|ref|XP_008899168.1| (hypothetical protein PPTG_06872 [Phytophthora parasitica INRA-310] >gi|566032680|gb|ETI55591.1| hypothetical protein F443_01760 [Phytophthora parasitica P1569] >gi|567970343|gb|ETK95381.1| hypothetical protein L915_01679 [Phytophthora parasitica] >gi|567998705|gb|ETL48769.1| hypothetical protein L916_01654 [Phytophthora parasitica] >gi|568027881|gb|ETM01826.1| hypothetical protein L917_01618 [Phytophthora parasitica] >gi|568058438|gb|ETM55068.1| hypothetical protein L914_01670 [Phytophthora parasitica] >gi|568100952|gb|ETN15642.1| hypothetical protein PPTG_06872 [Phytophthora parasitica INRA-310] >gi|570336358|gb|ETO84306.1| hypothetical protein F444_01767 [Phytophthora parasitica P1976] >gi|570960417|gb|ETP25396.1| hypothetical protein F441_01727 [Phytophthora parasitica CJ01A1] >gi|970660372|gb|KUF97927.1| ribosome biogenesis protein [Phytophthora nicotianae])

HSP 1 Score: 242.662 bits (618), Expect = 1.473e-74
Identity = 111/189 (58.73%), Postives = 145/189 (76.72%), Query Frame = 0 
Query:   92 QRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLP 280
            +R+ FP+ L+MWDF QCD  RCTGRKL RLGYI+ MK GA FRGL+LSP  + +VS  DR +V+  G+SVIDCSWA++ E+P+ ++  GV RLLP+LVAANSVNYGRP KL+CAEA+AA L+IVGL+  A  LM EFSWG EFL++NA+ LE Y  C++S+EV EA+D++L  C  E E  R ++ +LP
Sbjct:   38 RRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEHIVSPADRTIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKQEAIQLMDEFSWGAEFLKINADCLEAYSACSNSEEVVEAQDAYLAACQTEHE-ERLQRMNLP 225
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|669140524|ref|XP_008605830.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530742744|gb|EQC40986.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 239.195 bits (609), Expect = 2.930e-73
Identity = 111/212 (52.36%), Postives = 148/212 (69.81%), Query Frame = 0 
Query:   63 PPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRS 274
            PP +   +EE++L                 R+ FP+ L+MWDF+QCD  RCTGRKL RLGY++ MK GA FRG++LSP  +KVVSRED ++V + G+SVIDCSWAR+ E+P  ++  G  RLLP LVAAN+VNYG+PFKLTC EA+AA L+IVG++  A  LM EF WG EFL+LNAE L+ Y  C  S+EV+ A++++L  C  E  VR++
Sbjct:   38 PPDEAQGEEESDLA--------------FARRSFPVTLRMWDFNQCDAKRCTGRKLCRLGYVKSMKPGAHFRGIVLSPHGEKVVSREDLSIVTSIGISVIDCSWARVQEMPIKQIKSGSHRLLPMLVAANTVNYGKPFKLTCVEAIAATLYIVGMQDEAIQLMDEFPWGMEFLKLNAEALDAYAACETSEEVQVAQETYLTNCQAEEAVRKT 235
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|953503180|emb|CEG35948.1| (hypothetical upf0293 protein [Plasmopara halstedii])

HSP 1 Score: 239.195 bits (609), Expect = 3.664e-73
Identity = 107/190 (56.32%), Postives = 145/190 (76.32%), Query Frame = 0 
Query:   91 HQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLP 280
            ++R+ FP+ L+MWDF QCD  RCTGRKL RLGYI+ MK GA FRGL+LSP  + +VS  DR++V++ G+SVIDCSWA++ E+P+ ++  GV RLLP+LVAANSVNYGRP KL+CAEA+AA L+IVG +  A  LM EFSWG EFL++NA+ L+ Y  C +S  V EA++++L  C  E +  RS++ +LP
Sbjct:   37 YRRRAFPVTLRMWDFQQCDAKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGENIVSPADRSIVESSGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGFKEEAIQLMDEFSWGAEFLKINADCLDAYSSCENSAAVIEAQEAYLSACETEHQ-ERSQRMNLP 225
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|301090267|ref|XP_002895355.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099059|gb|EEY57111.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 236.884 bits (603), Expect = 6.250e-73
Identity = 107/183 (58.47%), Postives = 139/183 (75.96%), Query Frame = 0 
Query:   98 IKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLP 280
            + L+MWDF QCD  RCTGRKL RLGYI+ MK GA FRGL+LSP  +++VS  DR +V+  G+SVIDCSWA++ E+P+ ++  GV RLLP+LVAANSVNYGRP KL+CAEA+AA L+IVGL+  A  LM EFSWG EFL++NA+ LE Y  C +S EV EA+D++L  C  E  + R ++ +LP
Sbjct:    1 MTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQIVSPADRTIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKQEATQLMDEFSWGAEFLKINADCLEAYSACTNSTEVVEAQDAYLTACQTE-HMERLQRINLP 182
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|669140522|ref|XP_008605829.1| (hypothetical protein SDRG_02047 [Saprolegnia diclina VS20] >gi|530742743|gb|EQC40985.1| hypothetical protein SDRG_02047 [Saprolegnia diclina VS20])

HSP 1 Score: 239.195 bits (609), Expect = 1.473e-72
Identity = 111/212 (52.36%), Postives = 148/212 (69.81%), Query Frame = 0 
Query:   63 PPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRS 274
            PP +   +EE++L                 R+ FP+ L+MWDF+QCD  RCTGRKL RLGY++ MK GA FRG++LSP  +KVVSRED ++V + G+SVIDCSWAR+ E+P  ++  G  RLLP LVAAN+VNYG+PFKLTC EA+AA L+IVG++  A  LM EF WG EFL+LNAE L+ Y  C  S+EV+ A++++L  C  E  VR++
Sbjct:   38 PPDEAQGEEESDLA--------------FARRSFPVTLRMWDFNQCDAKRCTGRKLCRLGYVKSMKPGAHFRGIVLSPHGEKVVSREDLSIVTSIGISVIDCSWARVQEMPIKQIKSGSHRLLPMLVAANTVNYGKPFKLTCVEAIAATLYIVGMQDEAIQLMDEFPWGMEFLKLNAEALDAYAACETSEEVQVAQETYLTNCQAEEAVRKT 235
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|695417866|ref|XP_009527239.1| (hypothetical protein PHYSODRAFT_360634 [Phytophthora sojae] >gi|695467929|ref|XP_009539745.1| hypothetical protein PHYSODRAFT_362612 [Phytophthora sojae] >gi|348664932|gb|EGZ04769.1| hypothetical protein PHYSODRAFT_362612 [Phytophthora sojae] >gi|348678364|gb|EGZ18181.1| hypothetical protein PHYSODRAFT_360634 [Phytophthora sojae])

HSP 1 Score: 236.498 bits (602), Expect = 1.578e-72
Identity = 107/181 (59.12%), Postives = 137/181 (75.69%), Query Frame = 0 
Query:   92 QRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVR 272
            +R+ FP+ L+MWDF QCD  RCTGRKL RLGYI+ MK GA FRGL+LSP  + +VS  DR +V+  G+SVIDCSWA++ E+P+ ++  GV RLLP+LVAANSVNYGRP KL+CAEA+AA L+IVGL+  A  LM EFSWG EFL++NA+ LE Y  C DS +V  A++++L  C  E E R
Sbjct:   38 RRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGESIVSPADRGIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACEDSAQVVAAQEAYLAACQAENEQR 218
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|813171674|ref|XP_012204592.1| (hypothetical protein SPRG_10246 [Saprolegnia parasitica CBS 223.65] >gi|641530595|gb|KDO24712.1| hypothetical protein SPRG_10246 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 238.039 bits (606), Expect = 1.629e-72
Identity = 111/212 (52.36%), Postives = 148/212 (69.81%), Query Frame = 0 
Query:   63 PPGQVVHDEEANLGTNFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRS 274
            PP +   +EE++L                 R+ FP+ L+MWDF+QCD  RCTGRKL RLGY++ MK GA FRG++LSP  +KVVSRED ++V + G+SVIDCSWAR+ E+P  ++  G  RLLP LVAAN+VNYG+PFKLTC EA+AA L+IVG++  A  LM EF WG EFL+LNAE L+ Y  C  S+EV+ A++++L  C  E  VR++
Sbjct:   40 PPDETQGEEESDLA--------------FARRSFPVTLRMWDFNQCDAKRCTGRKLCRLGYVKSMKPGAHFRGIVLSPHGEKVVSREDLSIVTSIGISVIDCSWARVQEMPIKQIKSGSHRLLPMLVAANTVNYGKPFKLTCVEAIAATLYIVGMQDEAIQLMDEFPWGLEFLKLNAEALDAYAACETSEEVQVAQETYLSNCQAEEAVRKN 237
[Close]
BLAST of EWM29657.1 vs. NCBI_GenBank
Match: gi|298712806|emb|CBJ48771.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 234.187 bits (596), Expect = 6.102e-72
Identity = 116/210 (55.24%), Postives = 145/210 (69.05%), Query Frame = 0 
Query:   94 KHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRR---SEKDDLPCYYTSEEEEEEEKEEEEEKN 300
            +   + L+MWDF+QCD  +CTGRKL RLG ++EM+LGAPF GL+LSP  +  VS  DR VV+  G+SVIDCSWARL EIPF +M RG  RLLP+LVAAN VNYG+P KLTCAEA+AA L+IVG +  A  +M +F WG EFLR+N +VLE Y  CAD  EV +A+ +FL  C EE   RR   S +D +P  Y+ EEE      E   +N
Sbjct:   73 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGNHGSENGSEN 282
The following BLAST results are available for this feature:
BLAST of EWM29657.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112231|gb|EWM29657.1|0.000e+0100.00hypothetical protein Naga_100112g22, partial [Nann... [more]
gi|570996854|gb|ETP53377.1|1.308e-7458.73hypothetical protein F442_01705 [Phytophthora para... [more]
gi|675180567|ref|XP_008899168.1|1.473e-7458.73hypothetical protein PPTG_06872 [Phytophthora para... [more]
gi|669140524|ref|XP_008605830.1|2.930e-7352.36hypothetical protein, variant [Saprolegnia diclina... [more]
gi|953503180|emb|CEG35948.1|3.664e-7356.32hypothetical upf0293 protein [Plasmopara halstedii... [more]
gi|301090267|ref|XP_002895355.1|6.250e-7358.47conserved hypothetical protein [Phytophthora infes... [more]
gi|669140522|ref|XP_008605829.1|1.473e-7252.36hypothetical protein SDRG_02047 [Saprolegnia dicli... [more]
gi|695417866|ref|XP_009527239.1|1.578e-7259.12hypothetical protein PHYSODRAFT_360634 [Phytophtho... [more]
gi|813171674|ref|XP_012204592.1|1.629e-7252.36hypothetical protein SPRG_10246 [Saprolegnia paras... [more]
gi|298712806|emb|CBJ48771.1|6.102e-7255.24conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna999rna999Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications