EWM20902.1, cds9770 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20902.1
Unique Name	cds9770
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037256.1:145906..146295 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20902.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100156g5.1709.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:145906..146295 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20902.1 vs. NCBI_GenBank
Match: gi|585100857|gb|EWM20902.1| (hypothetical protein Naga_100156g5 [Nannochloropsis gaditana])

HSP 1 Score: 270.011 bits (689), Expect = 1.038e-91
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query:    1 MSNCCNLNVSEGSGEDIFLQQLVRLNRQWARSGEREGEENRPLPNCCTTRCQQRDNAAVDIGSLNHWLKIFRKGSTRVRQPSACTFLKGHVLLLCSTTRPSAVWEVAKDAFPCWEYKRRTRLPGDMTIF 129
            MSNCCNLNVSEGSGEDIFLQQLVRLNRQWARSGEREGEENRPLPNCCTTRCQQRDNAAVDIGSLNHWLKIFRKGSTRVRQPSACTFLKGHVLLLCSTTRPSAVWEVAKDAFPCWEYKRRTRLPGDMTIF
Sbjct:    1 MSNCCNLNVSEGSGEDIFLQQLVRLNRQWARSGEREGEENRPLPNCCTTRCQQRDNAAVDIGSLNHWLKIFRKGSTRVRQPSACTFLKGHVLLLCSTTRPSAVWEVAKDAFPCWEYKRRTRLPGDMTIF 129

The following BLAST results are available for this feature:

BLAST of EWM20902.1 vs. NCBI_GenBank

BLAST of EWM20902.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100857\|gb\|EWM20902.1\|	1.038e-91	100.00	hypothetical protein Naga_100156g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9801	rna9801	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications