EWM20962.1, cds9712 (CDS) Nannochloropsis gaditana

Overview
NameEWM20962.1
Unique Namecds9712
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:6455..6523 -
Alignment locationKK037256.1:6242..6343 -
Alignment locationKK037256.1:5762..6024 -
Alignment locationKK037256.1:5539..5593 -
Alignment locationKK037256.1:4296..5060 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20962.1
Producttrna-specific adenosine deaminase-like protein 3
Orig transcript idgnl|cribi|Naga_100781g2.6052.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:6455..6523 -
KK037256.1supercontigKK037256.1:6242..6343 -
KK037256.1supercontigKK037256.1:5762..6024 -
KK037256.1supercontigKK037256.1:5539..5593 -
KK037256.1supercontigKK037256.1:4296..5060 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|585100934|gb|EWM20962.1| (trna-specific adenosine deaminase-like protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0
Query:    1 MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK 417
            MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK
Sbjct:    1 MVAESENDMAEMEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEGQPFPSQGGRGEGGSEEDWARSDVPVDDIELKVK 417          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|553182526|ref|XP_005853743.1| (trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526] >gi|422295318|gb|EKU22617.1| trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 276.944 bits (707), Expect = 8.966e-90
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0
Query:  232 GRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS 367
            GRELAGGAPGLSVLS SRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRG+LPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS
Sbjct:    1 GRELAGGAPGLSVLSISRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGSLPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPS 136          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|298715154|emb|CBJ27842.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 121.709 bits (304), Expect = 1.878e-27
Identity = 116/372 (31.18%), Postives = 157/372 (42.20%), Query Frame = 0
Query:   28 VEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVR--KDPDSSSLL-LLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQ--GIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGG-------------------REGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVF 375
            ++VLVS I P  A++ +K L  LLP   A+L HLKR+R  + P++  LL +LLS P  YHAL  + R  + +   L   V  VP+   +TR +       WP+ +     EE     +   ++D        D +GF       MR      D +  AE G    R + GG+                          RE   V  +E    ++       +   +  GR LA G+    V     E S+  K+                ER GK S S+C                D        L  +QYLCTG D Y+T EPC+MCAMALVHSR+RRV Y +   E G L S   +H L SLNH YRVF
Sbjct:   19 LDVLVSAIKPRQASQVVKDLSELLPLERAKLNHLKRIRSSQHPETGRLLQVLLSPPDMYHALDEAKRKEIVERYGLEPTVHAVPKLEPRTRAQFLSGGSAWPMIFHHSTSEEARRAARVIPEQD------ALDAIGF-------MR------DALVDAETG----RQQNGGRPTVGAVLVDPLGGCGGRRGRVVATASRERQKVRDEEPASMRDHPLHHAVMLCVQGVGRALAAGSRQEKVARKQEEDSAGGKL--------------GKEREGKGSESLCSDA-------------DPPGGVVEVLSPEQYLCTGFDLYVTREPCLMCAMALVHSRVRRVIYGVRDTERGCLGSVTMLHTLTSLNHNYRVF 340          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|1183504429|gb|ORZ28012.1| (cytidine deaminase-like protein [Lobosporangium transversale])

HSP 1 Score: 110.923 bits (276), Expect = 3.418e-23
Identity = 110/403 (27.30%), Postives = 162/403 (40.20%), Query Frame = 0
Query:   27 TVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSL---LLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTY-QGIE---EVVEKEKAALDRD-RKGKEVFADCLGFG-----------------------------WRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREG-GREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFN--VLIAGERRGKPSGSVCFQGV-----HGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQEEEG 384
            T  V ++ I P   N  LK +   LP P   L HLK++RK  ++  +   ++L    A   A   +L    E   ++   +  VP+ P  TR++ E     WP+++ + I    EV + E   + R  R   E+  D +  G                                H VM C+++VA    SA +     +   G   G  +   RE   V   + KE  +                             T  + + S+ + S L  G       L AG+   + + SV    V      G+ +      E K+       P+  YLCTG D Y+THEPCVMC+MALVHSRI RVFY +P    G L S + +H+ PSLNH + V+R  G E  G
Sbjct:   16 TENVYIATIEPKQTNNVLKFIRGQLP-PTKDLDHLKQIRKLTENGVVKLDIVLCQESAITLADLETLLTTFELAENVRPRIHGVPKFPPLTRNQFETWKMAWPISFREDITRHPEVSDAELETIMRHMRYTWELTKDAVSKGELPSVAAIVNPAIQQVLATAYDTRNSTKHILNHAVMNCIEQVASRERSAFEHHMRNKETDGNDDGSMQTQARESSPVCGDKRKEHPD-----------------------------TPTDNTVSVSLSSPLIEGSAHKRLALQAGDTFAEQTQSVATVMVEKEDDQGQEVVVVVESETKDEG-ENTQPKKAYLCTGYDVYLTHEPCVMCSMALVHSRIGRVFYTIPMKGSGGLGSIYKIHSHPSLNHHFFVYRNVGYENLG 387          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|965800462|ref|XP_014949005.1| (PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries musimon] >gi|965938135|ref|XP_004023504.3| PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries])

HSP 1 Score: 102.449 bits (254), Expect = 1.734e-20
Identity = 118/377 (31.30%), Postives = 156/377 (41.38%), Query Frame = 0
Query:   21 ADEEPTTVEVLVSPIAPHL----ANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSS-----LLLLLSTPAR-YHALTPSLRLALEQDLDL----HVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAALDRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMGRYKKGGKGGGREGGREGGWVGCQEGKEEKEKAERGRGVASGRAGGRELAGGAPGLSVLSTSRETSSSLKIDSGLGLGLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKEASWRGA---LPEDQ----YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
            ++++   VE++++  AP L     +R LK + ++ P P AQ  HLKRVR  PD S      +LL L+ PAR   +L     L    D+D        +  VP RP  TR + E A   WP T+                DR+     A CL F  +    M+                 M R     +     G R  G                   V    A GR LA G            T++S  + + +       V I    RG        QG    NL    A     A   G+   L ED+    Y+CTG D Y+T EPC MCAMALVHSR+RRVFY  P P +GAL +HF +HA P LNHR++ FR
Sbjct:   48 SEQQSGAVELVLAYAAPILDKSQTSRLLKEVSAVHPLP-AQ-PHLKRVRPSPDPSCPHSLEILLCLAGPARDSRSLA---ELLPRPDVDTRGLGQPFLVPVPVRPPLTRSQFEEARTHWPTTFH--------------EDRQVTRALAGCL-FSAQERAAMQA---------------HMERAVWAAQQAASRGLRAVG------------------AVVVDPASGRVLATG--------HDCSTATSPLLHAAM-------VCIDLVARG--------QGCGAYNLAPHPACSFAPAVRAGSVRKLDEDEDGLPYVCTGYDLYITREPCTMCAMALVHSRVRRVFYGAPSP-DGALGTHFRLHARPDLNHRFQAFR 347          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|407850447|gb|EKG04840.1| (hypothetical protein TCSYLVIO_004095 [Trypanosoma cruzi])

HSP 1 Score: 100.523 bits (249), Expect = 9.718e-20
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 0
Query:  315 YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRWRGQ---EEEGQPFPSQGGRGEGGSE 399
            YL   +D +++HEPCVMC+MALVHSR+RRVFYC   P  G L S F +HA+PSLNH +RVFR       +E   P  S    G G SE
Sbjct:  292 YLANEIDLFVSHEPCVMCSMALVHSRVRRVFYCFANPTHGGLGSVFSIHAIPSLNHHFRVFRCSASWLCDESNSPPDSSAAPGGGSSE 379          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|617610437|ref|XP_007524944.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Erinaceus europaeus])

HSP 1 Score: 95.1301 bits (235), Expect = 2.563e-19
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0
Query:  310 LPEDQ-YLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
            LP+ Q YLCTG D  +T EPCVMCAMAL+HSR+RRVFY  P P +GAL + F VHA P LNHR++VFR
Sbjct:  112 LPDGQPYLCTGCDVLLTREPCVMCAMALLHSRVRRVFYGAPSP-DGALGTRFRVHAHPDLNHRFQVFR 178          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|213401731|ref|XP_002171638.1| (tRNA specific adenosine deaminase subunit Tad3 [Schizosaccharomyces japonicus yFS275] >gi|211999685|gb|EEB05345.1| tRNA specific adenosine deaminase subunit Tad3 [Schizosaccharomyces japonicus yFS275])

HSP 1 Score: 97.4413 bits (241), Expect = 3.893e-19
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 0
Query:  244 VLSTSRETSSSLKIDSGLGL-GLGFNVLI---AGERR--GKPSGSVCFQGVHGRNLEEAQARE-DKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVF-RWRGQ 380
            VL  +R+  SS  +   + +  L  + ++   A +R+  G P      QG++   ++E + R  D +        E++YLCT L A M+HEPCVMC+MAL+HSRI R+ YC P P  GA++S +G+H    LNHRY  +  W+G+
Sbjct:  158 VLRLARQQESSGNVPCAIAIYDLDNDTILSLQADDRKNSGNPLHHAAIQGINNVAVKERERRMLDHDPK------EERYLCTNLTAVMSHEPCVMCSMALLHSRIHRLIYCSPQPSTGAMQSSYGIHWRTELNHRYLAYSNWKGK 296          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|1177793223|gb|ORC88264.1| (putative deaminase [Trypanosoma theileri])

HSP 1 Score: 97.4413 bits (241), Expect = 9.920e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0
Query:  312 EDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
            E  YL   +D +++HEPCVMC+MALVHSR+RRVFYC P    G L S F +HA+PSLNH +RVFR
Sbjct:  272 EVPYLANNIDLFVSHEPCVMCSMALVHSRVRRVFYCFPNSTHGGLGSIFTIHAIPSLNHHFRVFR 336          
BLAST of EWM20962.1 vs. NCBI_GenBank
Match: gi|847006458|ref|XP_004673376.2| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Jaculus jaculus])

HSP 1 Score: 97.0561 bits (240), Expect = 1.196e-18
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 0
Query:  280 SGSVCFQGVHGRNLEEAQAREDKEASWRGALPEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFR 376
            + +   QG H  ++ +  A ED++      LP   Y+CTG D Y+T EPC+MCAMALVHSRI+RVFY  P P +GAL + F +HA P LNHR++VFR
Sbjct:  251 TPATVLQGAHVGSVRKLDAVEDEDG-----LP---YVCTGYDLYVTREPCIMCAMALVHSRIQRVFYGAPSP-DGALGTRFRIHAQPDLNHRFQVFR 338          
The following BLAST results are available for this feature:
BLAST of EWM20962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100934|gb|EWM20962.1|0.000e+0100.00trna-specific adenosine deaminase-like protein 3 [... [more]
gi|553182526|ref|XP_005853743.1|8.966e-9098.53trna-specific adenosine deaminase subunit tad3, pa... [more]
gi|298715154|emb|CBJ27842.1|1.878e-2731.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|1183504429|gb|ORZ28012.1|3.418e-2327.30cytidine deaminase-like protein [Lobosporangium tr... [more]
gi|965800462|ref|XP_014949005.1|1.734e-2031.30PREDICTED: LOW QUALITY PROTEIN: probable inactive ... [more]
gi|407850447|gb|EKG04840.1|9.718e-2052.27hypothetical protein TCSYLVIO_004095 [Trypanosoma ... [more]
gi|617610437|ref|XP_007524944.1|2.563e-1966.18PREDICTED: probable inactive tRNA-specific adenosi... [more]
gi|213401731|ref|XP_002171638.1|3.893e-1937.24tRNA specific adenosine deaminase subunit Tad3 [Sc... [more]
gi|1177793223|gb|ORC88264.1|9.920e-1961.54putative deaminase [Trypanosoma theileri][more]
gi|847006458|ref|XP_004673376.2|1.196e-1850.52PREDICTED: probable inactive tRNA-specific adenosi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9743rna9743Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications