EWM20782.1, cds9886 (CDS) Nannochloropsis gaditana

Overview
NameEWM20782.1
Unique Namecds9886
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:120240..120409 +
Alignment locationKK037257.1:120563..120709 +
Alignment locationKK037257.1:121031..121140 +
Alignment locationKK037257.1:121436..122322 +

Link to JBrowse

Properties
Property NameValue
Start range120240
Start range.
Protein idEWM20782.1
Productexoribonuclease 2
Partialtrue
Orig transcript idgnl|cribi|Naga_100423g4.2493.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:120240..120409 +
KK037257.1supercontigKK037257.1:120563..120709 +
KK037257.1supercontigKK037257.1:121031..121140 +
KK037257.1supercontigKK037257.1:121436..122322 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|585100668|gb|EWM20782.1| (exoribonuclease 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 882.863 bits (2280), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL 437
            EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL
Sbjct:    1 EEEEGLEGRTEGGEEEEVVDWRYEEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQNFHWTEIKANTPCASPTPSSSPPSSSSSTSPPPSLSLHLPPLSRARKVAATQSPPLRSWVQSPSLLVSTPMPKKWKDTWKREVKEEERWGGKKSEASKAGRGRKGEDGGGGQGKAGKAKSSPTSGDMGSEGGKKGRSTAVPRRNGAGFQPSRGKRKKSSEAPCPPSVPPSLPPTPVKLGQRSTPSPAASLLDRAQVLPARVPGSNHPSSPSSGASFFPSKPDFSSHDLDGPGEFPIPSSSLPPKKRGRPRSPPKARMMWDVAAEHTLLRAACRPGNFCLRL 437          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|546305305|ref|XP_005712599.1| (unnamed protein product [Chondrus crispus] >gi|507108926|emb|CDF32798.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 86.2705 bits (212), Expect = 1.235e-14
Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 0
Query:   26 KLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMY---ETGAAFSLNLLMDTV 145
            K +D E++ R LLW + MY+DG+C DY + Y   + PS   L+ +I++   +N   F +  P + T PL P  A  A++PR  +HL+P+ +  V+++ A   +++   +    F+L   +D +
Sbjct:  189 KFYDTERFFRALLWTLHMYIDGFCSDYTFQYAKPYGPSCDVLSKYIKD---HNGDPFVIQAPVANTSPLRPYQAAAAMLPRHAVHLLPKPVQQVVQNPALSKRLFLPKDEVNIFALVQAIDEI 308          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|470447366|ref|XP_004340059.1| (5'3' exoribonuclease, putative [Acanthamoeba castellanii str. Neff] >gi|440796943|gb|ELR18040.1| 5'3' exoribonuclease, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 77.411 bits (189), Expect = 1.932e-11
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   29 DEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHP 150
            D E YL+GL W ++MY++G+CPD ++ Y HR AP+A  L +F  +   +N S + ++VP S T PL P   CL V+P     L  E L   +   +++  ++          L+D V S  P
Sbjct:  683 DPEAYLQGLFWCLKMYMEGFCPDNKWFYTHRHAPTALQLRNFFADAGASN-SFYPVTVPRSATLPLPPHKFCLTVLPLQARELAHEMLQPYMALDSKLGSIFREPTLLVDVQLIDAVLSEIP 803          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|544212698|ref|XP_005536497.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017059|dbj|BAM80461.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 73.9442 bits (180), Expect = 2.072e-10
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0
Query:   24 EEKLFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNAS-SFALSVPTSLTPPLHPALACLAVMPRWGLHLVPE 114
            +EKL+D E++LR LLW + MY+DG+CPD+ + Y   + PSA   +D +R   +N+      L  P S+ PPL P  A LA++P     L+P+
Sbjct:  419 DEKLYDTEEWLRTLLWALAMYIDGFCPDFYHTYSRAYGPSA---SDIVRWLKENDGDPLLQLQPPLSVAPPLPPHAALLALVPASAARLLPQ 507          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|298715566|emb|CBJ28119.1| (5\'->3\' exoribonuclease, putative [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 1.573e-9
Identity = 30/79 (37.97%), Postives = 52/79 (65.82%), Query Frame = 0
Query:   27 LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMP 105
            LFD E +L G+LWN+QMY+DGY P + + Y  R++PS   +  +++  +++  ++  L+VP    PPL  ++ACL ++P
Sbjct:  472 LFDVESFLLGVLWNLQMYIDGYVPSFYWRYSPRYSPSCADIVSWVKLASEDKLAN--LAVPVVGAPPLPASIACLCMLP 548          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|551632483|ref|XP_005819111.1| (hypothetical protein GUITHDRAFT_121693 [Guillardia theta CCMP2712] >gi|428163037|gb|EKX32131.1| hypothetical protein GUITHDRAFT_121693 [Guillardia theta CCMP2712])

HSP 1 Score: 65.855 bits (159), Expect = 8.120e-8
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   31 EQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVL 120
            E+YL+G+LWN++MY+DG+ PD+++ Y  +  PS+  + ++I ++ K      +L   +S + PL PA  CLAV P      +P    ++L
Sbjct:  384 ERYLKGVLWNIKMYIDGFVPDFEFMYSFKKGPSSSSVVNWIESKVKP-----SLKAESSNSRPLAPAELCLAVTPVRAADRLPLQYRNIL 468          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|923122074|ref|XP_013754507.1| (hypothetical protein AMSG_08726 [Thecamonas trahens ATCC 50062] >gi|906559998|gb|KNC53241.1| hypothetical protein AMSG_08726 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 65.0846 bits (157), Expect = 1.242e-7
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 0
Query:   33 YLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRWGLHLVPENLSSVLESSARVNKMY 130
            Y  G+LW +Q Y  G  PDY +AY    AP+   LA+ +  Q +  A+   + VPTS TPPL PA   +A++P     ++P  L +++E+ + +  +Y
Sbjct:  549 YFSGVLWTLQTYRTGIVPDYGFAYTANRAPTVLSLANVLVTQPETLATY--VRVPTSATPPLAPAACLMALLPYAARDVLPGPLRALMEADSPLADLY 644          
BLAST of EWM20782.1 vs. NCBI_GenBank
Match: gi|1210526292|dbj|GAX15210.1| (5'-3' exoribonuclease 1 [Fistulifera solaris])

HSP 1 Score: 63.5438 bits (153), Expect = 4.719e-7
Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 0
Query:   33 YLRGLLWNVQMYVDGYCPDYQYAY-RHRFAPSAQCLADFIRNQTKNNASSFAL-SVPTSLTPPLHPALACLAVMPRWGLHLVPE---NLSSVLESSARVNKMYETGAAFSLNLLMDTVNSSHPHLVRSQN-FHWTEIKANT 167
            YL GLLW +Q Y DG C DY + Y   R APSA+ L ++   Q K    S  + S+    TPP+   +ACLA +P      + E    L      S   + + ET   F++ L     N        S + FH +E KA++
Sbjct:  510 YLYGLLWTLQTYQDGACADYGFQYGDRRLAPSAKDLVEYFE-QAKAAGRSIGISSLRNGYTPPVAAGIACLAALPLQAKEYIAEPYKYLDDEFVESTFQSCVNETSLTFNMKLFAHLCNDEVKKRALSDDRFHISEPKAHS 649          
The following BLAST results are available for this feature:
BLAST of EWM20782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585100668|gb|EWM20782.1|0.000e+0100.00exoribonuclease 2, partial [Nannochloropsis gadita... [more]
gi|546305305|ref|XP_005712599.1|1.235e-1430.89unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|470447366|ref|XP_004340059.1|1.932e-1134.435'3' exoribonuclease, putative [Acanthamoeba caste... [more]
gi|544212698|ref|XP_005536497.1|2.072e-1040.22hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|298715566|emb|CBJ28119.1|1.573e-937.975\'->3\' exoribonuclease, putative [Ectocarpus sil... [more]
gi|551632483|ref|XP_005819111.1|8.120e-834.44hypothetical protein GUITHDRAFT_121693 [Guillardia... [more]
gi|923122074|ref|XP_013754507.1|1.242e-734.69hypothetical protein AMSG_08726 [Thecamonas trahen... [more]
gi|1210526292|dbj|GAX15210.1|4.719e-732.625'-3' exoribonuclease 1 [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9917rna9917Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications