EWM20852.1, cds9823 (CDS) Nannochloropsis gaditana

Overview
NameEWM20852.1
Unique Namecds9823
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:269295..269737 -
Alignment locationKK037256.1:268777..268981 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20852.1
Productpeptidyl-trna hydrolase pth2 domain-containing protein
Orig transcript idgnl|cribi|Naga_100514g3.5676.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:269295..269737 -
KK037256.1supercontigKK037256.1:268777..268981 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004045aminoacyl-tRNA hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023476Pep_tRNA_hydro_II_dom
IPR002833PTH2
Homology
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|585100790|gb|EWM20852.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 437.958 bits (1125), Expect = 1.824e-155
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL
Sbjct:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|585100791|gb|EWM20853.1| (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 305.834 bits (782), Expect = 7.427e-104
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149
            MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ
Sbjct:    1 MALEACSGILSSASTAFREASSTTPGWIVFLSFGAGALVSSFLPSMRKTGRRKRGRQWPSEALEEEADEGSDSERSDTEESADGITSAKTIRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQ 149          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|298710624|emb|CBJ32052.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.525 bits (384), Expect = 1.924e-43
Identity = 72/124 (58.06%), Postives = 91/124 (73.39%), Query Frame = 0
Query:   92 RDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            R +SL  GPFK+VL VNM+L MGKGK+ AQC HATLG Y+ + R  P  L+GWE+MGQAKIC+K P + EL  ++     A L++Y V DAG TQIAAGS+TVLA+GPAPV   + I+ HLKL+
Sbjct:   39 RAWSLDDGPFKLVLIVNMQLKMGKGKVVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKLM 162          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|953497785|emb|CEG40545.1| (peptidyl-trna hydrolase [Plasmopara halstedii])

HSP 1 Score: 146.747 bits (369), Expect = 8.430e-41
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGKIAAQC HATLGAYK A +  P  ++GWE +GQAK+CLKV  + EL  L    ++  L+SY V DAGRTQIA  S+TVL+IGPAP++ ID +TGHLKL+
Sbjct:   75 PHKMVMCVRTDLKMGKGKIAAQCCHATLGAYKLALKRTPDAVRGWEMLGQAKVCLKVESEEELLALADKASECGLVSYVVVDAGRTQIAPDSKTVLSIGPAPLKVIDEVTGHLKLM 190          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|675176707|ref|XP_008897238.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >gi|568103033|gb|ETN17704.1| peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >gi|970654657|gb|KUF92938.1| Mitogen-activated protein kinase kinase 1 [Phytophthora nicotianae] >gi|970665720|gb|KUG02300.1| peptidyl-tRNA hydrolase 2 [Phytophthora nicotianae])

HSP 1 Score: 145.976 bits (367), Expect = 1.320e-40
Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGK+AAQC HATLGAYKRA +  P  ++ WE +GQAK+CLKV  + E+  L     +  L++Y V DAGRTQIA  S+TVL+IGPAP++EID ITGHLKL+
Sbjct:   77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKEIDEITGHLKLM 192          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|301119723|ref|XP_002907589.1| (peptidyl-tRNA hydrolase, putative [Phytophthora infestans T30-4] >gi|262106101|gb|EEY64153.1| peptidyl-tRNA hydrolase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-40
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGK+AAQC HATLGAYKRA +  P  ++ WE +GQAK+CLKV  + E+  L     +  L++Y V DAGRTQIA  S+TVL+IGPAP++ ID ITGHLKL+
Sbjct:   77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|568006860|gb|ETL81108.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|570314946|gb|ETO62894.1| peptidyl-tRNA hydrolase [Phytophthora parasitica P1976] >gi|570938702|gb|ETP03959.1| peptidyl-tRNA hydrolase [Phytophthora parasitica CJ01A1] >gi|570968995|gb|ETP32114.1| peptidyl-tRNA hydrolase [Phytophthora parasitica P10297])

HSP 1 Score: 143.665 bits (361), Expect = 1.165e-39
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGK+AAQC HATLGAYKRA +  P  ++ WE +GQAK+CLKV  + E+  L     +  L++Y V DAGRTQIA  S+TVL+IGPAP++ ID ITGHLKL+
Sbjct:   77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|695381904|ref|XP_009517234.1| (hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae] >gi|348690145|gb|EGZ29959.1| hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae])

HSP 1 Score: 143.665 bits (361), Expect = 1.265e-39
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGKIAAQC HATLGAYKRA +  P  ++ WE +GQAK+CLKV  + E+  L     +  L++Y V DAGRTQIA  S+TVL+IGPAP++ ID +TGHLKL+
Sbjct:   75 PHKMVMCVRTDLKMGKGKIAAQCCHATLGAYKRAVKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAERAAEHGLVNYVVVDAGRTQIAPDSKTVLSIGPAPLKAIDEVTGHLKLM 190          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|566011178|gb|ETI34089.1| (peptidyl-tRNA hydrolase [Phytophthora parasitica P1569] >gi|567948694|gb|ETK74435.1| peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|567977352|gb|ETL27856.1| peptidyl-tRNA hydrolase [Phytophthora parasitica] >gi|568036695|gb|ETM34297.1| peptidyl-tRNA hydrolase [Phytophthora parasitica])

HSP 1 Score: 143.665 bits (361), Expect = 1.284e-39
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMV+CV  +L MGKGK+AAQC HATLGAYKRA +  P  ++ WE +GQAK+CLKV  + E+  L     +  L++Y V DAGRTQIA  S+TVL+IGPAP++ ID ITGHLKL+
Sbjct:   77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192          
BLAST of EWM20852.1 vs. NCBI_GenBank
Match: gi|325189572|emb|CCA24058.1| (peptidyltRNA hydrolase putative [Albugo laibachii Nc14])

HSP 1 Score: 143.28 bits (360), Expect = 2.149e-39
Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 0
Query:  100 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
            P KMVLCV  +L MGKGKIAAQC HATLGAYK A R  P+ +  WE +GQAK+CLK+  + EL +L       QL  Y V DAGRTQIA  ++TVL IGPAPV EID +T HLKLL
Sbjct:   90 PQKMVLCVRTDLGMGKGKIAAQCCHATLGAYKLALRKTPKIVDTWEAIGQAKVCLKIGSEQELIQLAETANALQLNHYIVVDAGRTQIAPDTKTVLGIGPAPVDEIDDVTRHLKLL 205          
The following BLAST results are available for this feature:
BLAST of EWM20852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100790|gb|EWM20852.1|1.824e-155100.00peptidyl-trna hydrolase pth2 domain-containing pro... [more]
gi|585100791|gb|EWM20853.1|7.427e-104100.00peptidyl-trna hydrolase pth2 domain-containing pro... [more]
gi|298710624|emb|CBJ32052.1|1.924e-4358.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|953497785|emb|CEG40545.1|8.430e-4160.34peptidyl-trna hydrolase [Plasmopara halstedii][more]
gi|675176707|ref|XP_008897238.1|1.320e-4059.48peptidyl-tRNA hydrolase [Phytophthora parasitica I... [more]
gi|301119723|ref|XP_002907589.1|4.163e-4058.62peptidyl-tRNA hydrolase, putative [Phytophthora in... [more]
gi|568006860|gb|ETL81108.1|1.165e-3958.62peptidyl-tRNA hydrolase [Phytophthora parasitica] ... [more]
gi|695381904|ref|XP_009517234.1|1.265e-3958.62hypothetical protein PHYSODRAFT_344137 [Phytophtho... [more]
gi|566011178|gb|ETI34089.1|1.284e-3958.62peptidyl-tRNA hydrolase [Phytophthora parasitica P... [more]
gi|325189572|emb|CCA24058.1|2.149e-3961.21peptidyltRNA hydrolase putative [Albugo laibachii ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9854rna9854Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications