EWM20850.1, cds9820 (CDS) Nannochloropsis gaditana

Overview
NameEWM20850.1
Unique Namecds9820
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:265970..266323 -
Alignment locationKK037256.1:265649..265816 -
Alignment locationKK037256.1:265232..265421 -
Alignment locationKK037256.1:265093..265142 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20850.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100514g1.5674.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:265970..266323 -
KK037256.1supercontigKK037256.1:265649..265816 -
KK037256.1supercontigKK037256.1:265232..265421 -
KK037256.1supercontigKK037256.1:265093..265142 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20850.1 vs. NCBI_GenBank
Match: gi|585100788|gb|EWM20850.1| (hypothetical protein Naga_100514g1 [Nannochloropsis gaditana])

HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 
Query:    1 MRPLPAPEWRSLSVFKGRSHGRRFEEEKRTRGRGPNPKKCKMKPPSPREKGLHPKQHLKGQQDEGYHCVCCRRRPHLALTSLPLASCVLLLLLPLLPLTWGYPSYLLNPDGCRSQKLEVGFDIMGSPVVEEKAMKESPIVVLRGDTALHSGSEYKSGETLSVKLEGRAGMYCMEVRGGAAMFSGGACDGTRVTEPDVLALPIGDKETLQTVTLHVGLASRYGPVTLLPPFVLHPPGKDSAAGKGERDGAFLDR 253
            MRPLPAPEWRSLSVFKGRSHGRRFEEEKRTRGRGPNPKKCKMKPPSPREKGLHPKQHLKGQQDEGYHCVCCRRRPHLALTSLPLASCVLLLLLPLLPLTWGYPSYLLNPDGCRSQKLEVGFDIMGSPVVEEKAMKESPIVVLRGDTALHSGSEYKSGETLSVKLEGRAGMYCMEVRGGAAMFSGGACDGTRVTEPDVLALPIGDKETLQTVTLHVGLASRYGPVTLLPPFVLHPPGKDSAAGKGERDGAFLDR
Sbjct:    1 MRPLPAPEWRSLSVFKGRSHGRRFEEEKRTRGRGPNPKKCKMKPPSPREKGLHPKQHLKGQQDEGYHCVCCRRRPHLALTSLPLASCVLLLLLPLLPLTWGYPSYLLNPDGCRSQKLEVGFDIMGSPVVEEKAMKESPIVVLRGDTALHSGSEYKSGETLSVKLEGRAGMYCMEVRGGAAMFSGGACDGTRVTEPDVLALPIGDKETLQTVTLHVGLASRYGPVTLLPPFVLHPPGKDSAAGKGERDGAFLDR 253
[Close]
BLAST of EWM20850.1 vs. NCBI_GenBank
Match: gi|585103338|gb|EWM22742.1| (hypothetical protein Naga_100949g1 [Nannochloropsis gaditana])

HSP 1 Score: 82.0333 bits (201), Expect = 1.620e-16
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:   87 CVLLLLLPLLPLTW-GYPSYLLNPDGCRSQKLEVGFDIMGSPVVEEKAMKESPIVVLRGDTALHSGSEYKSGETLSVKLEGRAG 169
            C L +L+ LL  +  GYP YLLNP+GC  +KLEVGF +M  P + +K +K +P+ V R   AL +GSEY+SGE L+V++EGRAG
Sbjct:    9 CHLPVLIFLLSASVRGYPHYLLNPEGCVDKKLEVGFKMMAYPAILDK-VKGTPVKVYRRGQALTNGSEYRSGEVLTVRVEGRAG 91
The following BLAST results are available for this feature:
BLAST of EWM20850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100788|gb|EWM20850.1|0.000e+0100.00hypothetical protein Naga_100514g1 [Nannochloropsi... [more]
gi|585103338|gb|EWM22742.1|1.620e-1652.38hypothetical protein Naga_100949g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9851rna9851Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications