EWM20962.1, cds9712 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|585100934|gb|EWM20962.1| (trna-specific adenosine deaminase-like protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0 Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0
Query: 1 MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK 417
MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK
Sbjct: 1 MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK 417
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|553182526|ref|XP_005853743.1| (trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526] >gi|422295318|gb|EKU22617.1| trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 276.944 bits (707), Expect = 8.966e-90 Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0
Query: 232 GRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS 367
GRELAGGAPGLSVLS SRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRG+LPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS
Sbjct: 1 GRELAGGAPGLSVLSISRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGSLPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS 136
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|298715154|emb|CBJ27842.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 121.709 bits (304), Expect = 1.878e-27 Identity = 116/372 (31.18%), Postives = 157/372 (42.20%), Query Frame = 0
Query: 28 VEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVR--KDPDSSSLL-LLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQ--GIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGG-------------------REGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVF 375
++VLVS I P A++ +K L LLP A+L HLKR+R + P++ LL +LLS P YHAL + R + + L V VP+ +TR + WP+ + EE + ++D D +GF MR D + AE G R + GG+ RE V +E ++ + + GR LA G+ V E S+ K+ ER GK S S+C D L +QYLCTG D Y+T EPC+MCAMALVHSR+RRV Y + E G L S +H L SLNH YRVF
Sbjct: 19 LDVLVSAIKPRQASQVVKDLSELLPLERAKLNHLKRIRSSQHPETGRLLQVLLSPPDMYHALDEAKRKEIVERYGLEPTVHAVPKLEPRTRAQFLSGGSAWPMIFHHSTSEEARRAARVIPEQD------ALDAIGF-------MR------DALVDAETG----RQQNGGRPTVGAVLVDPLGGCGGRRGRVVATASRERQKVRDEEPASMRDHPLHHAVMLCVQGVGRALAAGSRQEKVARKQEEDSAGGKL--------------GKEREGKGSESLCSDA-------------DPPGGVVEVLSPEQYLCTGFDLYVTREPCLMCAMALVHSRVRRVIYGVRDTERGCLGSVTMLHTLTSLNHNYRVF 340
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|1183504429|gb|ORZ28012.1| (cytidine deaminase-like protein [Lobosporangium transversale]) HSP 1 Score: 110.923 bits (276), Expect = 3.418e-23 Identity = 110/403 (27.30%), Postives = 162/403 (40.20%), Query Frame = 0
Query: 27 TVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSL---LLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTY-QGIE---EVVEKEKAALDRD-RKGKEVFADCLGFG-----------------------------WRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREG-GREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFN--VLIAGERRGKPSGSVCFQGV-----HGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEG 384
T V ++ I P N LK + LP P L HLK++RK ++ + ++L A A +L E ++ + VP+ P TR++ E WP+++ + I EV + E + R R E+ D + G H VM C+++VA SA + + G G + RE V + KE + T + + S+ + S L G L AG+ + + SV V G+ + E K+ P+ YLCTG D Y+THEPCVMC+MALVHSRI RVFY +P G L S + +H+ PSLNH + V+R G E G
Sbjct: 16 TENVYIATIEPKQTNNVLKFIRGQLP-PTKDLDHLKQIRKLTENGVVKLDIVLCQESAITLADLETLLTTFELAENVRPRIHGVPKFPPLTRNQFETWKMAWPISFREDITRHPEVSDAELETIMRHMRYTWELTKDAVSKGELPSVAAIVNPAIQQVLATAYDTRNSTKHILNHAVMNCIEQVASRERSAFEHHMRNKETDGNDDGSMQTQARESSPVCGDKRKEHPD-----------------------------TPTDNTVSVSLSSPLIEGSAHKRLALQAGDTFAEQTQSVATVMVEKEDDQGQEVVVVVESETKDEG-ENTQPKKAYLCTGYDVYLTHEPCVMCSMALVHSRIGRVFYTIPMKGSGGLGSIYKIHSHPSLNHHFFVYRNVGYENLG 387
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|965800462|ref|XP_014949005.1| (PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries musimon] >gi|965938135|ref|XP_004023504.3| PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries]) HSP 1 Score: 102.449 bits (254), Expect = 1.734e-20 Identity = 118/377 (31.30%), Postives = 156/377 (41.38%), Query Frame = 0
Query: 21 ADEEPTTVEVLVSPIAPHL----ANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSS-----LLLLLSTPAR-YHALTPSLRLALEQDLDL----HVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGA---LPEDQ----YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
++++ VE++++ AP L +R LK + ++ P P AQ HLKRVR PD S +LL L+ PAR +L L D+D + VP RP TR + E A WP T+ DR+ A CL F + M+ M R + G R G V A GR LA G T++S + + + V I RG QG NL A A G+ L ED+ Y+CTG D Y+T EPC MCAMALVHSR+RRVFY P P +GAL +HF +HA P LNHR++ FR
Sbjct: 48 SEQQSGAVELVLAYAAPILDKSQTSRLLKEVSAVHPLP-AQ-PHLKRVRPSPDPSCPHSLEILLCLAGPARDSRSLA---ELLPRPDVDTRGLGQPFLVPVPVRPPLTRSQFEEARTHWPTTFH--------------EDRQVTRALAGCL-FSAQERAAMQA---------------HMERAVWAAQQAASRGLRAVG------------------AVVVDPASGRVLATG--------HDCSTATSPLLHAAM-------VCIDLVARG--------QGCGAYNLAPHPACSFAPAVRAGSVRKLDEDEDGLPYVCTGYDLYITREPCTMCAMALVHSRVRRVFYGAPSP-DGALGTHFRLHARPDLNHRFQAFR 347
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|407850447|gb|EKG04840.1| (hypothetical protein TCSYLVIO_004095 [Trypanosoma cruzi]) HSP 1 Score: 100.523 bits (249), Expect = 9.718e-20 Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 315 YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQ---EEEGQPFPSQGGRGEGGSE 399
YL +D +++HEPCVMC+MALVHSR+RRVFYC P G L S F +HA+PSLNH +RVFR +E P S G G SE
Sbjct: 292 YLANEIDLFVSHEPCVMCSMALVHSRVRRVFYCFANPTHGGLGSVFSIHAIPSLNHHFRVFRCSASWLCDESNSPPDSSAAPGGGSSE 379
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|617610437|ref|XP_007524944.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Erinaceus europaeus]) HSP 1 Score: 95.1301 bits (235), Expect = 2.563e-19 Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0
Query: 310 LPEDQ-YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
LP+ Q YLCTG D +T EPCVMCAMAL+HSR+RRVFY P P +GAL + F VHA P LNHR++VFR
Sbjct: 112 LPDGQPYLCTGCDVLLTREPCVMCAMALLHSRVRRVFYGAPSP-DGALGTRFRVHAHPDLNHRFQVFR 178
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|213401731|ref|XP_002171638.1| (tRNA specific adenosine deaminase subunit Tad3 [Schizosaccharomyces japonicus yFS275] >gi|211999685|gb|EEB05345.1| tRNA specific adenosine deaminase subunit Tad3 [Schizosaccharomyces japonicus yFS275]) HSP 1 Score: 97.4413 bits (241), Expect = 3.893e-19 Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 244 VLSTSRETSSSLKIDSGLGL-GLGFNVLI---AGERR--GKPSGSVCFQGVHGRNLEEAQARE-DKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVF-RWRGQ 380
VL +R+ SS + + + L + ++ A +R+ G P QG++ ++E + R D + E++YLCT L A M+HEPCVMC+MAL+HSRI R+ YC P P GA++S +G+H LNHRY + W+G+
Sbjct: 158 VLRLARQQESSGNVPCAIAIYDLDNDTILSLQADDRKNSGNPLHHAAIQGINNVAVKERERRMLDHDPK------EERYLCTNLTAVMSHEPCVMCSMALLHSRIHRLIYCSPQPSTGAMQSSYGIHWRTELNHRYLAYSNWKGK 296
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|1177793223|gb|ORC88264.1| (putative deaminase [Trypanosoma theileri]) HSP 1 Score: 97.4413 bits (241), Expect = 9.920e-19 Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0
Query: 312 EDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
E YL +D +++HEPCVMC+MALVHSR+RRVFYC P G L S F +HA+PSLNH +RVFR
Sbjct: 272 EVPYLANNIDLFVSHEPCVMCSMALVHSRVRRVFYCFPNSTHGGLGSIFTIHAIPSLNHHFRVFR 336
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|847006458|ref|XP_004673376.2| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Jaculus jaculus]) HSP 1 Score: 97.0561 bits (240), Expect = 1.196e-18 Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 0
Query: 280 SGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
+ + QG H ++ + A ED++ LP Y+CTG D Y+T EPC+MCAMALVHSRI+RVFY P P +GAL + F +HA P LNHR++VFR
Sbjct: 251 TPATVLQGAHVGSVRKLDAVEDEDG-----LP---YVCTGYDLYVTREPCIMCAMALVHSRIQRVFYGAPSP-DGALGTRFRIHAQPDLNHRFQVFR 338 The following BLAST results are available for this feature:
BLAST of EWM20962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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