EWM20955.1, cds9717 (CDS) Nannochloropsis gaditana

Overview
NameEWM20955.1
Unique Namecds9717
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:13756..14526 -

Link to JBrowse

Properties
Property NameValue
Start range13756
Start range.
Protein idEWM20955.1
Productkh domain containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100968g2.5827.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:13756..14526 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|585100922|gb|EWM20955.1| (kh domain containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query:    1 MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257
            MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG
Sbjct:    1 MIKTPDGGWSRYFDLCDTPLTPFPLVPPLSRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257          
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|553186678|ref|XP_005854467.1| (kh domain protein [Nannochloropsis gaditana CCMP526] >gi|422294591|gb|EKU21891.1| kh domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 81.2629 bits (199), Expect = 8.891e-14
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0
Query:  110 AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257
            ++ +T+L+P +A+GL+IG+ G T + ++   ++   ++VQDY+++  G  +RGI L GS+E +   +  ++  L  RR   +         +EG  E     G +     R T++W IP EL G LIGK+G     I  ESGA+ R G
Sbjct:  233 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN-VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNSII---------REGNLEDTLFAGPD----PRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLG 366          
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|299116377|emb|CBN74642.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 1.185e-13
Identity = 50/153 (32.68%), Postives = 82/153 (53.59%), Query Frame = 0
Query:  113 VTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGRE----------GEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRR 255
            ++++ P DA+G++IGKGG  L+ + E+  +   + +Q+ + +  G+KERG+ L GS + + NVE+ + + L  RR  ++ A    EE  E   E  KA G E           +  K   +RW++     G LIGK G G + I+  SGA+ R
Sbjct:   99 LSIMCPSDAMGMLIGKGGSGLREMQEK--TGVKVSLQETKSIPEGAKERGVGLSGSLDCVANVEKLIFEKLNARRVTSL-APSPAEEEFEMAYEAAKAAGIEPNGATDVSDMNDPNKITVVRWIMDNAHCGWLIGKGGSGIQNIEATSGAQVR 248          
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|585103468|gb|EWM22832.1| (rna-binding protein nova-2 [Nannochloropsis gaditana])

HSP 1 Score: 77.0258 bits (188), Expect = 1.020e-12
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0
Query:  110 AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAKRREG 257
            ++ +T+L+P +A+GL+IG+ G T + ++   ++   ++VQDY+++  G  +RGI L GS+E +   +  ++  L  RR   +         +EG  E     G +     R T++W IP EL G LIGK+G     I  ESGA+ R G
Sbjct:  108 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN-VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNSII---------REGNLEDTLFAGPD----PRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLG 241          
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|685827543|emb|CEF62465.1| (Pasilla [Strongyloides ratti])

HSP 1 Score: 67.0106 bits (162), Expect = 3.115e-9
Identity = 49/173 (28.32%), Postives = 85/173 (49.13%), Query Frame = 0
Query:   91 SAAKRQSTGAGVASSPPPR----------AHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAK 253
            +A KRQ+   G    PP +          +  + +L+P  AVG +IGKGG+T++ L  + +S C + +   QEV  G+ ER  +++G  +A   V   +ID ++ +     +A  +  + K             G ER  K ++ L+P   +G++IGK G   +EI+  +GA 
Sbjct:   16 NAQKRQNNDKG---GPPAKRGNSLPMDKDSVAIKILIPASAVGAIIGKGGETMRNL--KNDSGCRVHMSKNQEVYHGTNERICLVKGKIDASMKVMNVIIDKIKEKSDP--NAPSDNYDLK-------------GVERG-KMMKLLVPNTSAGMVIGKSGSNIKEIRDNTGAN 167          
BLAST of EWM20955.1 vs. NCBI_GenBank
Match: gi|72084060|ref|XP_790705.1| (PREDICTED: RNA-binding protein Nova-1 [Strongylocentrotus purpuratus])

HSP 1 Score: 63.1586 bits (152), Expect = 9.163e-8
Identity = 43/162 (26.54%), Postives = 81/162 (50.00%), Query Frame = 0
Query:   92 AAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEEGNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAK 253
            A KR + G+G         + + +L+P  A G +IGKGGQT+ +L  + ++   +++    +   G++ER  +L G  E++ NV   ++D ++   Q  V A  E   +                ER R+ ++ ++P   +GL+IGK G   + I ++SG++
Sbjct:   58 ATKRTNLGSGPGGPIDDNKYMLKMLIPSTAAGSIIGKGGQTIAQL--QRDTGTNVKLSKANDFYPGTQERVALLTGPVESLNNVAVFILDKIKESPQLGVKAGAETITSP---------------ERARQ-VKIVVPNSTAGLIIGKGGAMIKSIMEQSGSR 201          
The following BLAST results are available for this feature:
BLAST of EWM20955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585100922|gb|EWM20955.1|0.000e+0100.00kh domain containing protein, partial [Nannochloro... [more]
gi|553186678|ref|XP_005854467.1|8.891e-1433.11kh domain protein [Nannochloropsis gaditana CCMP52... [more]
gi|299116377|emb|CBN74642.1|1.185e-1332.68conserved unknown protein [Ectocarpus siliculosus][more]
gi|585103468|gb|EWM22832.1|1.020e-1233.11rna-binding protein nova-2 [Nannochloropsis gadita... [more]
gi|685827543|emb|CEF62465.1|3.115e-928.32Pasilla [Strongyloides ratti][more]
gi|72084060|ref|XP_790705.1|9.163e-826.54PREDICTED: RNA-binding protein Nova-1 [Strongyloce... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9748rna9748Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications