EWM29687.1, cds983 (CDS) Nannochloropsis gaditana

Overview
NameEWM29687.1
Unique Namecds983
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:901373..902026 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29687.1
Productn-carbamoylsarcosine amidase
Orig transcript idgnl|cribi|Naga_100114g8.2472.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:901373..902026 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000868Isochorismatase-like
Homology
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|585112263|gb|EWM29687.1| (n-carbamoylsarcosine amidase [Nannochloropsis gaditana])

HSP 1 Score: 448.358 bits (1152), Expect = 1.641e-159
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ 217
            MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ
Sbjct:    1 MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ 217          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|553194282|ref|XP_005855920.1| (isochorismatase hydrolase, partial [Nannochloropsis gaditana CCMP526] >gi|422293141|gb|EKU20441.1| isochorismatase hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 449.129 bits (1154), Expect = 2.834e-159
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ 217
            MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ
Sbjct:   33 MAAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKNREQ 249          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|930018670|ref|WP_054122960.1| (isochorismatase [Novosphingobium sp. AAP93] >gi|929698349|gb|KPF80613.1| isochorismatase [Novosphingobium sp. AAP93])

HSP 1 Score: 248.44 bits (633), Expect = 1.556e-80
Identity = 119/203 (58.62%), Postives = 151/203 (74.38%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIK 213
            G +A N  G FDG+L  G RP +++ID V+AYL+  SPLYAG+E A+ S  RL+A+AR+   PV  T VE+ PGG DGG+FFRK+P LK+FEKGSP+G F P + P   + ++TK+YASAFF T LA TL + GVDT+LI G+STSGCVRATA DACQ GF+P VV DA GDRH   HE+NLFD++AKYAEV  EE A  +++
Sbjct:    6 GEIAANYTGAFDGSLPFGKRPAIIVIDMVEAYLQPGSPLYAGIEAAVESAARLVAVARQCGAPVFFTNVEYQPGGADGGVFFRKVPALKVFEKGSPLGAFPPQLSPEDGDFVITKRYASAFFATHLAATLTSLGVDTLLITGVSTSGCVRATALDACQSGFLPFVVRDACGDRHPGPHEANLFDLQAKYAEVVSEERAITHLQ 208          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|1119408701|ref|WP_072384318.1| (isochorismatase [Novosphingobium sp. NDB2Meth1])

HSP 1 Score: 248.44 bits (633), Expect = 2.000e-80
Identity = 119/203 (58.62%), Postives = 151/203 (74.38%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIK 213
            G +A N  G FDG+L  G RP +++ID V+AYL+  SPLYAG+E A+ S  RL+A+AR+   PV  T VE+ PGG DGG+FFRK+P LK+FEKGSP+G F P + P   + ++TK+YASAFF T LA TL + GVDT+LI G+STSGCVRATA DACQ GF+P VV DA GDRH   HE+NLFD++AKYAEV  EE A  +++
Sbjct:    6 GEIAANYTGAFDGSLPFGKRPAIIVIDMVEAYLQPGSPLYAGIEAAVESAARLVAVARQCGAPVFFTNVEYQPGGADGGVFFRKVPALKVFEKGSPLGAFPPQLSPEDGDFVITKRYASAFFATHLAATLTSIGVDTLLITGVSTSGCVRATALDACQSGFLPFVVRDACGDRHPGPHEANLFDLQAKYAEVVSEERAITHLQ 208          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|820803549|ref|WP_046764805.1| (isochorismatase [Sphingobium chungbukense] >gi|820039792|gb|KKW91290.1| isochorismatase [Sphingobium chungbukense])

HSP 1 Score: 247.284 bits (630), Expect = 4.675e-80
Identity = 124/196 (63.27%), Postives = 146/196 (74.49%), Query Frame = 0
Query:   13 LADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAA 208
            LA N  G FDG+L+PG R  LLIID V+AYL   S LYA  EDALAS +RLLA AR   +PV+ T VE+  GG+DGG FFRK+P LK F KGSP+G F   + P  +E++VTKQYASAFFGTSLA TL + GVDT+LI G STSGCVRA+A DA QHGFIP V+ DA  DRH   HE+NLFD++AKYAEV  E+AA
Sbjct:    5 LAANYAGAFDGSLRPGRRIALLIIDVVRAYLDPASSLYARAEDALASNQRLLAAARTAEVPVIFTNVEYQAGGMDGGRFFRKVPALKAFVKGSPLGAFPETLQPRSDEIVVTKQYASAFFGTSLAATLTSLGVDTLLITGFSTSGCVRASAVDALQHGFIPFVIRDACADRHPGPHEANLFDLQAKYAEVVGEQAA 200          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|550930118|ref|WP_022678580.1| (MULTISPECIES: isochorismatase [Novosphingobium] >gi|929671731|gb|KPF54612.1| isochorismatase [Novosphingobium sp. AAP1])

HSP 1 Score: 246.514 bits (628), Expect = 7.661e-80
Identity = 120/192 (62.50%), Postives = 143/192 (74.48%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEV 202
            G L  N  G FDG L  G RP LL++D V+AYL+  SPLYAG+E ALAS  R+ A AR   LPV+ T VE+ PGG DGG+F+RK+P LK+FEKGSP+G F   + P   +V++TK+YASAFF T LA TL A GVDTVLI G STSGC+RATA DACQHGF+P VV DA GDRH   HE+NLFD++AKYAEV
Sbjct:    6 GDLDANYAGAFDGRLPFGQRPGLLLVDLVEAYLQPGSPLYAGIEAALASAVRITAAARAAGLPVIFTNVEYQPGGADGGVFYRKVPALKVFEKGSPLGAFPAVLSPQAGDVVITKRYASAFFATHLAATLTAMGVDTVLICGTSTSGCIRATALDACQHGFVPFVVADACGDRHPAPHEANLFDLQAKYAEV 197          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|661300606|ref|WP_029993360.1| (isochorismatase [Sphingomonas sp. YL-JM2C])

HSP 1 Score: 244.973 bits (624), Expect = 3.352e-79
Identity = 119/204 (58.33%), Postives = 149/204 (73.04%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKN 214
            G L DN RG FDG L  G+ P LLI+D  +AY++  SPLY G +DAL S +RL+A AR   +PVV TRV + PGG DGG+F+RK+P L+ F++G P+G+F   + PLP E++VTKQYAS+FFGTSLA +LRA G+DT+LI G STSGCVRATA DA Q+ F P VV DA GDRH   HE+NLFD++AKYAEV  E  A   I +
Sbjct:    3 GDLTDNYRGAFDGRLPFGSAPALLIVDVARAYVEPGSPLYVGNDDALRSNERLIAAARAAGVPVVFTRVVYQPGGADGGLFYRKVPALRCFQEGEPLGDFPASIQPLPGELVVTKQYASSFFGTSLASSLRANGIDTLLITGYSTSGCVRATALDALQNSFSPFVVRDACGDRHPSPHEANLFDLQAKYAEVIGEPEALQLIAS 206          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|662139330|ref|WP_030090738.1| (isochorismatase [Sphingomonas sp. DC-6] >gi|1193152112|gb|ARR55146.1| isochorismatase [Sphingomonas sp. DC-6])

HSP 1 Score: 244.588 bits (623), Expect = 6.049e-79
Identity = 118/204 (57.84%), Postives = 149/204 (73.04%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIKN 214
            G L DN RG FDG L  G+ P LL++D  +AY++  SPLY G +DAL S +RL+A AR   +PVV TRV + PGG DGG+F+RK+P L+ F++G P+G+F   + PLP E++VTKQYAS+FFGTSLA +LRA G+DT+LI G STSGCVRATA DA Q+ F P VV DA GDRH   HE+NLFD++AKYAEV  E  A   I +
Sbjct:    3 GDLTDNYRGAFDGRLPFGSAPALLVVDVARAYVEPGSPLYVGNDDALRSNERLIAAARAAGVPVVFTRVVYQPGGADGGLFYRKVPALRCFQEGEPLGDFPASIQPLPGELVVTKQYASSFFGTSLASSLRANGIDTLLITGYSTSGCVRATALDALQNSFSPFVVRDACGDRHPSPHEANLFDLQAKYAEVIGEPEALQLIAS 206          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|1011978488|ref|WP_062783930.1| (isochorismatase [Novosphingobium capsulatum])

HSP 1 Score: 243.047 bits (619), Expect = 2.319e-78
Identity = 119/195 (61.03%), Postives = 142/195 (72.82%), Query Frame = 0
Query:   11 GSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDE 205
            G L  N  G FDG L  G RP LL++D V+AYL+  SPLYAG+E AL S  R+ A AR   LPV+ T VE+ PGG DGG+F+RK+P LK FEKGSP+G F   + P   +V++TK+YASAFF T LA TL A GVDTVLI G STSGC+RATA DACQHGF+P VV DA GDRH   H++NLFD++AKYAEV  E
Sbjct:    6 GDLDANYAGAFDGRLPFGQRPGLLLVDLVEAYLQPGSPLYAGIESALESAVRITAAARAAGLPVIFTNVEYQPGGADGGVFYRKVPALKAFEKGSPLGAFPAVLAPQDGDVVITKRYASAFFATHLAATLTAMGVDTVLICGTSTSGCIRATALDACQHGFLPFVVADACGDRHPAPHQANLFDLQAKYAEVVSE 200          
BLAST of EWM29687.1 vs. NCBI_GenBank
Match: gi|499763102|ref|WP_011443836.1| (isochorismatase [Novosphingobium aromaticivorans] >gi|87133880|gb|ABD24622.1| isochorismatase hydrolase [Novosphingobium aromaticivorans DSM 12444] >gi|1081516999|emb|SCY22571.1| Nicotinamidase-related amidase [Novosphingobium stygium])

HSP 1 Score: 242.662 bits (618), Expect = 2.884e-78
Identity = 117/206 (56.80%), Postives = 147/206 (71.36%), Query Frame = 0
Query:    8 NKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIK 213
              E  LA N  G FDG L  G  P L+++D V+AYL+  SPLYAG+E AL S  RL   AR   +PV+ T VE+ PGG DGG+F+RK+P L++FEKGSP+G F   + P  +E+++TK+YASAFF T LA TL + GVDTVLI G STSGC+RATA DACQHGF+P VV DA GDRH   HE+NLFD++AKYAEV  E  A  +++
Sbjct:    3 QHEDDLAANYAGAFDGRLPFGQCPALVVVDLVEAYLQPGSPLYAGIEAALESAVRLTDAARNAGIPVIFTNVEYQPGGTDGGVFYRKVPALRVFEKGSPLGAFPAVLSPREDEIVITKRYASAFFATHLASTLTSLGVDTVLICGTSTSGCIRATALDACQHGFLPFVVRDACGDRHQAPHEANLFDLQAKYAEVIGEAEALAFLR 208          
The following BLAST results are available for this feature:
BLAST of EWM29687.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112263|gb|EWM29687.1|1.641e-159100.00n-carbamoylsarcosine amidase [Nannochloropsis gadi... [more]
gi|553194282|ref|XP_005855920.1|2.834e-159100.00isochorismatase hydrolase, partial [Nannochloropsi... [more]
gi|930018670|ref|WP_054122960.1|1.556e-8058.62isochorismatase [Novosphingobium sp. AAP93] >gi|92... [more]
gi|1119408701|ref|WP_072384318.1|2.000e-8058.62isochorismatase [Novosphingobium sp. NDB2Meth1][more]
gi|820803549|ref|WP_046764805.1|4.675e-8063.27isochorismatase [Sphingobium chungbukense] >gi|820... [more]
gi|550930118|ref|WP_022678580.1|7.661e-8062.50MULTISPECIES: isochorismatase [Novosphingobium] >g... [more]
gi|661300606|ref|WP_029993360.1|3.352e-7958.33isochorismatase [Sphingomonas sp. YL-JM2C][more]
gi|662139330|ref|WP_030090738.1|6.049e-7957.84isochorismatase [Sphingomonas sp. DC-6] >gi|119315... [more]
gi|1011978488|ref|WP_062783930.1|2.319e-7861.03isochorismatase [Novosphingobium capsulatum][more]
gi|499763102|ref|WP_011443836.1|2.884e-7856.80isochorismatase [Novosphingobium aromaticivorans] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna984rna984Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications