EWM20800.1, cds9873 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|585100696|gb|EWM20800.1| (dna polymerase zeta subunit [Nannochloropsis gaditana]) HSP 1 Score: 227.639 bits (579), Expect = 1.389e-75 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR 113 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR Sbjct: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR 113
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|643708591|gb|KDP23507.1| (hypothetical protein JCGZ_23340 [Jatropha curcas]) HSP 1 Score: 129.798 bits (325), Expect = 1.398e-32 Identity = 56/112 (50.00%), Postives = 86/112 (76.79%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ + LT WF+ G + R + + +V+Q ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE+++ R++ Y+A+SP Sbjct: 1065 MRGEVKLNMYNVEAVSEAVLRRKIPSIPYRVLTKWFLSGAGRARYRCIEYVIQRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMMLRLAHSQNYLAISP 1176
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|802756630|ref|XP_012089052.1| (DNA polymerase zeta catalytic subunit [Jatropha curcas]) HSP 1 Score: 129.413 bits (324), Expect = 1.839e-32 Identity = 56/112 (50.00%), Postives = 86/112 (76.79%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ + LT WF+ G + R + + +V+Q ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE+++ R++ Y+A+SP Sbjct: 1360 MRGEVKLNMYNVEAVSEAVLRRKIPSIPYRVLTKWFLSGAGRARYRCIEYVIQRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMMLRLAHSQNYLAISP 1471
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|641837345|gb|KDO56300.1| (hypothetical protein CISIN_1g000501mg [Citrus sinensis] >gi|641837346|gb|KDO56301.1| hypothetical protein CISIN_1g000501mg [Citrus sinensis]) HSP 1 Score: 127.872 bits (320), Expect = 5.050e-32 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ F LT WF G + R + + +V+ ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 1142 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1253
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|568835990|ref|XP_006472033.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X3 [Citrus sinensis]) HSP 1 Score: 127.872 bits (320), Expect = 6.147e-32 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ F LT WF G + R + + +V+ ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 890 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1001
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|971506630|dbj|GAQ91576.1| (DNA polymerase zeta [Klebsormidium nitens]) HSP 1 Score: 127.872 bits (320), Expect = 6.824e-32 Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL +YS +V VL R+ P+ + L+ WF +G A GR + +RHV++ +RLN ++LD+LD + RTSE+ARVFGIDFFSVLNRGSQYRVE++L R+++ Y+A+SP Sbjct: 2343 MRGEIKLHIYSLEAVADAVLRRKVPSFPWRTLSGWFARGVAGGRWRCVRHVVERARLNFDILDQLDFVNRTSELARVFGIDFFSVLNRGSQYRVESMLLRLARSQNYLAISP 2454
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|1201315451|gb|OVA15023.1| (DNA-directed DNA polymerase [Macleaya cordata]) HSP 1 Score: 127.487 bits (319), Expect = 7.166e-32 Identity = 59/112 (52.68%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 M+GE+KL+MY+ SV VL R+ P+ LT WF G +GR + + +VL+ +RLNLE++++ DL+ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 1339 MQGEIKLNMYTFESVAEAVLRRKIPSIPSRILTQWFSSGPGRGRFRCIEYVLERARLNLEIINKHDLINRTSELARVFGIDFFSVLSRGSQYRVESMLMRLAHTQNYLAISP 1450
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|985440168|ref|XP_015384032.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Citrus sinensis]) HSP 1 Score: 127.487 bits (319), Expect = 7.283e-32 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ F LT WF G + R + + +V+ ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 1125 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1236
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|567881561|ref|XP_006433339.1| (hypothetical protein CICLE_v10003639mg [Citrus clementina] >gi|557535461|gb|ESR46579.1| hypothetical protein CICLE_v10003639mg [Citrus clementina]) HSP 1 Score: 127.487 bits (319), Expect = 7.418e-32 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ F LT WF G + R + + +V+ ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 1065 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1176
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|568835988|ref|XP_006472032.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Citrus sinensis]) HSP 1 Score: 127.487 bits (319), Expect = 7.499e-32 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112 MRGE+KL+MY+ +V VL R+ P+ F LT WF G + R + + +V+ ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++ Y+A+SP Sbjct: 1132 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1243 The following BLAST results are available for this feature:
BLAST of EWM20800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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