EWM20924.1, cds9750 (CDS) Nannochloropsis gaditana

Overview
NameEWM20924.1
Unique Namecds9750
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:97825..99495 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20924.1
Productnf-x1-like transcription factor
Orig transcript idgnl|cribi|Naga_100061g13.8557.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:97825..99495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_ss-bd
Homology
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|585100880|gb|EWM20924.1| (nf-x1-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 1112.06 bits (2875), Expect = 0.000e+0
Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0
Query:    1 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR 556
            MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR
Sbjct:    1 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR 556          
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|1173931045|gb|OQR83620.1| (hypothetical protein ACHHYP_14489 [Achlya hypogyna])

HSP 1 Score: 78.9518 bits (193), Expect = 9.898e-12
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 0
Query:   16 KAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVL-RLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAP--AVGPSGDNSSAGGLPG--PTGARAPVVLLSEA 159
            + +    L+  Q      G G Q  DA   EL  P Y  EL +W     TK   L  +ER+I A L+D+   SL+LK M ++ RR +H LA FY L+S++ D EPRRF++LIK P  AV P   +    G P   P   RA VV+  +A
Sbjct:  457 QTIAANLLSRNQALASAFGRGPQTPDALASELA-PKYSAELQEWG---RTKFRTLCTIERQIEAMLADRGSFSLHLKAMPRDHRRMMHELAVFYQLQSVARDVEPRRFISLIKTPTSAVPPVTLSQFLQGPPAAKPRVRRAKVVVERDA 601          
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|1072232925|gb|OEU17656.1| (hypothetical protein FRACYDRAFT_225362 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.5666 bits (192), Expect = 1.350e-11
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 0
Query:    2 LTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIK 127
            L RNR FAEALG+  A Q Q       R    G+ G   D    EL+  +YP  ++  A      +  L+LE+K   FL+D K ASL L  M K  R+ VH  AEF+ L++ S+D EP+R++  +K
Sbjct:  569 LERNRAFAEALGVKPATQRQNYASGWARPTTEGDDGVN-DELLHELDAALYPDTIVAQARDRIPLL--LKLEKKWMRFLNDDKAASLPLNNMDKPSRKFVHQYAEFWNLKTESFDPEPKRYIHCVK 691          
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|299471957|emb|CBN79636.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.7146 bits (182), Expect = 2.601e-10
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   37 GQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAA 160
            G  +DA R  L R  Y   L+ WA   A + ++ +LER++A  +SD K  S  LKPM   +R+  H LA  YGL + SYD EP+R+V++IK                    G R P  LLS AA
Sbjct:  638 GDGLDAIREHLTRTNYSTYLVSWAR--ANRAELGKLERRLAELVSDPKGTSSQLKPMPSLDRKAAHELAAHYGLVTQSYDLEPKRYVSVIKQ------------------KGCRLPTRLLSSAA 741          
The following BLAST results are available for this feature:
BLAST of EWM20924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100880|gb|EWM20924.1|0.000e+0100.00nf-x1-like transcription factor [Nannochloropsis g... [more]
gi|1173931045|gb|OQR83620.1|9.898e-1238.93hypothetical protein ACHHYP_14489 [Achlya hypogyna... [more]
gi|1072232925|gb|OEU17656.1|1.350e-1138.89hypothetical protein FRACYDRAFT_225362 [Fragilario... [more]
gi|299471957|emb|CBN79636.1|2.601e-1037.90conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9781rna9781Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications