EWM20732.1, cds9941 (CDS) Nannochloropsis gaditana

Overview
NameEWM20732.1
Unique Namecds9941
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:17173..17220 +
Alignment locationKK037259.1:17313..17519 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20732.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100261g6.1649.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:17173..17220 +
KK037259.1supercontigKK037259.1:17313..17519 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20732.1 vs. NCBI_GenBank
Match: gi|585100591|gb|EWM20732.1| (hypothetical protein Naga_100261g6 [Nannochloropsis gaditana])

HSP 1 Score: 172.94 bits (437), Expect = 8.673e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MESLRAVLEQGPQSLQMVYVVSGRDVPLQPPAVLFSTHRTHTEGRPYLIHPGRSILCKAERRWQRALKSKVRGSVSILSMGCDS 84
            MESLRAVLEQGPQSLQMVYVVSGRDVPLQPPAVLFSTHRTHTEGRPYLIHPGRSILCKAERRWQRALKSKVRGSVSILSMGCDS
Sbjct:    1 MESLRAVLEQGPQSLQMVYVVSGRDVPLQPPAVLFSTHRTHTEGRPYLIHPGRSILCKAERRWQRALKSKVRGSVSILSMGCDS 84          
BLAST of EWM20732.1 vs. NCBI_GenBank
Match: gi|585111696|gb|EWM29176.1| (hypothetical protein Naga_100007g62 [Nannochloropsis gaditana])

HSP 1 Score: 54.6842 bits (130), Expect = 9.848e-7
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 MESLRAVLEQGPQSLQMVYVVSGRDVPLQPPAVLFSTHRTHTEGRPYLIHPGRSIL 56
            ++SL+AVLE G  S+ M+Y+VSG D+P+QPP+ LF+T    TEG    + P RS++
Sbjct:  157 IKSLQAVLE-GDTSVGMIYIVSGYDIPIQPPSALFTTRSVITEGVFKNVVPFRSVI 211          
The following BLAST results are available for this feature:
BLAST of EWM20732.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100591|gb|EWM20732.1|8.673e-55100.00hypothetical protein Naga_100261g6 [Nannochloropsi... [more]
gi|585111696|gb|EWM29176.1|9.848e-748.21hypothetical protein Naga_100007g62 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9972rna9972Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications