EWM20718.1, cds9956 (CDS) Nannochloropsis gaditana

Overview
NameEWM20718.1
Unique Namecds9956
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:59619..59829 +
Alignment locationKK037259.1:59935..60054 +
Alignment locationKK037259.1:60331..60743 +
Alignment locationKK037259.1:60861..60929 +
Alignment locationKK037259.1:61187..61249 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20718.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100385g3.2320.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:59619..59829 +
KK037259.1supercontigKK037259.1:59935..60054 +
KK037259.1supercontigKK037259.1:60331..60743 +
KK037259.1supercontigKK037259.1:60861..60929 +
KK037259.1supercontigKK037259.1:61187..61249 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20718.1 vs. NCBI_GenBank
Match: gi|585100564|gb|EWM20718.1| (hypothetical protein Naga_100385g3 [Nannochloropsis gaditana])

HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MSYLLPSTIAIPRWRLPFPQYFSLPLLLLLVVDLLNRTHAFQAGRLALKHLNEGIRSPPLMLQRPCWPLRVKGADLPPSSSSTTAAVTSSSSYTQAASVAILRDAARHRKVDKSQVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVWEGNKMTFGFNRFELGPLSLQLGKKMKFYTFFWVDDQIACARSSTGGLTLMLVNSER 291
            MSYLLPSTIAIPRWRLPFPQYFSLPLLLLLVVDLLNRTHAFQAGRLALKHLNEGIRSPPLMLQRPCWPLRVKGADLPPSSSSTTAAVTSSSSYTQAASVAILRDAARHRKVDKSQVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVWEGNKMTFGFNRFELGPLSLQLGKKMKFYTFFWVDDQIACARSSTGGLTLMLVNSER
Sbjct:    1 MSYLLPSTIAIPRWRLPFPQYFSLPLLLLLVVDLLNRTHAFQAGRLALKHLNEGIRSPPLMLQRPCWPLRVKGADLPPSSSSTTAAVTSSSSYTQAASVAILRDAARHRKVDKSQVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVWEGNKMTFGFNRFELGPLSLQLGKKMKFYTFFWVDDQIACARSSTGGLTLMLVNSER 291          
BLAST of EWM20718.1 vs. NCBI_GenBank
Match: gi|553194203|ref|XP_005855905.1| (hypothetical protein NGA_0555900 [Nannochloropsis gaditana CCMP526] >gi|422293149|gb|EKU20449.1| hypothetical protein NGA_0555900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.8 bits (460), Expect = 3.865e-54
Identity = 124/142 (87.32%), Postives = 126/142 (88.73%), Query Frame = 0
Query:  102 LRDAARHRKVDKSQVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVWEGNKMTFG 243
            LR +     V  S VIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYV     +  G
Sbjct:    6 LRHSCCKGPVGLSVVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVLHAQGVALG 147          
BLAST of EWM20718.1 vs. NCBI_GenBank
Match: gi|299115671|emb|CBN75871.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 2.259e-7
Identity = 58/190 (30.53%), Postives = 79/190 (41.58%), Query Frame = 0
Query:  100 AILRDAARHRKVDKSQVIAALEVLEGSKLPSPSSKKPGILSTLFPASGTPSLLSSLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSSPSSSPSSSPSAPLPASRPIRIDTSAAGGLLPLGCVVGDYVWEG---NKMTFGFNRFELGPLSLQLGK-KMKFYTFFWVDDQIACARSSTGGLTLM 285
            A+LR A   RKV  ++V  AL VL                       G+P     L     D  G WE+VFS+ L +GYMP  + E+V                    P+     ID +A  G LP+G + G   W G   N++ F     +LGP      K ++K Y FF  D ++  ARSS GG  L+
Sbjct:   75 AVLRTAVETRKVPMTEVSEALRVLAAD-------------------GGSP-----LACGAEDVEGSWELVFSTQLKSGYMP--IRELVGF-----------------YPSREEASIDATA--GPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGFALL 219          
The following BLAST results are available for this feature:
BLAST of EWM20718.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100564|gb|EWM20718.1|0.000e+0100.00hypothetical protein Naga_100385g3 [Nannochloropsi... [more]
gi|553194203|ref|XP_005855905.1|3.865e-5487.32hypothetical protein NGA_0555900 [Nannochloropsis ... [more]
gi|299115671|emb|CBN75871.1|2.259e-730.53expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9987rna9987Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications