EWM20877.1, cds9795 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20877.1 vs. NCBI_GenBank
Match: gi|585100823|gb|EWM20877.1| (amp-dependent synthetase and ligase [Nannochloropsis gaditana]) HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query: 1 MVVSVSQALHHAASSNPSGVAALTYRGPSQACTKTSYNEFLARTLHVVQALSIAFGPHLVAQARVAFLCRNHELLLIYLYAVSELQLIAAPLNTRWGVEEISAALRDCDPAMVVCDADLWPLLRPSLGPESERERDTDGLGKKWEREGKGRSFDREDEGRDPQKQPSMMGFIRGVVLLHARDGGEVEAGVAATRPFLPSPPPPPPPPPRPPPPLALPFPPRCIASSTRRGARAPPKGSCSATRRNSPKHAPRSRWGSTTPGPST 264
MVVSVSQALHHAASSNPSGVAALTYRGPSQACTKTSYNEFLARTLHVVQALSIAFGPHLVAQARVAFLCRNHELLLIYLYAVSELQLIAAPLNTRWGVEEISAALRDCDPAMVVCDADLWPLLRPSLGPESERERDTDGLGKKWEREGKGRSFDREDEGRDPQKQPSMMGFIRGVVLLHARDGGEVEAGVAATRPFLPSPPPPPPPPPRPPPPLALPFPPRCIASSTRRGARAPPKGSCSATRRNSPKHAPRSRWGSTTPGPST
Sbjct: 1 MVVSVSQALHHAASSNPSGVAALTYRGPSQACTKTSYNEFLARTLHVVQALSIAFGPHLVAQARVAFLCRNHELLLIYLYAVSELQLIAAPLNTRWGVEEISAALRDCDPAMVVCDADLWPLLRPSLGPESERERDTDGLGKKWEREGKGRSFDREDEGRDPQKQPSMMGFIRGVVLLHARDGGEVEAGVAATRPFLPSPPPPPPPPPRPPPPLALPFPPRCIASSTRRGARAPPKGSCSATRRNSPKHAPRSRWGSTTPGPST 264
BLAST of EWM20877.1 vs. NCBI_GenBank
Match: gi|499839110|ref|WP_011519844.1| (fatty-acid--CoA ligase [Cupriavidus metallidurans] >gi|93358209|gb|ABF12297.1| AMP-dependent synthetase and ligase (plasmid) [Cupriavidus metallidurans CH34]) HSP 1 Score: 60.4622 bits (145), Expect = 6.791e-7 Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 0
Query: 5 VSQALHHAASSNPSGVAALTYRGPSQACTKTSYNEFLARTLHVVQALSIAFGPHLVAQARVAFLCRNHELLLIYLYAVSELQLIAAPLNTRWGVEEISAALRDCDPAMVVCDADLWPLLRPSLGPESER 133
++QALH A NPSGVA + A T++++ + R + AL G + A RVA L N + + Y++ P+NTRW V EI+ ++ DC ++++ D + L +GP ER
Sbjct: 3 LTQALHKAFRENPSGVATIF------AQRSTTFSQLIDRVARLASALR---GQGVAAGDRVAMLALNSDRYVEYIFGTLWAGAALNPVNTRWSVAEIAYSMEDCGTSVLLVDDNFLDL----IGPLRER 118
BLAST of EWM20877.1 vs. NCBI_GenBank
Match: gi|639239459|ref|WP_024569974.1| (MULTISPECIES: fatty-acid--CoA ligase [Cupriavidus] >gi|982559612|gb|KWR83819.1| fatty-acid--CoA ligase [Cupriavidus sp. SHE] >gi|984758453|gb|KWW35416.1| Long-chain-fatty-acid--CoA ligase [Cupriavidus metallidurans]) HSP 1 Score: 60.4622 bits (145), Expect = 6.791e-7 Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 0
Query: 5 VSQALHHAASSNPSGVAALTYRGPSQACTKTSYNEFLARTLHVVQALSIAFGPHLVAQARVAFLCRNHELLLIYLYAVSELQLIAAPLNTRWGVEEISAALRDCDPAMVVCDADLWPLLRPSLGPESER 133
++QALH A NPSGVA + A T++++ + R + AL G + A RVA L N + + Y++ P+NTRW V EI+ ++ DC ++++ D + L +GP ER
Sbjct: 3 LTQALHKAFRENPSGVATIF------AQRSTTFSQLIDRVARLASALR---GQGVAAGDRVAMLALNSDRYVEYIFGTLWAGAALNPVNTRWSVAEIAYSMEDCGTSVLLVDDNFLDL----IGPLRER 118 The following BLAST results are available for this feature:
BLAST of EWM20877.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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