EWM20852.1, cds9823 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|585100790|gb|EWM20852.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 437.958 bits (1125), Expect = 1.824e-155 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 Query: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL Sbjct: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|585100791|gb|EWM20853.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 305.834 bits (782), Expect = 7.427e-104 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 Query: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ Sbjct: 1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|298710624|emb|CBJ32052.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 152.525 bits (384), Expect = 1.924e-43 Identity = 72/124 (58.06%), Postives = 91/124 (73.39%), Query Frame = 0 Query: 92 RDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 R +SL GPFK+VL VNM+L MGKGK+ AQC HATLG Y+ + R P L+GWE+MGQAKIC+K P + EL ++ A L++Y V DAG TQIAAGS+TVLA+GPAPV + I+ HLKL+ Sbjct: 39 RAWSLDDGPFKLVLIVNMQLKMGKGKVVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKLM 162
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|953497785|emb|CEG40545.1| (peptidyl-trna hydrolase [Plasmopara halstedii]) HSP 1 Score: 146.747 bits (369), Expect = 8.430e-41 Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGKIAAQC HATLGAYK A + P ++GWE +GQAK+CLKV + EL L ++ L+SY V DAGRTQIA S+TVL+IGPAP++ ID +TGHLKL+ Sbjct: 75 PHKMVMCVRTDLKMGKGKIAAQCCHATLGAYKLALKRTPDAVRGWEMLGQAKVCLKVESEEELLALADKASECGLVSYVVVDAGRTQIAPDSKTVLSIGPAPLKVIDEVTGHLKLM 190
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|675176707|ref|XP_008897238.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >gi|568103033|gb|ETN17704.1| peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >gi|970654657|gb|KUF92938.1| Mitogen-activated protein kinase kinase 1 [Phytophthora nicotianae] >gi|970665720|gb|KUG02300.1| peptidyl-tRNA hydrolase 2 [Phytophthora nicotianae]) HSP 1 Score: 145.976 bits (367), Expect = 1.320e-40 Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P ++ WE +GQAK+CLKV + E+ L + L++Y V DAGRTQIA S+TVL+IGPAP++EID ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKEIDEITGHLKLM 192
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|301119723|ref|XP_002907589.1| (peptidyl-tRNA hydrolase, putative [Phytophthora infestans T30-4] >gi|262106101|gb|EEY64153.1| peptidyl-tRNA hydrolase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 144.821 bits (364), Expect = 4.163e-40 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P ++ WE +GQAK+CLKV + E+ L + L++Y V DAGRTQIA S+TVL+IGPAP++ ID ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|568006860|gb|ETL81108.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|570314946|gb|ETO62894.1| peptidyl-tRNA hydrolase [Phytophthora parasitica P1976] >gi|570938702|gb|ETP03959.1| peptidyl-tRNA hydrolase [Phytophthora parasitica CJ01A1] >gi|570968995|gb|ETP32114.1| peptidyl-tRNA hydrolase [Phytophthora parasitica P10297]) HSP 1 Score: 143.665 bits (361), Expect = 1.165e-39 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P ++ WE +GQAK+CLKV + E+ L + L++Y V DAGRTQIA S+TVL+IGPAP++ ID ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|695381904|ref|XP_009517234.1| (hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae] >gi|348690145|gb|EGZ29959.1| hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae]) HSP 1 Score: 143.665 bits (361), Expect = 1.265e-39 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGKIAAQC HATLGAYKRA + P ++ WE +GQAK+CLKV + E+ L + L++Y V DAGRTQIA S+TVL+IGPAP++ ID +TGHLKL+ Sbjct: 75 PHKMVMCVRTDLKMGKGKIAAQCCHATLGAYKRAVKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAERAAEHGLVNYVVVDAGRTQIAPDSKTVLSIGPAPLKAIDEVTGHLKLM 190
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|566011178|gb|ETI34089.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica P1569] >gi|567948694|gb|ETK74435.1| peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|567977352|gb|ETL27856.1| peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|568036695|gb|ETM34297.1| peptidyl-tRNA hydrolase [Phytophthora parasitica]) HSP 1 Score: 143.665 bits (361), Expect = 1.284e-39 Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P ++ WE +GQAK+CLKV + E+ L + L++Y V DAGRTQIA S+TVL+IGPAP++ ID ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|325189572|emb|CCA24058.1| (peptidyltRNA hydrolase putative [Albugo laibachii Nc14]) HSP 1 Score: 143.28 bits (360), Expect = 2.149e-39 Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 0 Query: 100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215 P KMVLCV +L MGKGKIAAQC HATLGAYK A R P+ + WE +GQAK+CLK+ + EL +L QL Y V DAGRTQIA ++TVL IGPAPV EID +T HLKLL Sbjct: 90 PQKMVLCVRTDLGMGKGKIAAQCCHATLGAYKLALRKTPKIVDTWEAIGQAKVCLKIGSEQELIQLAETANALQLNHYIVVDAGRTQIAPDTKTVLGIGPAPVDEIDDVTRHLKLL 205 The following BLAST results are available for this feature:
BLAST of EWM20852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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