EWM20782.1, cds9886 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|585100668|gb|EWM20782.1| (exoribonuclease 2, partial [Nannochloropsis gaditana]) HSP 1 Score: 882.863 bits (2280), Expect = 0.000e+0 Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0 Query: 1 EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL 437 EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL Sbjct: 1 EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL 437
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|546305305|ref|XP_005712599.1| (unnamed protein product [Chondrus crispus] >gi|507108926|emb|CDF32798.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 86.2705 bits (212), Expect = 1.235e-14 Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 0 Query: 26 KLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMY---ETGAAFSLNLLMDTV 145 K +D E++ R LLW + MY+DG+C DY + Y + PS L+ +I++ +N F + P + T PL P A A++PR +HL+P+ + V+++ A +++ + F+L +D + Sbjct: 189 KFYDTERFFRALLWTLHMYIDGFCSDYTFQYAKPYGPSCDVLSKYIKD---HNGDPFVIQAPVANTSPLRPYQAAAAMLPRHAVHLLPKPVQQVVQNPALSKRLFLPKDEVNIFALVQAIDEI 308
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|470447366|ref|XP_004340059.1| (5'3' exoribonuclease, putative [Acanthamoeba castellanii str. Neff] >gi|440796943|gb|ELR18040.1| 5'3' exoribonuclease, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 77.411 bits (189), Expect = 1.932e-11 Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0 Query: 29 DEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHP 150 D E YL+GL W ++MY++G+CPD ++ Y HR AP+A L +F + +N S + ++VP S T PL P CL V+P L E L + +++ ++ L+D V S P Sbjct: 683 DPEAYLQGLFWCLKMYMEGFCPDNKWFYTHRHAPTALQLRNFFADAGASN-SFYPVTVPRSATLPLPPHKFCLTVLPLQARELAHEMLQPYMALDSKLGSIFREPTLLVDVQLIDAVLSEIP 803
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|544212698|ref|XP_005536497.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017059|dbj|BAM80461.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 73.9442 bits (180), Expect = 2.072e-10 Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0 Query: 24 EEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNAS-SFALSVPTSLTPPLHPALACLAVMPRWGLHLVPE 114 +EKL+D E++LR LLW + MY+DG+CPD+ + Y + PSA +D +R +N+ L P S+ PPL P A LA++P L+P+ Sbjct: 419 DEKLYDTEEWLRTLLWALAMYIDGFCPDFYHTYSRAYGPSA---SDIVRWLKENDGDPLLQLQPPLSVAPPLPPHAALLALVPASAARLLPQ 507
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|298715566|emb|CBJ28119.1| (5\'->3\' exoribonuclease, putative [Ectocarpus siliculosus]) HSP 1 Score: 71.2478 bits (173), Expect = 1.573e-9 Identity = 30/79 (37.97%), Postives = 52/79 (65.82%), Query Frame = 0 Query: 27 LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMP 105 LFD E +L G+LWN+QMY+DGY P + + Y R++PS + +++ +++ ++ L+VP PPL ++ACL ++P Sbjct: 472 LFDVESFLLGVLWNLQMYIDGYVPSFYWRYSPRYSPSCADIVSWVKLASEDKLAN--LAVPVVGAPPLPASIACLCMLP 548
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|551632483|ref|XP_005819111.1| (hypothetical protein GUITHDRAFT_121693 [Guillardia theta CCMP2712] >gi|428163037|gb|EKX32131.1| hypothetical protein GUITHDRAFT_121693 [Guillardia theta CCMP2712]) HSP 1 Score: 65.855 bits (159), Expect = 8.120e-8 Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 0 Query: 31 EQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVL 120 E+YL+G+LWN++MY+DG+ PD+++ Y + PS+ + ++I ++ K +L +S + PL PA CLAV P +P ++L Sbjct: 384 ERYLKGVLWNIKMYIDGFVPDFEFMYSFKKGPSSSSVVNWIESKVKP-----SLKAESSNSRPLAPAELCLAVTPVRAADRLPLQYRNIL 468
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|923122074|ref|XP_013754507.1| (hypothetical protein AMSG_08726 [Thecamonas trahens ATCC 50062] >gi|906559998|gb|KNC53241.1| hypothetical protein AMSG_08726 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 65.0846 bits (157), Expect = 1.242e-7 Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 33 YLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMY 130 Y G+LW +Q Y G PDY +AY AP+ LA+ + Q + A+ + VPTS TPPL PA +A++P ++P L +++E+ + + +Y Sbjct: 549 YFSGVLWTLQTYRTGIVPDYGFAYTANRAPTVLSLANVLVTQPETLATY--VRVPTSATPPLAPAACLMALLPYAARDVLPGPLRALMEADSPLADLY 644
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|1210526292|dbj|GAX15210.1| (5'-3' exoribonuclease 1 [Fistulifera solaris]) HSP 1 Score: 63.5438 bits (153), Expect = 4.719e-7 Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 0 Query: 33 YLRGLLWNVQMYVDGYCPDYQYAY-RHRFAPSAQCLADFIRNQTKNNASSFAL-SVPTSLTPPLHPALACLAVMPRWGLHLVPE---NLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQN-FHWTEIKANT 167 YL GLLW +Q Y DG C DY + Y R APSA+ L ++ Q K S + S+ TPP+ +ACLA +P + E L S + + ET F++ L N S + FH +E KA++ Sbjct: 510 YLYGLLWTLQTYQDGACADYGFQYGDRRLAPSAKDLVEYFE-QAKAAGRSIGISSLRNGYTPPVAAGIACLAALPLQAKEYIAEPYKYLDDEFVESTFQSCVNETSLTFNMKLFAHLCNDEVKKRALSDDRFHISEPKAHS 649 The following BLAST results are available for this feature:
BLAST of EWM20782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|