EWM20761.1, cds9910 (CDS) Nannochloropsis gaditana

Overview
NameEWM20761.1
Unique Namecds9910
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:42625..42788 +
Alignment locationKK037258.1:42933..43034 +
Alignment locationKK037258.1:43194..43306 +
Alignment locationKK037258.1:43482..43566 +
Alignment locationKK037258.1:43752..43968 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20761.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100405g3.2128.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:42625..42788 +
KK037258.1supercontigKK037258.1:42933..43034 +
KK037258.1supercontigKK037258.1:43194..43306 +
KK037258.1supercontigKK037258.1:43482..43566 +
KK037258.1supercontigKK037258.1:43752..43968 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20761.1 vs. NCBI_GenBank
Match: gi|585100636|gb|EWM20761.1| (hypothetical protein Naga_100405g3 [Nannochloropsis gaditana])

HSP 1 Score: 468.389 bits (1204), Expect = 3.864e-167
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MHPYIPLFSPPFFSCPLLSQTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRSEKASTVRKEGGKTLLTRGGGMKGRRRGQRRAPCFPVRELLYELHL 226
            MHPYIPLFSPPFFSCPLLSQTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRSEKASTVRKEGGKTLLTRGGGMKGRRRGQRRAPCFPVRELLYELHL
Sbjct:    1 MHPYIPLFSPPFFSCPLLSQTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRSEKASTVRKEGGKTLLTRGGGMKGRRRGQRRAPCFPVRELLYELHL 226          
BLAST of EWM20761.1 vs. NCBI_GenBank
Match: gi|553192159|ref|XP_005855524.1| (hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526] >gi|422293536|gb|EKU20836.1| hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 338.191 bits (866), Expect = 3.339e-116
Identity = 161/162 (99.38%), Postives = 162/162 (100.00%), Query Frame = 0
Query:   20 QTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRS 181
            +TLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRS
Sbjct:   26 KTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREEGKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSRS 187          
BLAST of EWM20761.1 vs. NCBI_GenBank
Match: gi|552817289|ref|XP_005844900.1| (hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis] >gi|307104545|gb|EFN52798.1| hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis])

HSP 1 Score: 72.0182 bits (175), Expect = 3.981e-11
Identity = 58/173 (33.53%), Postives = 78/173 (45.09%), Query Frame = 0
Query:   31 KETWNDFYRRSSAFFGVREVCDCYREE---GKAPH------VENRYYVNEEKDLRVSFIGWFGNHPPRGHAIPASAPLTQDALGCAPGACQGPVNWEAPVSSLLQGSFLRATVR---PTHLFLNAGLWGPISGAVLSD---VVEAAKNLSTSEHVD-VFWKTTT-SRSEKAST 186
            +  WNDF R +SA FG RE+CDCYR E   G  P        ENR+++  +    VS    +   P   H      P       CAP  C    +W   ++       LR  VR   PTH+ +N+G+WG  S A   D    + AA   S  E +  V W+TTT +R  +A T
Sbjct:  169 EHDWNDFLRGTSALFGGRELCDCYRREYILGVTPRPPEKEKFENRFFITADGATAVSHFT-YTTAPHTVHGHFGFPPHLMGQTPCAPATCNQTADWAFDLA-------LRRVVRPLQPTHVIINSGMWGS-SNAFGDDKWRSIAAAGLYSVFEQLGRVIWRTTTAARGPRAPT 332          
BLAST of EWM20761.1 vs. NCBI_GenBank
Match: gi|551674288|ref|XP_005839899.1| (hypothetical protein GUITHDRAFT_133326 [Guillardia theta CCMP2712] >gi|428184063|gb|EKX52919.1| hypothetical protein GUITHDRAFT_133326 [Guillardia theta CCMP2712])

HSP 1 Score: 61.2326 bits (147), Expect = 2.317e-7
Identity = 52/180 (28.89%), Postives = 77/180 (42.78%), Query Frame = 0
Query:   33 TWNDFYRRSSAFFGVREVCDCYREEGK-APHVENRYYVNE------EKDLRVSFIGWFGNHPPRGH-----------------------AIPASAP-LTQDALGCAPGACQGP-VNWEAPVSSLLQGSFLRATVRPTHLFLNAGLWGPISGAVLSDVVEAAKNLSTSEHVDVFWKTTTSR 180
            TW  FY  SS  F  RE+CDCYR EG  +P  E R   N         +L +S++  FG  P  GH                       A+ A+A  LT++     P    G   +W+  V ++L+   + + ++P  L  N GLWG +      + V AA + +  +    +WK TT R
Sbjct:  767 TWRRFYLDSSRSFQGRELCDCYRPEGPWSPEFEMRVEENRFFSLLPPSNLSLSYLQVFGGFPMHGHFPGECRQRSSSSSSCSFHNLSRAALTAAAKVLTEEEYDHNPQLDTGSFFDWQGDVPTVLE--HVASEMQPDMLVFNTGLWGELKEEDYVEDVFAAGSRAVGKGGSCYWKRTTKR 944          
The following BLAST results are available for this feature:
BLAST of EWM20761.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100636|gb|EWM20761.1|3.864e-167100.00hypothetical protein Naga_100405g3 [Nannochloropsi... [more]
gi|553192159|ref|XP_005855524.1|3.339e-11699.38hypothetical protein NGA_0609100 [Nannochloropsis ... [more]
gi|552817289|ref|XP_005844900.1|3.981e-1133.53hypothetical protein CHLNCDRAFT_138448 [Chlorella ... [more]
gi|551674288|ref|XP_005839899.1|2.317e-728.89hypothetical protein GUITHDRAFT_133326 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9941rna9941Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications