EWM20924.1, cds9750 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|585100880|gb|EWM20924.1| (nf-x1-like transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 1112.06 bits (2875), Expect = 0.000e+0 Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0 Query: 1 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR 556 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR Sbjct: 1 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAAAAEVLARRHTGAHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPPQGQSSAQDGQQRWGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNAGHEGGKLRGGGARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEKQERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEELEVACSACTFKHLCDYCPMCMTPRPTGR 556
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|1173931045|gb|OQR83620.1| (hypothetical protein ACHHYP_14489 [Achlya hypogyna]) HSP 1 Score: 78.9518 bits (193), Expect = 9.898e-12 Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 0 Query: 16 KAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVL-RLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAP--AVGPSGDNSSAGGLPG--PTGARAPVVLLSEA 159 + + L+ Q G G Q DA EL P Y EL +W TK L +ER+I A L+D+ SL+LK M ++ RR +H LA FY L+S++ D EPRRF++LIK P AV P + G P P RA VV+ +A Sbjct: 457 QTIAANLLSRNQALASAFGRGPQTPDALASELA-PKYSAELQEWG---RTKFRTLCTIERQIEAMLADRGSFSLHLKAMPRDHRRMMHELAVFYQLQSVARDVEPRRFISLIKTPTSAVPPVTLSQFLQGPPAAKPRVRRAKVVVERDA 601
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|1072232925|gb|OEU17656.1| (hypothetical protein FRACYDRAFT_225362 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 78.5666 bits (192), Expect = 1.350e-11 Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 0 Query: 2 LTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIK 127 L RNR FAEALG+ A Q Q R G+ G D EL+ +YP ++ A + L+LE+K FL+D K ASL L M K R+ VH AEF+ L++ S+D EP+R++ +K Sbjct: 569 LERNRAFAEALGVKPATQRQNYASGWARPTTEGDDGVN-DELLHELDAALYPDTIVAQARDRIPLL--LKLEKKWMRFLNDDKAASLPLNNMDKPSRKFVHQYAEFWNLKTESFDPEPKRYIHCVK 691
BLAST of EWM20924.1 vs. NCBI_GenBank
Match: gi|299471957|emb|CBN79636.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 74.7146 bits (182), Expect = 2.601e-10 Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 0 Query: 37 GQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSAGGLPGPTGARAPVVLLSEAA 160 G +DA R L R Y L+ WA A + ++ +LER++A +SD K S LKPM +R+ H LA YGL + SYD EP+R+V++IK G R P LLS AA Sbjct: 638 GDGLDAIREHLTRTNYSTYLVSWAR--ANRAELGKLERRLAELVSDPKGTSSQLKPMPSLDRKAAHELAAHYGLVTQSYDLEPKRYVSVIKQ------------------KGCRLPTRLLSSAA 741 The following BLAST results are available for this feature:
BLAST of EWM20924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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