EWM20833.1, cds9840 (CDS) Nannochloropsis gaditana

Overview
NameEWM20833.1
Unique Namecds9840
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:18819..19139 +
Alignment locationKK037257.1:19437..19475 +
Alignment locationKK037257.1:19740..19794 +
Alignment locationKK037257.1:20143..20348 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20833.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100524g2.10024.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:18819..19139 +
KK037257.1supercontigKK037257.1:19437..19475 +
KK037257.1supercontigKK037257.1:19740..19794 +
KK037257.1supercontigKK037257.1:20143..20348 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20833.1 vs. NCBI_GenBank
Match: gi|585100758|gb|EWM20833.1| (hypothetical protein Naga_100524g2 [Nannochloropsis gaditana])

HSP 1 Score: 419.468 bits (1077), Expect = 1.824e-148
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MPNIRCLLTVVIYVYLTTLAASAFLPSHTITSPSVASFAEVSSKCGRLSTKLEASQRETNFGATRRRILTGYFSKGLVSAAALQVLSFPSPTIAATNKTAIAAYVSQIESGYKELKTMYKEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVSGGVEARKRKRGVQRGWAACKRLNTQFSFIMGGGAS 206
            MPNIRCLLTVVIYVYLTTLAASAFLPSHTITSPSVASFAEVSSKCGRLSTKLEASQRETNFGATRRRILTGYFSKGLVSAAALQVLSFPSPTIAATNKTAIAAYVSQIESGYKELKTMYKEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVSGGVEARKRKRGVQRGWAACKRLNTQFSFIMGGGAS
Sbjct:    1 MPNIRCLLTVVIYVYLTTLAASAFLPSHTITSPSVASFAEVSSKCGRLSTKLEASQRETNFGATRRRILTGYFSKGLVSAAALQVLSFPSPTIAATNKTAIAAYVSQIESGYKELKTMYKEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVSGGVEARKRKRGVQRGWAACKRLNTQFSFIMGGGAS 206          
BLAST of EWM20833.1 vs. NCBI_GenBank
Match: gi|553186227|ref|XP_005854382.1| (hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526] >gi|422294676|gb|EKU21976.1| hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.301 bits (264), Expect = 5.584e-26
Identity = 60/89 (67.42%), Postives = 63/89 (70.79%), Query Frame = 0
Query:  120 KEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVSGGVEARKRKRGVQRGWAACKRL---NTQFSFIMGGGA 205
             EEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDV   ++     + V  G      L   N   SF  GGGA
Sbjct:   13 HEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVGDVLDFVDASQRVLDGIKNADFLAYSNNFASFGNGGGA 101          
BLAST of EWM20833.1 vs. NCBI_GenBank
Match: gi|873218604|emb|CEM39206.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.8626 bits (172), Expect = 2.215e-11
Identity = 59/164 (35.98%), Postives = 84/164 (51.22%), Query Frame = 0
Query:   21 ASAFLPSHTITSPSV--------ASFAEVSSKCGRLSTKLEASQRETNFGATRRRILTGYFSKGLVSAAALQVLSFPSPTIAATNKTAIAA----------YVSQIESGYKELKTMYKEEWASTKAKG-GDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGD 165
            A AF PSH  +SP V        A   ++SS   RLS  +     +       RR        GL +A  L +LS   P +A T ++A+A           Y+++I++GY  LK +  ++W +  AKG GD VRR LG VGT SPLF+I++A + V  AL +GD
Sbjct:   18 AMAFHPSHMPSSPGVSISPGQHPARRPQLSSTT-RLSALIRRRDDDQAEAVLDRRSALVTAQVGL-AALVLPLLSIGGPALAVT-RSALAGDVPRGAPALEYIARIQNGYLALKELL-DKWGTVAAKGDGDAVRRYLGTVGTYSPLFQINRAFEGVLQALSKGD 177          
The following BLAST results are available for this feature:
BLAST of EWM20833.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100758|gb|EWM20833.1|1.824e-148100.00hypothetical protein Naga_100524g2 [Nannochloropsi... [more]
gi|553186227|ref|XP_005854382.1|5.584e-2667.42hypothetical protein NGA_0207500 [Nannochloropsis ... [more]
gi|873218604|emb|CEM39206.1|2.215e-1135.98unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9871rna9871Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications