EWM20709.1, cds9964 (CDS) Nannochloropsis gaditana

Overview
NameEWM20709.1
Unique Namecds9964
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:85736..85764 -
Alignment locationKK037259.1:85156..85319 -
Alignment locationKK037259.1:84805..84978 -
Alignment locationKK037259.1:84494..84645 -
Alignment locationKK037259.1:84200..84326 -
Alignment locationKK037259.1:84114..84124 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20709.1
ProductAmmonium transporter AmtB-like protein
Orig transcript idgnl|cribi|Naga_100551g3.4021.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:85736..85764 -
KK037259.1supercontigKK037259.1:85156..85319 -
KK037259.1supercontigKK037259.1:84805..84978 -
KK037259.1supercontigKK037259.1:84494..84645 -
KK037259.1supercontigKK037259.1:84200..84326 -
KK037259.1supercontigKK037259.1:84114..84124 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0008519ammonium transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015696ammonium transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024041NH4_transpt_AmtB-like_dom
IPR029020Ammonium/urea_transptr
IPR002229RhesusRHD
Homology
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|585100544|gb|EWM20709.1| (Ammonium transporter AmtB-like protein [Nannochloropsis gaditana])

HSP 1 Score: 445.662 bits (1145), Expect = 1.876e-158
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MPPIAVACSSKNHLQTATSISPLQVPVRKMEDVHGRSGLAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGSP 218
            MPPIAVACSSKNHLQTATSISPLQVPVRKMEDVHGRSGLAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGSP
Sbjct:    1 MPPIAVACSSKNHLQTATSISPLQVPVRKMEDVHGRSGLAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGSP 218          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|638246216|ref|NP_001279347.1| (Rh-associated glycoprotein [Callorhinchus milii] >gi|392884328|gb|AFM90996.1| RhAG-like protein [Callorhinchus milii])

HSP 1 Score: 147.902 bits (372), Expect = 1.219e-38
Identity = 73/179 (40.78%), Postives = 116/179 (64.80%), Query Frame = 0
Query:   39 LAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            L F +  + ++ +I+V + ++ +Y   A+   P+ +++ +    LY S+  VH+M+  GFG LMTF+ R+G+S+ G+  L+   GLQW  +M  F H L  +GK++   + +T +  GDF  A VLI+FGA++GK SP QL++L  LEI ++AA+E  V EVL+A+DVG SM IH FG+
Sbjct:   11 LKFSLLAIALEVVIIVQYALFATYETAADSRKPNGTTTDFD--RLYPSFQDVHVMIFVGFGFLMTFLKRYGFSSVGFNLLIAAFGLQWGALMQGFLHHL-HDGKIK---IGITSMINGDFSTATVLITFGAILGKTSPVQLLILTVLEITIFAANEFLVGEVLKAKDVGASMTIHAFGA 183          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|632970094|ref|XP_007901455.1| (PREDICTED: ammonium transporter Rh type A isoform X2 [Callorhinchus milii])

HSP 1 Score: 145.976 bits (367), Expect = 3.906e-38
Identity = 73/179 (40.78%), Postives = 116/179 (64.80%), Query Frame = 0
Query:   39 LAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            L F +  + ++ +I+V + ++ +Y   A+   P+ +++ +    LY S+  VH+M+  GFG LMTF+ R+G+S+ G+  L+   GLQW  +M  F H L  +GK++   + +T +  GDF  A VLI+FGA++GK SP QL++L  LEI ++AA+E  V EVL+A+DVG SM IH FG+
Sbjct:   11 LKFSLLAIALEVVIIVQYALFVTYETAADSRKPNGTTTDFD--RLYPSFQDVHVMIFVGFGFLMTFLKRYGFSSVGFNLLIAAFGLQWGALMQGFLHHL-HDGKIK---IGITSMINGDFSTATVLITFGAILGKTSPVQLLILTVLEITIFAANEFLVGEVLKAKDVGASMTIHAFGA 183          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|387914340|gb|AFK10779.1| (Rhag [Callorhinchus milii])

HSP 1 Score: 146.362 bits (368), Expect = 4.542e-38
Identity = 73/179 (40.78%), Postives = 116/179 (64.80%), Query Frame = 0
Query:   39 LAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            L F +  + ++ +I+V + ++ +Y   A+   P+ +++ +    LY S+  VH+M+  GFG LMTF+ R+G+S+ G+  L+   GLQW  +M  F H L  +GK++   + +T +  GDF  A VLI+FGA++GK SP QL++L  LEI ++AA+E  V EVL+A+DVG SM IH FG+
Sbjct:   11 LKFSLLAIALEVVIIVQYALFVTYETAADSRKPNGTTTDFD--RLYPSFQDVHVMIFVGFGFLMTFLKRYGFSSVGFNLLIAAFGLQWGALMQGFLHHL-HDGKIK---IGITSMINGDFSTATVLITFGAILGKTSPVQLLILTVLEITIFAANEFLVGEVLKAKDVGASMTIHAFGA 183          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|1018198555|gb|AMY50362.1| (glycoprotein [Acipenser schrenckii])

HSP 1 Score: 137.117 bits (344), Expect = 1.106e-34
Identity = 71/180 (39.44%), Postives = 112/180 (62.22%), Query Frame = 0
Query:   41 FPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTA---TTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            FP+  + ++ LI+V++ ++ SY   +       S+ + T+   + LY  +  VH+M+  GFG LMTF+ ++ +S+ G   L+  LGLQW +++  FWH  +  GK+    +D+  +   DF  A VLISFGA++GK SP QL+++  LEI V+A +E  V+EVL A DVG SM+IH FG+
Sbjct:   13 FPILALFLEILIIVLFGVFVSYKDSSHDDHKQASNDTITSVRFSQLYPMFQDVHVMIFIGFGFLMTFLKKYSFSSVGINMLLAALGLQWGILVQGFWH--LHHGKIE---IDILKMINADFSTATVLISFGAVLGKTSPVQLLIMTILEITVFAMNEHLVAEVLGANDVGASMIIHAFGA 187          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|695410678|ref|XP_009525262.1| (hypothetical protein PHYSODRAFT_494867 [Phytophthora sojae] >gi|348682729|gb|EGZ22545.1| hypothetical protein PHYSODRAFT_494867 [Phytophthora sojae])

HSP 1 Score: 136.732 bits (343), Expect = 2.725e-34
Identity = 77/177 (43.50%), Postives = 104/177 (58.76%), Query Frame = 0
Query:   41 FPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            F M+LV+ + + L+ + +           A S S+ SY     Y  ++ VH+M+  GFG LMTF+ ++  SA G  FL+  L LQW VIM    H +IG+       LD+  +  GDF   AVLISFGA++GK +PTQL+ + FLEII YA +E  V E   A D GGSMVIHTFG+
Sbjct:   44 FAMSLVLFEAVCLIFFALKFEMPSPDNSDAESASTLSY-----YPFYMDVHVMIYIGFGFLMTFLRKYSMSAVGLNFLIGVLSLQWGVIMVTMAHQIIGD-DYHTKILDIPTMINGDFAAGAVLISFGAVLGKTTPTQLVWMTFLEIIFYAINEYLVYEQFLATDAGGSMVIHTFGA 214          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|431836474|gb|AGA93878.1| (RhAG [Porichthys notatus])

HSP 1 Score: 135.576 bits (340), Expect = 3.510e-34
Identity = 68/183 (37.16%), Postives = 113/183 (61.75%), Query Frame = 0
Query:   39 LAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSY----TATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            L FP+  +V++ + ++++ ++  Y  D +G     S+ ++       TLY  +  VH+M+  GFG LMTF+ ++G+S+ G   L+   GLQW ++M  FWH  +  GK++   +D+  +   DF  A VLISFGA++GK SP QL+++  LEI +++ +E  V+ VL A DVG SM+IH +G+
Sbjct:   10 LKFPIVALVLEIITIILYAVFVDY-DDGKGHGHGHSNETHPEEQNPMTLYPMFQDVHVMIFIGFGFLMTFLKKYGFSSVGVNLLLAAFGLQWGLLMQGFWH--LDNGKIK---VDIFKIINADFSTATVLISFGAVLGKTSPVQLLIMTILEITIFSINEHLVATVLEANDVGASMIIHAYGA 186          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|727002654|ref|XP_010391499.1| (ammonium transporter Rh type A [Corvus cornix cornix])

HSP 1 Score: 134.42 bits (337), Expect = 1.093e-33
Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 0
Query:   32 DVHGRSGLAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            D        F +  ++++ +I+V++ ++  Y      TAP           LY  +  VH+M+  GFG LMTF+ ++G+S+ G+  L+   GLQW ++M  FWH  + EGK+    +D+  +   DF  A  LISFGAL+GK SP Q+++L  LEI ++A +E  V+EVL A DVG SM IH FG+
Sbjct:    4 DFDTNMRFKFSILALLLEAIIIVLFGIFVDY-----DTAPLHEH-------LYPYFQDVHVMIFVGFGFLMTFLKKYGFSSVGFNMLIAAFGLQWGILMQGFWH--MNEGKI---IVDIKSMINADFSTATALISFGALLGKTSPVQMLILTLLEITIFACNEHLVTEVLEATDVGASMTIHAFGA 172          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|676424362|gb|KFO65342.1| (Ammonium transporter Rh type A, partial [Corvus brachyrhynchos])

HSP 1 Score: 133.65 bits (335), Expect = 1.333e-33
Identity = 70/177 (39.55%), Postives = 107/177 (60.45%), Query Frame = 0
Query:   41 FPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            F +  ++++ +I+V++ ++  Y      TAP           LY  +  VH+M+  GFG LMTF+ ++G+S+ G+  L+   GLQW ++M  FWH  + EGK+    +D+  +   DF  A  LISFGAL+GK SP Q+++L  LEI ++A +E  V+EVL A DVG SM IH FG+
Sbjct:    5 FSILALLLEAIIIVLFGIFVDY-----DTAPLHEH-------LYPYFQDVHVMIFVGFGFLMTFLKKYGFSSVGFNMLIAAFGLQWGILMQGFWH--MNEGKI---IVDIKSMINADFSTATALISFGALLGKTSPVQMLILTLLEITIFACNEHLVTEVLEATDVGASMTIHAFGA 164          
BLAST of EWM20709.1 vs. NCBI_GenBank
Match: gi|1049450921|ref|XP_017600451.1| (PREDICTED: ammonium transporter Rh type A [Corvus brachyrhynchos])

HSP 1 Score: 134.035 bits (336), Expect = 1.927e-33
Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 0
Query:   32 DVHGRSGLAFPMTLVVMQGLILVIWTMYGSYAPDAEGTAPSPSSSSYTATTLYQSWLGVHIMMLFGFGNLMTFMHRHGYSASGYTFLVTCLGLQWCVIMYAFWHGLIGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAASEAFVSEVLRAEDVGGSMVIHTFGS 217
            D        F +  ++++ +I+V++ ++  Y      TAP           LY  +  VH+M+  GFG LMTF+ ++G+S+ G+  L+   GLQW ++M  FWH  + EGK+    +D+  +   DF  A  LISFGAL+GK SP Q+++L  LEI ++A +E  V+EVL A DVG SM IH FG+
Sbjct:    4 DFDTNMRFKFSILALLLEAIIIVLFGIFVDY-----DTAPLHEH-------LYPYFQDVHVMIFVGFGFLMTFLKKYGFSSVGFNMLIAAFGLQWGILMQGFWH--MNEGKI---IVDIKSMINADFSTATALISFGALLGKTSPVQMLILTLLEITIFACNEHLVTEVLEATDVGASMTIHAFGA 172          
The following BLAST results are available for this feature:
BLAST of EWM20709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100544|gb|EWM20709.1|1.876e-158100.00Ammonium transporter AmtB-like protein [Nannochlor... [more]
gi|638246216|ref|NP_001279347.1|1.219e-3840.78Rh-associated glycoprotein [Callorhinchus milii] >... [more]
gi|632970094|ref|XP_007901455.1|3.906e-3840.78PREDICTED: ammonium transporter Rh type A isoform ... [more]
gi|387914340|gb|AFK10779.1|4.542e-3840.78Rhag [Callorhinchus milii][more]
gi|1018198555|gb|AMY50362.1|1.106e-3439.44glycoprotein [Acipenser schrenckii][more]
gi|695410678|ref|XP_009525262.1|2.725e-3443.50hypothetical protein PHYSODRAFT_494867 [Phytophtho... [more]
gi|431836474|gb|AGA93878.1|3.510e-3437.16RhAG [Porichthys notatus][more]
gi|727002654|ref|XP_010391499.1|1.093e-3338.17ammonium transporter Rh type A [Corvus cornix corn... [more]
gi|676424362|gb|KFO65342.1|1.333e-3339.55Ammonium transporter Rh type A, partial [Corvus br... [more]
gi|1049450921|ref|XP_017600451.1|1.927e-3338.17PREDICTED: ammonium transporter Rh type A [Corvus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9995rna9995Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications