EWM20874.1, cds9800 (CDS) Nannochloropsis gaditana

Overview
NameEWM20874.1
Unique Namecds9800
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:215159..215239 -
Alignment locationKK037256.1:214636..215043 -
Alignment locationKK037256.1:214442..214491 -
Alignment locationKK037256.1:214139..214286 -
Alignment locationKK037256.1:213927..213998 -

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Properties
Property NameValue
Protein idEWM20874.1
ProductCalycin
Orig transcript idgnl|cribi|Naga_100700g3.6423.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:215159..215239 -
KK037256.1supercontigKK037256.1:214636..215043 -
KK037256.1supercontigKK037256.1:214442..214491 -
KK037256.1supercontigKK037256.1:214139..214286 -
KK037256.1supercontigKK037256.1:213927..213998 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011038Calycin-like
IPR012674Calycin
Homology
[Close]
BLAST of EWM20874.1 vs. NCBI_GenBank
Match: gi|585100818|gb|EWM20874.1| (Calycin [Nannochloropsis gaditana])

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQYQPETSSAIAVAEDAYLVVFEREQLQAARFKEAQHRQEQQKAKEKEGENGRGQEGGKGAVLPQGSQSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEKAD 252
            MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQYQPETSSAIAVAEDAYLVVFEREQLQAARFKEAQHRQEQQKAKEKEGENGRGQEGGKGAVLPQGSQSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEKAD
Sbjct:    1 MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQYQPETSSAIAVAEDAYLVVFEREQLQAARFKEAQHRQEQQKAKEKEGENGRGQEGGKGAVLPQGSQSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEKAD 252
[Close]
BLAST of EWM20874.1 vs. NCBI_GenBank
Match: gi|298715278|emb|CBJ27927.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.781 bits (164), Expect = 2.107e-9
Identity = 48/146 (32.88%), Postives = 66/146 (45.21%), Query Frame = 0 
Query:  113 YSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQP--LDMKTTFDIGGPPSTSYIGKKAFADRMT------RDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEK 250
            + GVWK   S+   YEE L   GVP     +A      HII  +G    L V+     +  TF IG  P    IGK+++   M          E  L L     + G E+ A+RSL EGG  +V+ Q VR   +G E  A+  F++
Sbjct:  260 FYGVWKRTSSEG--YEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGEEVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKR 403
The following BLAST results are available for this feature:
BLAST of EWM20874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100818|gb|EWM20874.1|0.000e+0100.00Calycin [Nannochloropsis gaditana][more]
gi|298715278|emb|CBJ27927.1|2.107e-932.88expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9831rna9831Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications