EWM20938.1, cds9735 (CDS) Nannochloropsis gaditana

Overview
NameEWM20938.1
Unique Namecds9735
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:61065..61215 -
Alignment locationKK037256.1:60617..60825 -
Alignment locationKK037256.1:60333..60480 -
Alignment locationKK037256.1:59700..60187 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20938.1
Productcytochrome b-561 domain containing 1
Orig transcript idgnl|cribi|Naga_100061g28.8571.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:61065..61215 -
KK037256.1supercontigKK037256.1:60617..60825 -
KK037256.1supercontigKK037256.1:60333..60480 -
KK037256.1supercontigKK037256.1:59700..60187 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004877Cyt_b561_dom
IPR006593Cyt_b561/ferric_Rdtase_TM
Homology
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|585100894|gb|EWM20938.1| (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MIVSNIYNRLKSLVRDSHCIPETPDGSGGGLLVEDDDNYRQRPFVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 331
            MIVSNIYNRLKSLVRDSHCIPETPDGSGGGLLVEDDDNYRQRPFVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI
Sbjct:    1 MIVSNIYNRLKSLVRDSHCIPETPDGSGGGLLVEDDDNYRQRPFVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 331          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|585100895|gb|EWM20939.1| (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0
Identity = 286/299 (95.65%), Postives = 286/299 (95.65%), Query Frame = 0
Query:   39 YRQRP------FVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 331
            YR  P      F    D VTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI
Sbjct:   20 YRTLPRLTYPLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDSGDFTDPI 318          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|299117222|emb|CBN75184.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 2.431e-35
Identity = 88/270 (32.59%), Postives = 132/270 (48.89%), Query Frame = 0
Query:   48 LDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPF-------RPTEDGG---LTDRELIELRREGGCDGGDEK 307
            LD +T  R   VA  K     V+   + H+    + L +   + ++  +L LFS H   M++  V+ M EG++AYRNH     LSPIM N  + K + IH    +LA++   +G+ FI  NKV    +ILP + H  +G +    MV+Q++ G  K  +  SGVI    R   G  YRWHGK GL+LYD++  +V  GL    G  ++  ++ L +   W  V+LQM              T+D     LT  E  +L  EG  +   E+
Sbjct:   12 LDKITTARARVVAASKS-PAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNR---GKKYRWHGKMGLLLYDLSTVSVVLGLWTFFGLSVVAVVVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGER 277          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|302834563|ref|XP_002948844.1| (hypothetical protein VOLCADRAFT_116942 [Volvox carteri f. nagariensis] >gi|300266035|gb|EFJ50224.1| hypothetical protein VOLCADRAFT_116942 [Volvox carteri f. nagariensis])

HSP 1 Score: 63.929 bits (154), Expect = 7.236e-8
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 0
Query:   96 TLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPT------SIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGF 252
            T  LF++HPV M++G V+FM E +L+Y+        +PI+    R   + IH G H+ A VCV +G    F   ++ HR  LP       S H+ LG    AL+ LQ++ GL      R G+   + R   G L+R+    G   +  A+  VATGL + + F
Sbjct:   67 TSKLFNWHPVLMTLGFVVFMAEALLSYQ--------APIIPGLPREVRKRIHLGCHLAATVCVFLG----FVAVLQSHRLKLPDPMPDWYSPHSFLGLTAIALVGLQVLVGLYSYVWPRLGL---SHRMALGPLHRF---WGAAAWLAALGAVATGLQEKVTF 211          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|953453187|ref|XP_014570146.1| (hypothetical protein L969DRAFT_81397 [Mixia osmundae IAM 14324] >gi|358058693|dbj|GAA95656.1| hypothetical protein E5Q_02312 [Mixia osmundae IAM 14324] >gi|658166845|gb|KEI41555.1| hypothetical protein L969DRAFT_81397 [Mixia osmundae IAM 14324])

HSP 1 Score: 62.3882 bits (150), Expect = 1.660e-7
Identity = 64/238 (26.89%), Postives = 97/238 (40.76%), Query Frame = 0
Query:   24 PDGSGGGLLVEDDDNYRQRPFV---KTLDNV---TELRRNFVARLKILDPLVESNLIIH------LFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKS 249
            PD S         DN   RP +    T DN      + +   +   +L+ L    + +       LFAI+   W+  I     H   LFS+HP   S+  V F   GIL          L P     A+ K QN+H+ F  LA V ++ G+A I  NK K H      + H  LG    +L+V Q I GL +       ++GG  +      +++H   G  L+ + + T  T +  +
Sbjct:    6 PDASVRSPSSAQSDNGEDRPLLGNSTTADNPDLEESMAKAQASYASLLNNLANRTMALAAQVGVILFAITT--WVMLIE----HPAGLFSYHPALQSLAIVFF-GYGILV---------LQPTKSPQAKRKGQNVHQIFQGLALVSILGGVAIIIFNK-KLHEAAHFATWHGILGITTVSLLVFQAIVGLLQAYPAGQKLLGGEAK--AKATWKYHRALGYTLFILLILTPMTAVTSA 224          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|813158013|ref|XP_012202355.1| (hypothetical protein SPRG_07687 [Saprolegnia parasitica CBS 223.65] >gi|641532967|gb|KDO26974.1| hypothetical protein SPRG_07687 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 62.3882 bits (150), Expect = 1.675e-7
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   97 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLV 247
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL 
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGMVGKLTYASGIASTILGLT 227          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|669169219|ref|XP_008619958.1| (hypothetical protein SDRG_15560 [Saprolegnia diclina VS20] >gi|530728378|gb|EQC26620.1| hypothetical protein SDRG_15560 [Saprolegnia diclina VS20])

HSP 1 Score: 62.003 bits (149), Expect = 1.965e-7
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   97 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLV 247
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL 
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGFVGKLTYASGIASTILGLT 227          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|669169223|ref|XP_008619960.1| (hypothetical protein SDRG_15562 [Saprolegnia diclina VS20] >gi|530728380|gb|EQC26622.1| hypothetical protein SDRG_15562 [Saprolegnia diclina VS20])

HSP 1 Score: 61.6178 bits (148), Expect = 2.461e-7
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   97 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLV 247
            + L   H + M++G V F +E +L YR        SP    + R++ +NIH+  H       ++G+A I  ++    + + P + H  +GF+  ALM+LQM  G  KL       +   GR     ++ WHG  G + Y   +A+   GL 
Sbjct:   91 VNLLFVHILMMTLGWVAFSSEAMLVYRPFDGLNARSP----NKRIQ-RNIHKFMHYAVLATTLLGLAGILISRGMAGKRLFPHNKHGWMGFITVALMLLQMEVGRRKLK-----FLQFQGR----TIFEWHGFVGKLTYASGIASTILGLT 227          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|1173927838|gb|OQR81641.1| (hypothetical protein THRCLA_23332 [Thraustotheca clavata])

HSP 1 Score: 61.6178 bits (148), Expect = 2.555e-7
Identity = 41/150 (27.33%), Postives = 69/150 (46.00%), Query Frame = 0
Query:   97 LTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGL 246
            L L+  H + M++  V F +E +L YR        SP    + R++ +NIH+        C ++G+A I  ++    + + P + H  +GF+   LM+LQM  G  KL          + +  G  +Y WH   G + Y   +A+   GL
Sbjct:   81 LNLYFVHILLMTVAWVAFSSEALLVYRPFDGLNTRSP----NRRIQ-RNIHKIMLYSVGACTLLGLAAILFSRAMAGKRLFPHNWHGWMGFITIGLMLLQMEIGRRKLK---------HLQFQGRTIYEWHAVVGKLTYASGIASTLFGL 216          
BLAST of EWM20938.1 vs. NCBI_GenBank
Match: gi|1108934812|ref|XP_010736985.2| (PREDICTED: cytochrome b561 domain-containing protein 2 [Larimichthys crocea] >gi|808878387|gb|KKF26639.1| Cytochrome b561 domain-containing protein 2 [Larimichthys crocea])

HSP 1 Score: 60.4622 bits (145), Expect = 4.637e-7
Identity = 49/142 (34.51%), Postives = 67/142 (47.18%), Query Frame = 0
Query:   98 TLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILP--TSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGV--LYRWHGKAGLILY 235
            +LFS+HP  M++   LFMTE IL +  H      SPI R   + K   +H     L   C V+G+A IF N   KH    P  TS H  LG L   ++VLQ +A +         +I  +   G  +  L R+H   GL+ Y
Sbjct:   45 SLFSWHPFLMTLAFSLFMTEAILLFSPHG-----SPIKRFPHKTK-GRVHWILQCLCVSCAVLGLAAIFYN---KHLNGKPHFTSWHGLLGLLTVCVVVLQSLAAVP--------LIYHSLAKGWSLAKLKRYHAATGLVTY 169          
The following BLAST results are available for this feature:
BLAST of EWM20938.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100894|gb|EWM20938.1|0.000e+0100.00cytochrome b-561 domain containing 1 [Nannochlorop... [more]
gi|585100895|gb|EWM20939.1|0.000e+095.65cytochrome b-561 domain containing 1 [Nannochlorop... [more]
gi|299117222|emb|CBN75184.1|2.431e-3532.59expressed unknown protein [Ectocarpus siliculosus][more]
gi|302834563|ref|XP_002948844.1|7.236e-833.74hypothetical protein VOLCADRAFT_116942 [Volvox car... [more]
gi|953453187|ref|XP_014570146.1|1.660e-726.89hypothetical protein L969DRAFT_81397 [Mixia osmund... [more]
gi|813158013|ref|XP_012202355.1|1.675e-728.48hypothetical protein SPRG_07687 [Saprolegnia paras... [more]
gi|669169219|ref|XP_008619958.1|1.965e-728.48hypothetical protein SDRG_15560 [Saprolegnia dicli... [more]
gi|669169223|ref|XP_008619960.1|2.461e-728.48hypothetical protein SDRG_15562 [Saprolegnia dicli... [more]
gi|1173927838|gb|OQR81641.1|2.555e-727.33hypothetical protein THRCLA_23332 [Thraustotheca c... [more]
gi|1108934812|ref|XP_010736985.2|4.637e-734.51PREDICTED: cytochrome b561 domain-containing prote... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9766rna9766Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications