EWM20916.1, cds9756 (CDS) Nannochloropsis gaditana

Overview
NameEWM20916.1
Unique Namecds9756
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:109902..112781 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20916.1
Productribonuclease ii
Orig transcript idgnl|cribi|Naga_100061g7.8549.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:109902..112781 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR011991WHTH_DNA-bd_dom
Homology
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|585100872|gb|EWM20916.1| (ribonuclease ii [Nannochloropsis gaditana])

HSP 1 Score: 1926.37 bits (4989), Expect = 0.000e+0
Identity = 959/959 (100.00%), Postives = 959/959 (100.00%), Query Frame = 0
Query:    1 MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTTLPPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSGKDAFTLRLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSLGSQAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRLDKLLEDTTEGGEEEEGGGEDGAGGGGWEEQPGGRAGSAQWDASQWRLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYVRLPGGWKKKGKDGAGSRRLFDLEAGKEFEVHVLRVDPARGSIELEFAREEDAVGIPMQEEE 959
            MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTTLPPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSGKDAFTLRLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSLGSQAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRLDKLLEDTTEGGEEEEGGGEDGAGGGGWEEQPGGRAGSAQWDASQWRLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYVRLPGGWKKKGKDGAGSRRLFDLEAGKEFEVHVLRVDPARGSIELEFAREEDAVGIPMQEEE
Sbjct:    1 MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTTLPPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSGKDAFTLRLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSLGSQAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRLDKLLEDTTEGGEEEEGGGEDGAGGGGWEEQPGGRAGSAQWDASQWRLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYVRLPGGWKKKGKDGAGSRRLFDLEAGKEFEVHVLRVDPARGSIELEFAREEDAVGIPMQEEE 959          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|553187464|ref|XP_005854616.1| (weakly cyanobacterial exoribonuclease ii, partial [Nannochloropsis gaditana CCMP526] >gi|422294444|gb|EKU21744.1| weakly cyanobacterial exoribonuclease ii, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 407/418 (97.37%), Postives = 409/418 (97.85%), Query Frame = 0
Query:    1 MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTT-----LPPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSGKDAFTLRLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSLGSQAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRLDKLLEDTTEGG 413
            MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTT     +PPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEA LKEEQQERTRESETLDGSGKDAFTL LPNVSPAQRYAAAVLLAAETFRFKRSVPRVLS GS+AAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLR DKLLEDTTEGG
Sbjct:    1 MNLFSASNGICRQCRFRRRRRRGKEDTTTIPSTTSCSTTIPPRSMLLLGLACALGFTHPLHAFAPRSNLPPGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEGEDEDKEEDWAMLEFKDMLLGGKKKAKPRAPKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQEQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAALKEEQQERTRESETLDGSGKDAFTLGLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSPGSEAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRSDKLLEDTTEGG 418          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|299471343|emb|CBN79298.1| (weakly similar to cyanobacterial Exoribonuclease II [Ectocarpus siliculosus])

HSP 1 Score: 237.654 bits (605), Expect = 4.670e-62
Identity = 152/452 (33.63%), Postives = 234/452 (51.77%), Query Frame = 0
Query:  449 LLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMA------TPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPD-GSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYR-RQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGS---VSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVML 889
            +LH LE F++G   + L   +++V+  +     P  AK +L+  G WT RR  E              +  A       PW  + LE A     +  RRRA   K +     G   P GRHD+R +  G Y +D  G+ F DDA   DPET EV IHI DVQ LV     L+ +AR R  + YLP GPL ++PP AL+A S SD+ VNE VT  + L P  G V ++R++L+ +PP   + +++ + LL A+   +    R  + A+++  L    + R A        G+   + R+  +GE +A+    + A  +VDE L +Y++   R  K   V +P   G    V+ G   +R+GTGPLRRY D+LAQ+Q+ ++L+G   L+K +++   + + W+   ++  R     ++ LE+ A +C A+ +A G  +AVV A  TG G EV L
Sbjct:  358 ILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQPEEEGGKPGEEGGEVGRDEAGEEGGVIPWSAEALEAAAALGGERARRRANYGKRRALEEVGAPAPFGRHDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTGSTLDDVARMRAASEYLPQGPLFMMPPTALKAMSFSDKGVNEAVTVGIRLDPKTGGVASSRVMLTTLPPAVPLTFEQTDRLLEAAEKGETGEGRLARVAKEIQALEYVGR-RSAEASGRRERGREGVKFRKGPDGETQALEVAASRAQSLVDELLTVYTQEVYRLCKRAGVAMPSLVGQQDRVATG--RSRYGTGPLRRYIDILAQRQIAAILRGSGYLNKKDLMETASYLTWRQNKTRASRDEEASRLSLEALAAHCLAQTRATGLEHAVVPARGTGRGREVRL 806          

HSP 2 Score: 65.855 bits (159), Expect = 3.236e-7
Identity = 64/210 (30.48%), Postives = 84/210 (40.00%), Query Frame = 0
Query:  146 PSPVQLQPESPVEIWHQGHLAFGNYEGRL-KKASINVRLEHGERVAVDAGQLTGIWAAPVTSEQ------EQTPASWALEEQEGGPATPEAWAVVRLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSGKDAFTLRLPNV----SPAQRYAAAVLLAAETFRFKRSVPRVL 344
            P  V LQP  P+E WH   L  GNYE  +  + S+ VR E GE + +DAGQ+ G+W     S                + +     A    WA VR +    ++    R L L  FW  A  R +     V   H A FLF   E  A L   +              +  F  R P      S  +R AAA ++A E  RFKR V + L
Sbjct:   20 PGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMSGHLPLGSVTAGADGDDIGDGGSSAAVVAGWAEVREKTRALLQGTPARGLDLGAFWRAASSRGK--GFVVTPAHAAEFLFG-AESPAKLGLRK--------------RPPFRFRSPGEAFRPSAVERAAAAHVIAGERSRFKRVVSKRL 212          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|223999411|ref|XP_002289378.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974586|gb|EED92915.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.538 bits (275), Expect = 6.231e-21
Identity = 157/575 (27.30%), Postives = 234/575 (40.70%), Query Frame = 0
Query:  444 ASQWRLLHHLEVFSLGAGVEGLSSTS----------QQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKV---QRPNRPGRRGPHGRHDY--RAS--GLGAYALDPPGSEFADDALG--FDPETG----------EVLIHIADVQALVEG----------TPELEALARQRGEAIY----LPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGP-DGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVL-LQASQARRALTKRSFSEGKRVSRV--RRNTEGELEAIG-----------FQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGR-PPLSKSEV------IRRMTQVNWQSKASQKLR--------SASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYVRLPGGWKKKGKDGAGSRRLFDLEAGKEFEVHVLRVDPARGSIELEFA 945
            A+  R+ H LE  ++G     +S             ++ L ++  P T EGA   L+R G W++        EDN        +++  PW   ILE A+    +  RRR  LAK+    + N+   +      D   RA+   L    +D   + F DD++G      TG          EVLIHIADV  L  G          T  L   A +RG++ Y     P   L  +   AL  A+  D   N CVT    +   DG +L+A L  +++     + + EA  LL  + ++D P     A   + V     S   R   +R+ +  KR SR+  R     EL+A G           FQR+  H +VD  L LY+ A    +K     +P A GS  G     R  T PLRRY D LAQ+Q +SVL     PL+  E       + R T      ++S+  R        S+ R    L +   Y A+     G  Y  V+A ++G   E ++  AG    V         G  G        L+ G++  V ++ +DP RG +++   
Sbjct:  416 AADERIAHRLECLAMGDIWNDVSDRDDEERALELDVREALSSMDLPLTSEGATNALIRIGRWSQ------SSEDN------KRKKVFEPWSPAILEAARALAMRESRRREHLAKICVTAKNNKTASQSAPSSDDLEGRANLCSLPCVCIDAKRASFRDDSVGIRLRSSTGRKVNKAASKWEVLIHIADVSDLYFGQEFRGGEDLSTDVLRRAAERRGQSRYDLPLGPLHLLPPVALEALALATNVDGLPNRCVTLWAYIDERDGKLLDAGLERTIISSPKALSFAEATSLLECN-IDDTPQSLTNAKSIISVAERNLSLWNRRHRQRNEAARKRESRLATRELVASELKAAGGQSRDDGVGGSFQRSRGHRLVDSSLDLYAYAVGTMMKRANQPIPRAAGS--GADRGGRLATAPLRRYIDGLAQRQALSVLCDYGSPLTSDECHKAAKAVARATDNIANLRSSKNRRDDSPRDRQSSGRQVSALHTLNRYLAS---TGGGQYREVKAISSGKNNECVIVGAGATGRV--------IGVSGT-------LKGGEKLLVEIIELDPERGVLDVRIV 957          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|502735514|ref|WP_012970498.1| (RNB domain-containing ribonuclease [Allochromatium vinosum] >gi|288896388|gb|ADC62224.1| ribonuclease II [Allochromatium vinosum DSM 180])

HSP 1 Score: 107.071 bits (266), Expect = 3.676e-20
Identity = 124/489 (25.36%), Postives = 195/489 (39.88%), Query Frame = 0
Query:  450 LHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYR-----RQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLA----PGSVSGGLDAARF-----------------------------GTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGQAYAVVRATATGTGTEVMLPDAGLRSYVRL 900
            L  +E  +LG       S   ++L+ALG P TPE A R L++ G+W ER    P R        A +  +  P P D+ E  +  L                                + L AYA+D  G++  DDAL  D +   + +H+ADV ALV    ELE  AR RG  +YLP+G +++LP    +   L  +EV+  ++ A+    DG + +  +  + V  +TR+ Y+   + LS      L A+      R+ AQ          +R AL + S           R  +G +      R  +  +V + + +  EA  RF     + +P A    P S     D A                                T PLRRY+D+L  QQ+ + L G PPL +++V+ R+       +A Q   +  RG+ L          K     +   VV A        +++PD  L + +R+
Sbjct:  163 LSEVERLALG------QSEHSRILEALGHPQTPESAHRALVQVGHWPERHNPHPRR------CGAPIGDIELPVP-DLDEETRLDL--------------------------------THLPAYAIDDEGNQDPDDALSLDGD--RLWVHVADVGALVRPDSELEREARARGSNLYLPEGVVNMLPWRVTEHLGLGLQEVSPALSFALRCDADGELRDIEVHRTWV-RVTRLSYEAVEQRLSEEPFAALRAFTDRFRARRFAQ--------GASRLALPEVSV----------RVEDGRVNIRPLPRLMSRELVTDAMLMAGEAAARFCLEREIPIPFAVQPPPESTDESTDLASMYARRRGFKPTRLVLEPDRHASLGLGHYTRATSPLRRYSDLLVHQQIRAWLDGAPPLDRAQVLERI------GEAEQSSIAVRRGERLSNQHWKLVYLKENPGWKGQGVVVALEERRAV-ILVPDLALEARIRV 578          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|752815683|ref|WP_041454897.1| (RNB domain-containing protein [Anaerolinea thermophila])

HSP 1 Score: 106.686 bits (265), Expect = 4.085e-20
Identity = 123/474 (25.95%), Postives = 197/474 (41.56%), Query Frame = 0
Query:  448 RLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSA---SSLE------------------DLPAYRRQAAQDLHVLLQ---ASQARRALTKRSFSEGKRVSR--VRRNTEGELEAIGFQRTPAHLMVDEFLA-LYSEAGRRFLKAHAVTLPLAPGSVSG-GLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFAT--YCAAKAKAAGQAYAVVRATATGTGTEVMLPD 891
            R L  +E F+ G           + L+ L    TPE A ++LL  GYW E     P R          +Q    P P                          P  P +   H         L ++A+D  GSE  DDA+ FD   G + +HIAD  AL+    + +  AR RGE+++LP+G +H+L   A+    L  +E++  ++  + L P G + N  ++ S V  ++R+ Y  A  L+ A   S +E                  DLP  R +  +   V +Q   + ++RR + +     G  +++  + RN          Q  P   +  + LA +Y  A RR++K        AP   +G GL     GT PLRRY D++  QQ+ S L+G   LS+ +++ R+ +V         L S  + ++L E   T  Y       +G A  V       +G  V++P+
Sbjct:  158 RYLKEIEQFACGL------MKRSRALQDLKRAETPENAHQLLLEVGYWKETYNPYPRR------FQVPLQVPVYPLP------------------------GLPEEPRKDLTH---------LLSFAIDDAGSEVPDDAISFD--EGRIWVHIADPAALILPDTQADREARARGESLHLPEGTVHMLSEDAISKFGLGKQEISPALSIGICLSPSGEIQNVEIVPSRV-RVSRLTYQNAEVLMDAPLFSEIEKWLGFHREARLRHGAVELDLPEVRVKVDEHQKVEIQPVLSLRSRRMVEEAMLLAGTAIAQWCIERNVPV---PFTIQEAPEQRVSGDTLADMY--AMRRWMKRSQYR--SAPAEHAGLGLKFYVQGTSPLRRYLDLVVHQQIRSFLRGEKLLSEQDILERIGEVE------VLLPSLRQAEILSEKHWTLVYLLQNPHWSGMAQVV---DLRPSGVVVLIPE 567          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|319995214|dbj|BAJ63985.1| (putative ribonuclease [Anaerolinea thermophila UNI-1])

HSP 1 Score: 106.686 bits (265), Expect = 4.085e-20
Identity = 123/474 (25.95%), Postives = 197/474 (41.56%), Query Frame = 0
Query:  448 RLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSA---SSLE------------------DLPAYRRQAAQDLHVLLQ---ASQARRALTKRSFSEGKRVSR--VRRNTEGELEAIGFQRTPAHLMVDEFLA-LYSEAGRRFLKAHAVTLPLAPGSVSG-GLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFAT--YCAAKAKAAGQAYAVVRATATGTGTEVMLPD 891
            R L  +E F+ G           + L+ L    TPE A ++LL  GYW E     P R          +Q    P P                          P  P +   H         L ++A+D  GSE  DDA+ FD   G + +HIAD  AL+    + +  AR RGE+++LP+G +H+L   A+    L  +E++  ++  + L P G + N  ++ S V  ++R+ Y  A  L+ A   S +E                  DLP  R +  +   V +Q   + ++RR + +     G  +++  + RN          Q  P   +  + LA +Y  A RR++K        AP   +G GL     GT PLRRY D++  QQ+ S L+G   LS+ +++ R+ +V         L S  + ++L E   T  Y       +G A  V       +G  V++P+
Sbjct:  160 RYLKEIEQFACGL------MKRSRALQDLKRAETPENAHQLLLEVGYWKETYNPYPRR------FQVPLQVPVYPLP------------------------GLPEEPRKDLTH---------LLSFAIDDAGSEVPDDAISFD--EGRIWVHIADPAALILPDTQADREARARGESLHLPEGTVHMLSEDAISKFGLGKQEISPALSIGICLSPSGEIQNVEIVPSRV-RVSRLTYQNAEVLMDAPLFSEIEKWLGFHREARLRHGAVELDLPEVRVKVDEHQKVEIQPVLSLRSRRMVEEAMLLAGTAIAQWCIERNVPV---PFTIQEAPEQRVSGDTLADMY--AMRRWMKRSQYR--SAPAEHAGLGLKFYVQGTSPLRRYLDLVVHQQIRSFLRGEKLLSEQDILERIGEVE------VLLPSLRQAEILSEKHWTLVYLLQNPHWSGMAQVV---DLRPSGVVVLIPE 569          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|1088810616|emb|SDY32405.1| (exoribonuclease-2 [Allochromatium warmingii])

HSP 1 Score: 104.375 bits (259), Expect = 2.186e-19
Identity = 111/411 (27.01%), Postives = 171/411 (41.61%), Query Frame = 0
Query:  467 STSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLA----PGSVSG-----------------------------GLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQK 844
            S   ++L ALG   TPE A R L++ G+W E     P R        A +  +  P P+    LA E                            R D   + L AYA+D  G++  DDAL  D E   + IH+ADV ALV    +LE  AR RG  +YLP+G +++LP        L  +E++  ++ AV    +G++ +  +  + V  +TR+ YD   +      L + P    +A  D +      +ARR     S  +   VS   R T G++      R  +  +V + + +  EA  R    HA+ +P A    P S                                GLD     T PLRRY+D+L  QQ+ + L G P L +++V+ R+ +    S A ++
Sbjct:  174 SDQSRILAALGHAQTPESAHRALIQIGHWPEHHNPHPRR------CGAPLVDLDLPIPD----LATET---------------------------RLDL--THLSAYAIDDEGNQDPDDALSLDGE--RLWIHVADVGALVRPESDLECEARARGANLYLPEGVINMLPGAVTAQLGLGLQEISPALSFAVCCDSEGAIRDVEIHRTWV-RVTRLSYDTVEQ-----RLHEAPFATLRAITDRY------RARRFALGASRLDLPDVS--VRVTAGQVCIRPLPRLVSRELVADAMLMAGEAVARLCSEHAIPIPFASQPPPDSSDDSADLASMYARRRGFKPTRLVLEPERHAGLGLDYYTRATSPLRRYSDLLVHQQLRAWLDGTPLLERTQVLERIGEAEQSSIAVRR 529          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|397586106|gb|EJK53507.1| (hypothetical protein THAOC_27043 [Thalassiosira oceanica])

HSP 1 Score: 104.375 bits (259), Expect = 3.830e-19
Identity = 132/433 (30.48%), Postives = 196/433 (45.27%), Query Frame = 0
Query:  444 ASQWRLLHHLEVFSLG---------AGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPG-RRGPHGRHDYR--ASGLGAYALDPPGSEFADDALG--FDPETG----------EVLIHIADVQALV---EG------TPELEALARQRGEAIY-LPDGPLHLLPPPALQAASLSDRE--VNECVTAAVTLGP-DGSVLNARLLLSLVPPITRIRYDEANELLSASSLE-DLPAYRRQAAQDL------HVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIG--FQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVL--KGRPPLSKSEV 828
            A+  R++H LE  ++G            + L    ++ L  LG P + EGA+  L+  G W+         EDN+  +         PW  D LE ++  +   ++RR  L    +  +   R+ P  + + R   S L    +D   + F DDA+G      TG          EVLIHIADV  +    EG         L   A QRG + Y LP GPLHLLPP AL+A SL   E   N CVT    +   DG +L A L  +L+   T + + +A  LL   + + ++ A    A ++L      H  L  +  +R   +   S+ + +S      +G  + +G  FQR+  H +VD  L LY+ A    ++     +P APGS+       R GT PLRRY D +AQ+Q ++VL   G  PL+K E 
Sbjct:  358 AADERIIHRLECLAMGDAWRRSDNQGDRKDLEVDVRETLIGLGLPLSSEGARSALIEVGRWSN------VSEDNLGVVV-------EPWSADTLEASRSLVKAEEKRRTLLLNTCKSIKTKPRKKPLAQLEDRFDLSSLPCVCIDAKRTSFRDDAIGIRLRSSTGRKVSKAASKWEVLIHIADVSDIYLKGEGLLPSHDIALLRHAAEQRGMSRYDLPLGPLHLLPPVALKALSLKTDEDSCNRCVTLWAYIDERDGKLLEAGLERTLIASPTALTFADATSLLDCDTDKSNVKAVLSVAHRNLSRWSRRHANLNEAARKR---EDRLSQKELISNA-TGRDGRDDGVGGSFQRSRGHRLVDSSLDLYAFALGTLMRRANQPIPRAPGSMENR--GGRLGTAPLRRYIDGMAQRQAIAVLCDYGGKPLTKEEC 771          
BLAST of EWM20916.1 vs. NCBI_GenBank
Match: gi|1210513985|dbj|GAX26767.1| (hypothetical protein FisN_9Lh034 [Fistulifera solaris])

HSP 1 Score: 102.064 bits (253), Expect = 1.490e-18
Identity = 121/411 (29.44%), Postives = 176/411 (42.82%), Query Frame = 0
Query:  448 RLLHHLEVFSLG-------AGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPGREDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAKVQRPNRPGRRGPHGRHDYRASGLGAYALDPPGSEFADDALGFD----------PETG--EVLIHIADVQALV----EGTPELEALARQRGEAIY-LPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGP-DGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQD----------LHVLLQASQARRALTKRSFSEGKRVSRV-RRNTEGELEAI------GFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSV 816
            R++  LE  +LG          E L    +QVL  +      +GAK  L + G WT +   + G+              A  W   +L  AK  +    +    ++ +   N         R D R   L    +D     F DDA+G            PE    E+LIHIADV  +     E T  L   A  RG + Y LP GP+HLLPP  LQA SL   + N  VT  V +   DG +L+A +  SLV       ++EA+ L+   +  +L ++    ++D            ++   +QAR++   RS +  KR  R+  + TE   E++      GF RT AH +VD  L LYS A    L+     +P A G   G     R  T PLRR+ D  AQ+Q+++V
Sbjct:  232 RIVLRLECLALGEQQQRQQTSNEVLELDVRQVLLEMNLSLDADGAKEALFQLGLWTAK-DQDSGK--------------AQFWTPSVLSAAKNYIQSVDQ----MSSLDSVN-------DERVDLR--HLPCICVDGQRVSFRDDAIGLRSRASTGRRCFPEASKWEILIHIADVSDIYVPKDEATSILREAAASRGISRYDLPTGPVHLLPPVILQALSLRSNKANRSVTIWVYVDERDGRLLDAGVERSLVAAPYEYSFNEASRLMEKETTNNL-SHSSNGSRDGKARAILLVTERIVTAWNQARQS---RSTAARKREERLTSKETEFHPESMFDDGRDGFVRTRAHRLVDSALDLYSYAAAALLRRVEAPIPRAQG--VGADRGGRIATSPLRRFLDGEAQRQLLAV 608          
The following BLAST results are available for this feature:
BLAST of EWM20916.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100872|gb|EWM20916.1|0.000e+0100.00ribonuclease ii [Nannochloropsis gaditana][more]
gi|553187464|ref|XP_005854616.1|0.000e+097.37weakly cyanobacterial exoribonuclease ii, partial ... [more]
gi|299471343|emb|CBN79298.1|4.670e-6233.63weakly similar to cyanobacterial Exoribonuclease I... [more]
gi|223999411|ref|XP_002289378.1|6.231e-2127.30predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|502735514|ref|WP_012970498.1|3.676e-2025.36RNB domain-containing ribonuclease [Allochromatium... [more]
gi|752815683|ref|WP_041454897.1|4.085e-2025.95RNB domain-containing protein [Anaerolinea thermop... [more]
gi|319995214|dbj|BAJ63985.1|4.085e-2025.95putative ribonuclease [Anaerolinea thermophila UNI... [more]
gi|1088810616|emb|SDY32405.1|2.186e-1927.01exoribonuclease-2 [Allochromatium warmingii][more]
gi|397586106|gb|EJK53507.1|3.830e-1930.48hypothetical protein THAOC_27043 [Thalassiosira oc... [more]
gi|1210513985|dbj|GAX26767.1|1.490e-1829.44hypothetical protein FisN_9Lh034 [Fistulifera sola... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9787rna9787Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications