EWM20765.1, cds9909 (CDS) Nannochloropsis gaditana

Overview
NameEWM20765.1
Unique Namecds9909
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:40932..40966 +
Alignment locationKK037258.1:41233..41333 +
Alignment locationKK037258.1:41505..41623 +
Alignment locationKK037258.1:41874..42445 +

Link to JBrowse

Properties
Property NameValue
End range.
End range42445
Protein idEWM20765.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100907g2.10528.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:40932..40966 +
KK037258.1supercontigKK037258.1:41233..41333 +
KK037258.1supercontigKK037258.1:41505..41623 +
KK037258.1supercontigKK037258.1:41874..42445 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR026057PC-Esterase
Homology
[Close]
BLAST of EWM20765.1 vs. NCBI_GenBank
Match: gi|585100641|gb|EWM20765.1| (hypothetical protein Naga_100907g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 
Query:    1 MKTVVNFLHLQRYHRGAAMTIFPAWPNQETRTWSVWSLAAGLLIVALASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNNAWGPEAAGALNGTVDGSRGSDASSLEDSAELPPLPSLGPPAPSSFLPPCSYSILQAAPDSVKWTVAATKGGRAGGKEGEADGMTYTPRHALCVLRGFDGLTSGKGEGGAKGGGEGGEEAYACLRGKHLVFMGDSLSRYQYLSLIRYLEEG 276
            MKTVVNFLHLQRYHRGAAMTIFPAWPNQETRTWSVWSLAAGLLIVALASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNNAWGPEAAGALNGTVDGSRGSDASSLEDSAELPPLPSLGPPAPSSFLPPCSYSILQAAPDSVKWTVAATKGGRAGGKEGEADGMTYTPRHALCVLRGFDGLTSGKGEGGAKGGGEGGEEAYACLRGKHLVFMGDSLSRYQYLSLIRYLEEG
Sbjct:    1 MKTVVNFLHLQRYHRGAAMTIFPAWPNQETRTWSVWSLAAGLLIVALASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNNAWGPEAAGALNGTVDGSRGSDASSLEDSAELPPLPSLGPPAPSSFLPPCSYSILQAAPDSVKWTVAATKGGRAGGKEGEADGMTYTPRHALCVLRGFDGLTSGKGEGGAKGGGEGGEEAYACLRGKHLVFMGDSLSRYQYLSLIRYLEEG 276
[Close]
BLAST of EWM20765.1 vs. NCBI_GenBank
Match: gi|553192156|ref|XP_005855523.1| (hypothetical protein NGA_0609000, partial [Nannochloropsis gaditana CCMP526] >gi|422293535|gb|EKU20835.1| hypothetical protein NGA_0609000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.009 bits (554), Expect = 4.069e-69
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0 
Query:   44 IVALASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNNAWGPEAAGALNGTVDGSRGSDASSLED 153
            +V LASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNN+WGPEAAGALNGTVDGSRGSDASSLED
Sbjct:    1 MVTLASSLLAVMDPSALILTRHMKDGGSGSGTSTPFLLRHQEPRYAPLRVPDAHLPETDPRRRKKSEGGKKGGQSHEKEVSNNSWGPEAAGALNGTVDGSRGSDASSLED 110
The following BLAST results are available for this feature:
BLAST of EWM20765.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100641|gb|EWM20765.1|0.000e+0100.00hypothetical protein Naga_100907g2, partial [Nanno... [more]
gi|553192156|ref|XP_005855523.1|4.069e-6997.27hypothetical protein NGA_0609000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9940rna9940Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications