EWM20955.1, cds9717 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|585100922|gb|EWM20955.1| (kh domain containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 Query: 1 MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257 MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG Sbjct: 1 MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|553186678|ref|XP_005854467.1| (kh domain protein [Nannochloropsis gaditana CCMP526] >gi|422294591|gb|EKU21891.1| kh domain protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 81.2629 bits (199), Expect = 8.891e-14 Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0 Query: 110 AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257 ++ +T+L+P +A+GL+IG+ G T + ++ ++ ++VQDY+++ G +RGI L GS+E + + ++ L RR + +EG E G + R T++W IP EL G LIGK+G I ESGA+ R G Sbjct: 233 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN-VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNSII---------REGNLEDTLFAGPD----PRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLG 366
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|299116377|emb|CBN74642.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 1.185e-13 Identity = 50/153 (32.68%), Postives = 82/153 (53.59%), Query Frame = 0 Query: 113 VTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGRE----------GEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRR 255 ++++ P DA+G++IGKGG L+ + E+ + + +Q+ + + G+KERG+ L GS + + NVE+ + + L RR ++ A EE E E KA G E + K +RW++ G LIGK G G + I+ SGA+ R Sbjct: 99 LSIMCPSDAMGMLIGKGGSGLREMQEK--TGVKVSLQETKSIPEGAKERGVGLSGSLDCVANVEKLIFEKLNARRVTSL-APSPAEEEFEMAYEAAKAAGIEPNGATDVSDMNDPNKITVVRWIMDNAHCGWLIGKGGSGIQNIEATSGAQVR 248
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|585103468|gb|EWM22832.1| (rna-binding protein nova-2 [Nannochloropsis gaditana]) HSP 1 Score: 77.0258 bits (188), Expect = 1.020e-12 Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0 Query: 110 AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257 ++ +T+L+P +A+GL+IG+ G T + ++ ++ ++VQDY+++ G +RGI L GS+E + + ++ L RR + +EG E G + R T++W IP EL G LIGK+G I ESGA+ R G Sbjct: 108 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN-VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNSII---------REGNLEDTLFAGPD----PRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLG 241
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|685827543|emb|CEF62465.1| (Pasilla [Strongyloides ratti]) HSP 1 Score: 67.0106 bits (162), Expect = 3.115e-9 Identity = 49/173 (28.32%), Postives = 85/173 (49.13%), Query Frame = 0 Query: 91 SAAKRQSTGAGVASSPPPR----------AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAK 253 +A KRQ+ G PP + + + +L+P AVG +IGKGG+T++ L + +S C + + QEV G+ ER +++G +A V +ID ++ + +A + + K G ER K ++ L+P +G++IGK G +EI+ +GA Sbjct: 16 NAQKRQNNDKG---GPPAKRGNSLPMDKDSVAIKILIPASAVGAIIGKGGETMRNL--KNDSGCRVHMSKNQEVYHGTNERICLVKGKIDASMKVMNVIIDKIKEKSDP--NAPSDNYDLK-------------GVERG-KMMKLLVPNTSAGMVIGKSGSNIKEIRDNTGAN 167
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|72084060|ref|XP_790705.1| (PREDICTED: RNA-binding protein Nova-1 [Strongylocentrotus purpuratus]) HSP 1 Score: 63.1586 bits (152), Expect = 9.163e-8 Identity = 43/162 (26.54%), Postives = 81/162 (50.00%), Query Frame = 0 Query: 92 AAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAK 253 A KR + G+G + + +L+P A G +IGKGGQT+ +L + ++ +++ + G++ER +L G E++ NV ++D ++ Q V A E + ER R+ ++ ++P +GL+IGK G + I ++SG++ Sbjct: 58 ATKRTNLGSGPGGPIDDNKYMLKMLIPSTAAGSIIGKGGQTIAQL--QRDTGTNVKLSKANDFYPGTQERVALLTGPVESLNNVAVFILDKIKESPQLGVKAGAETITSP---------------ERARQ-VKIVVPNSTAGLIIGKGGAMIKSIMEQSGSR 201 The following BLAST results are available for this feature:
BLAST of EWM20955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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