EWM20873.1, cds9799 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20873.1
Unique Name	cds9799
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037256.1:211038..212633 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20873.1
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100700g1.6422.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:211038..212633 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding
GO:0035091	phosphatidylinositol binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001683	Phox

Homology

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BLAST of EWM20873.1 vs. NCBI_GenBank
Match: gi|585100817|gb|EWM20873.1| (uncharacterized protein Naga_100700g1 [Nannochloropsis gaditana])

HSP 1 Score: 1064.29 bits (2751), Expect = 0.000e+0
Identity = 531/531 (100.00%), Postives = 531/531 (100.00%), Query Frame = 0

Query:    1 MMNSTLASTRSTVPAWESRTDQASSTTDGSADDHFSTLSPTSHNSEAKGNFFSRVENRRKGGELVPGGKAVAMTCLTSIPERHGPHSDNAAGLRHVFTKQGNNNNSSNETGDRWTGTDSHPGINQSHVHAHVAPPSAAPASKTSASSSTPSAPSSPPSSSAALLAMRLLPSHLHRRRDSPDGANAAFPLSDPHMHEKVRAGTALLHASSPTPEHSLEKSSRTRPVRAILPESGEWMASPLPPFGTEPPPASSPPLLLPRLPPARPPSIPPPLSSLYIVSIRIIGHRISHSTQEEVLFESFPPTLPSRSGRKHVVYVIKVLTVEGRYWLLERRFADFFLLHSLLESQGRIQAAEAEGRPRKLRPAAQAQEGEEGKDDDGSERLMQRHAQQQPSVEEQVVPKGKGGGRAGVFPRRRLLGHFLPWVIEERRRALERCLQRWVGGRTGGGEGGPAGRRALRLFLEVDRYCQKPRKGAGVGGEEGRGRGPARETPLAFLPSMERLPSTFLRPFLSIFGSIACPSTCLAGSPRALAP 531
            MMNSTLASTRSTVPAWESRTDQASSTTDGSADDHFSTLSPTSHNSEAKGNFFSRVENRRKGGELVPGGKAVAMTCLTSIPERHGPHSDNAAGLRHVFTKQGNNNNSSNETGDRWTGTDSHPGINQSHVHAHVAPPSAAPASKTSASSSTPSAPSSPPSSSAALLAMRLLPSHLHRRRDSPDGANAAFPLSDPHMHEKVRAGTALLHASSPTPEHSLEKSSRTRPVRAILPESGEWMASPLPPFGTEPPPASSPPLLLPRLPPARPPSIPPPLSSLYIVSIRIIGHRISHSTQEEVLFESFPPTLPSRSGRKHVVYVIKVLTVEGRYWLLERRFADFFLLHSLLESQGRIQAAEAEGRPRKLRPAAQAQEGEEGKDDDGSERLMQRHAQQQPSVEEQVVPKGKGGGRAGVFPRRRLLGHFLPWVIEERRRALERCLQRWVGGRTGGGEGGPAGRRALRLFLEVDRYCQKPRKGAGVGGEEGRGRGPARETPLAFLPSMERLPSTFLRPFLSIFGSIACPSTCLAGSPRALAP
Sbjct:    1 MMNSTLASTRSTVPAWESRTDQASSTTDGSADDHFSTLSPTSHNSEAKGNFFSRVENRRKGGELVPGGKAVAMTCLTSIPERHGPHSDNAAGLRHVFTKQGNNNNSSNETGDRWTGTDSHPGINQSHVHAHVAPPSAAPASKTSASSSTPSAPSSPPSSSAALLAMRLLPSHLHRRRDSPDGANAAFPLSDPHMHEKVRAGTALLHASSPTPEHSLEKSSRTRPVRAILPESGEWMASPLPPFGTEPPPASSPPLLLPRLPPARPPSIPPPLSSLYIVSIRIIGHRISHSTQEEVLFESFPPTLPSRSGRKHVVYVIKVLTVEGRYWLLERRFADFFLLHSLLESQGRIQAAEAEGRPRKLRPAAQAQEGEEGKDDDGSERLMQRHAQQQPSVEEQVVPKGKGGGRAGVFPRRRLLGHFLPWVIEERRRALERCLQRWVGGRTGGGEGGPAGRRALRLFLEVDRYCQKPRKGAGVGGEEGRGRGPARETPLAFLPSMERLPSTFLRPFLSIFGSIACPSTCLAGSPRALAP 531

The following BLAST results are available for this feature:

BLAST of EWM20873.1 vs. NCBI_GenBank

BLAST of EWM20873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100817\|gb\|EWM20873.1\|	0.000e+0	100.00	uncharacterized protein Naga_100700g1 [Nannochloro...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9830	rna9830	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications