EWM20952.1, cds9721 (CDS) Nannochloropsis gaditana

Overview
NameEWM20952.1
Unique Namecds9721
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:28924..29142 -
Alignment locationKK037256.1:28835..28846 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20952.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100455g6.3252.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:28924..29142 -
KK037256.1supercontigKK037256.1:28835..28846 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|585100910|gb|EWM20952.1| (hypothetical protein Naga_100455g6 [Nannochloropsis gaditana])

HSP 1 Score: 156.762 bits (395), Expect = 1.405e-48
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query:    1 MSDDVRVRKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTME 76
            MSDDVRVRKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTME
Sbjct:    1 MSDDVRVRKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTME 76          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|695432195|ref|XP_009530872.1| (hypothetical protein PHYSODRAFT_514094 [Phytophthora sojae] >gi|348673624|gb|EGZ13443.1| hypothetical protein PHYSODRAFT_514094 [Phytophthora sojae])

HSP 1 Score: 87.8113 bits (216), Expect = 1.258e-18
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0
Query:    8 RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            R ++PIY A+DAR YK AIKLC  K + + DIV+ LKAH LER GRV+EALD+CR V  +QP DET +
Sbjct:    3 RYVRPIYEAIDARQYKNAIKLCAHKRVAQLDIVQVLKAHCLERTGRVDEALDICRRVQLKQPTDETLL 70          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|970629543|gb|KUF76778.1| (N-alpha-acetyltransferase 25 [Phytophthora nicotianae] >gi|970657933|gb|KUF95757.1| hypothetical protein AM588_10006847 [Phytophthora nicotianae])

HSP 1 Score: 86.6557 bits (213), Expect = 3.601e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|566015131|gb|ETI38042.1| (hypothetical protein F443_16137 [Phytophthora parasitica P1569])

HSP 1 Score: 86.6557 bits (213), Expect = 3.672e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|675204693|ref|XP_008911231.1| (hypothetical protein PPTG_15689 [Phytophthora parasitica INRA-310] >gi|567981248|gb|ETL31691.1| hypothetical protein L916_15578 [Phytophthora parasitica] >gi|568010738|gb|ETL84921.1| hypothetical protein L917_15401 [Phytophthora parasitica] >gi|568040618|gb|ETM38066.1| hypothetical protein L914_15535 [Phytophthora parasitica] >gi|568088601|gb|ETN03458.1| hypothetical protein PPTG_15689 [Phytophthora parasitica INRA-310] >gi|570318863|gb|ETO66811.1| hypothetical protein F444_16122 [Phytophthora parasitica P1976])

HSP 1 Score: 86.6557 bits (213), Expect = 3.744e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|567952584|gb|ETK78256.1| (hypothetical protein L915_15683 [Phytophthora parasitica])

HSP 1 Score: 86.6557 bits (213), Expect = 3.781e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|570942674|gb|ETP07931.1| (hypothetical protein F441_15965 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 86.2705 bits (212), Expect = 4.352e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|570973295|gb|ETP35962.1| (hypothetical protein F442_15990 [Phytophthora parasitica P10297])

HSP 1 Score: 86.2705 bits (212), Expect = 5.100e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MSDDVRV--RKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+ R+  R ++PIY A+D R YK AIKLC  + +   DIV+ LKAH LER GRVEEALD+CR +  ++P DET +
Sbjct:    1 MSDEARLMARFVRPIYEAIDNRQYKNAIKLCAHRRVAHLDIVQVLKAHCLERTGRVEEALDICRRIQLKRPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|953501426|emb|CEG37427.1| (Mitochondrial inheritance and actin cytoskeleton organization protein [Plasmopara halstedii])

HSP 1 Score: 84.3445 bits (207), Expect = 2.405e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:    1 MSDD--VRVRKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            MSD+  +  R ++PIY A+D   YK AIKLC  K +   DIV+ LKAH+LER GRVEEAL++CR +  +QP DET +
Sbjct:    1 MSDNAWLMARYVRPIYQAIDDHQYKNAIKLCSHKRVAHLDIVQVLKAHSLERTGRVEEALNICRYLQLKQPTDETLL 77          
BLAST of EWM20952.1 vs. NCBI_GenBank
Match: gi|1214693084|gb|OWZ07511.1| (hypothetical protein PHMEG_00020085, partial [Phytophthora megakarya])

HSP 1 Score: 82.0333 bits (201), Expect = 5.373e-17
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0
Query:    4 DVRVRKLQPIYNALDARNYKMAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREVASRQPRDETTM 75
            DV  R ++PIY A+D R YK AIKLC  K +   DIV+ LKAH  ER GRV+EALD+CR +  ++P D+T +
Sbjct:    3 DVLSRYVRPIYEAIDNRQYKNAIKLCAHKRVAHLDIVQVLKAHCFERTGRVDEALDICRRIQLKRPTDDTLL 74          
The following BLAST results are available for this feature:
BLAST of EWM20952.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100910|gb|EWM20952.1|1.405e-48100.00hypothetical protein Naga_100455g6 [Nannochloropsi... [more]
gi|695432195|ref|XP_009530872.1|1.258e-1860.29hypothetical protein PHYSODRAFT_514094 [Phytophtho... [more]
gi|970629543|gb|KUF76778.1|3.601e-1854.55N-alpha-acetyltransferase 25 [Phytophthora nicotia... [more]
gi|566015131|gb|ETI38042.1|3.672e-1854.55hypothetical protein F443_16137 [Phytophthora para... [more]
gi|675204693|ref|XP_008911231.1|3.744e-1854.55hypothetical protein PPTG_15689 [Phytophthora para... [more]
gi|567952584|gb|ETK78256.1|3.781e-1854.55hypothetical protein L915_15683 [Phytophthora para... [more]
gi|570942674|gb|ETP07931.1|4.352e-1854.55hypothetical protein F441_15965 [Phytophthora para... [more]
gi|570973295|gb|ETP35962.1|5.100e-1854.55hypothetical protein F442_15990 [Phytophthora para... [more]
gi|953501426|emb|CEG37427.1|2.405e-1753.25Mitochondrial inheritance and actin cytoskeleton o... [more]
gi|1214693084|gb|OWZ07511.1|5.373e-1752.78hypothetical protein PHMEG_00020085, partial [Phyt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9752rna9752Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications