EWM20800.1, cds9873 (CDS) Nannochloropsis gaditana

Overview
NameEWM20800.1
Unique Namecds9873
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:96162..96299 -
Alignment locationKK037257.1:95814..95953 -
Alignment locationKK037257.1:95601..95664 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20800.1
Productdna polymerase zeta subunit
Orig transcript idgnl|cribi|Naga_102284g1.10681.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:96162..96299 -
KK037257.1supercontigKK037257.1:95814..95953 -
KK037257.1supercontigKK037257.1:95601..95664 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009416response to light stimulus
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0019985translesion synthesis
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004518nuclease activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016035zeta DNA polymerase complex
Vocabulary: INTERPRO
TermDefinition
IPR030559PolZ_Rev3
IPR012337RNaseH-like_dom
Homology
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|585100696|gb|EWM20800.1| (dna polymerase zeta subunit [Nannochloropsis gaditana])

HSP 1 Score: 227.639 bits (579), Expect = 1.389e-75
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR 113
            MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR
Sbjct:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSPR 113          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|643708591|gb|KDP23507.1| (hypothetical protein JCGZ_23340 [Jatropha curcas])

HSP 1 Score: 129.798 bits (325), Expect = 1.398e-32
Identity = 56/112 (50.00%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  +  LT WF+ G  + R + + +V+Q ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE+++ R++    Y+A+SP
Sbjct: 1065 MRGEVKLNMYNVEAVSEAVLRRKIPSIPYRVLTKWFLSGAGRARYRCIEYVIQRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMMLRLAHSQNYLAISP 1176          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|802756630|ref|XP_012089052.1| (DNA polymerase zeta catalytic subunit [Jatropha curcas])

HSP 1 Score: 129.413 bits (324), Expect = 1.839e-32
Identity = 56/112 (50.00%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  +  LT WF+ G  + R + + +V+Q ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE+++ R++    Y+A+SP
Sbjct: 1360 MRGEVKLNMYNVEAVSEAVLRRKIPSIPYRVLTKWFLSGAGRARYRCIEYVIQRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMMLRLAHSQNYLAISP 1471          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|641837345|gb|KDO56300.1| (hypothetical protein CISIN_1g000501mg [Citrus sinensis] >gi|641837346|gb|KDO56301.1| hypothetical protein CISIN_1g000501mg [Citrus sinensis])

HSP 1 Score: 127.872 bits (320), Expect = 5.050e-32
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  F  LT WF  G  + R + + +V+  ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct: 1142 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1253          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|568835990|ref|XP_006472033.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X3 [Citrus sinensis])

HSP 1 Score: 127.872 bits (320), Expect = 6.147e-32
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  F  LT WF  G  + R + + +V+  ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct:  890 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1001          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|971506630|dbj|GAQ91576.1| (DNA polymerase zeta [Klebsormidium nitens])

HSP 1 Score: 127.872 bits (320), Expect = 6.824e-32
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL +YS  +V   VL R+ P+  +  L+ WF +G A GR + +RHV++ +RLN ++LD+LD + RTSE+ARVFGIDFFSVLNRGSQYRVE++L R+++   Y+A+SP
Sbjct: 2343 MRGEIKLHIYSLEAVADAVLRRKVPSFPWRTLSGWFARGVAGGRWRCVRHVVERARLNFDILDQLDFVNRTSELARVFGIDFFSVLNRGSQYRVESMLLRLARSQNYLAISP 2454          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|1201315451|gb|OVA15023.1| (DNA-directed DNA polymerase [Macleaya cordata])

HSP 1 Score: 127.487 bits (319), Expect = 7.166e-32
Identity = 59/112 (52.68%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            M+GE+KL+MY+  SV   VL R+ P+     LT WF  G  +GR + + +VL+ +RLNLE++++ DL+ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct: 1339 MQGEIKLNMYTFESVAEAVLRRKIPSIPSRILTQWFSSGPGRGRFRCIEYVLERARLNLEIINKHDLINRTSELARVFGIDFFSVLSRGSQYRVESMLMRLAHTQNYLAISP 1450          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|985440168|ref|XP_015384032.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Citrus sinensis])

HSP 1 Score: 127.487 bits (319), Expect = 7.283e-32
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  F  LT WF  G  + R + + +V+  ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct: 1125 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1236          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|567881561|ref|XP_006433339.1| (hypothetical protein CICLE_v10003639mg [Citrus clementina] >gi|557535461|gb|ESR46579.1| hypothetical protein CICLE_v10003639mg [Citrus clementina])

HSP 1 Score: 127.487 bits (319), Expect = 7.418e-32
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  F  LT WF  G  + R + + +V+  ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct: 1065 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1176          
BLAST of EWM20800.1 vs. NCBI_GenBank
Match: gi|568835988|ref|XP_006472032.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Citrus sinensis])

HSP 1 Score: 127.487 bits (319), Expect = 7.499e-32
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    1 MRGELKLSMYSQASVVAHVLNRRHPAPSFSALTAWFVQGGAKGRAQALRHVLQTSRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVSKPLGYVALSP 112
            MRGE+KL+MY+  +V   VL R+ P+  F  LT WF  G  + R + + +V+  ++LNLE++++LD++ RTSE+ARVFGIDFFSVL+RGSQYRVE++L R++    Y+A+SP
Sbjct: 1132 MRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1243          
The following BLAST results are available for this feature:
BLAST of EWM20800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100696|gb|EWM20800.1|1.389e-75100.00dna polymerase zeta subunit [Nannochloropsis gadit... [more]
gi|643708591|gb|KDP23507.1|1.398e-3250.00hypothetical protein JCGZ_23340 [Jatropha curcas][more]
gi|802756630|ref|XP_012089052.1|1.839e-3250.00DNA polymerase zeta catalytic subunit [Jatropha cu... [more]
gi|641837345|gb|KDO56300.1|5.050e-3250.89hypothetical protein CISIN_1g000501mg [Citrus sine... [more]
gi|568835990|ref|XP_006472033.1|6.147e-3250.89PREDICTED: DNA polymerase zeta catalytic subunit i... [more]
gi|971506630|dbj|GAQ91576.1|6.824e-3254.46DNA polymerase zeta [Klebsormidium nitens][more]
gi|1201315451|gb|OVA15023.1|7.166e-3252.68DNA-directed DNA polymerase [Macleaya cordata][more]
gi|985440168|ref|XP_015384032.1|7.283e-3250.89PREDICTED: DNA polymerase zeta catalytic subunit i... [more]
gi|567881561|ref|XP_006433339.1|7.418e-3250.89hypothetical protein CICLE_v10003639mg [Citrus cle... [more]
gi|568835988|ref|XP_006472032.1|7.499e-3250.89PREDICTED: DNA polymerase zeta catalytic subunit i... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9904rna9904Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications