EWM20975.1, cds9699 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20975.1
Unique Name	cds9699
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037255.1:279452..281026 +
Alignment location	KK037255.1:281160..281234 +
Alignment location	KK037255.1:281402..281455 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20975.1
Product	F-box domain, cyclin-like protein
Orig transcript id	gnl\|cribi\|Naga_100442g4.7160.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:279452..281026 +
KK037255.1	supercontig	KK037255.1:281160..281234 +
KK037255.1	supercontig	KK037255.1:281402..281455 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait
IPR001611	Leu-rich_rpt
IPR001810	F-box_dom
IPR006553	Leu-rich_rpt_Cys-con_subtyp

Homology

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BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|585100961|gb|EWM20975.1| (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1104.74 bits (2856), Expect = 0.000e+0
Identity = 567/567 (100.00%), Postives = 567/567 (100.00%), Query Frame = 0

Query:    1 MGIQHSRTLACPSPAPPLHAPPSSRPPPWESKRFPIAFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADCRLEALNIADCLRIDASFIHMLAAAAAAGGRKRPTQCLPPPPPPPPPPPPPPPPPPPPPPPPPPPLRPSSYSSSLLLLLVPPPLAREPQGFAFVEFYDERDAEYAKRKLDREMLNGRELTVIFAKQQRKRPDDMRARAQRER 567
            MGIQHSRTLACPSPAPPLHAPPSSRPPPWESKRFPIAFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADCRLEALNIADCLRIDASFIHMLAAAAAAGGRKRPTQCLPPPPPPPPPPPPPPPPPPPPPPPPPPPLRPSSYSSSLLLLLVPPPLAREPQGFAFVEFYDERDAEYAKRKLDREMLNGRELTVIFAKQQRKRPDDMRARAQRER
Sbjct:    1 MGIQHSRTLACPSPAPPLHAPPSSRPPPWESKRFPIAFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADCRLEALNIADCLRIDASFIHMLAAAAAAGGRKRPTQCLPPPPPPPPPPPPPPPPPPPPPPPPPPPLRPSSYSSSLLLLLVPPPLAREPQGFAFVEFYDERDAEYAKRKLDREMLNGRELTVIFAKQQRKRPDDMRARAQRER 567

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BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|817215736|ref|XP_012283980.1| (PREDICTED: F-box/LRR-repeat protein 7 [Orussus abietinus] >gi|817215739|ref|XP_012283982.1| PREDICTED: F-box/LRR-repeat protein 7 [Orussus abietinus])

HSP 1 Score: 92.8189 bits (229), Expect = 1.645e-16
Identity = 123/432 (28.47%), Postives = 184/432 (42.59%), Query Frame = 0

Query:   11 CPSPAPPLHAPPSSRPPPWESKR---FPIAFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHS----LSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            C S + P     S +    +SKR     +  L  ++L  IF  L   D  M+ +TC+ L     H  SLW  VEV        Q     L  L R   R  HS    L L GA  + G       + LP +  +S++  L  S  +  A+      +   L+ELDLS C  +  +     +  L+    S       H ++D  + + LSR+    P     L+SL+L    RR AR    ++D S+  I + C +L+ LS+ +  R+TD G+  L       L    +G C  +SD  +L +A HC  LR L+ R C  L+  A  AL    P + AL+L  C     D  D         AL    P   L++++L     + DA L +L A    GLR+++I +C  VT      + + C  C +E  N
Sbjct:   51 CRSSSSPTAFIVSPKQSSQQSKRTHSIGLCQLNDDVLLKIFSWLSTRDRCMLAQTCRRLWEIAWH-PSLWKEVEV-----HYPQNASTALAALAR---RGCHSCIRRLVLEGANGITG-----IFSSLPFSSLTSLV--LRHSKRINDANVTAILDNCVHLKELDLSGCSSVTKAYTRNVILQLQLLDLSDC-----HGVDDSGLMLTLSRM----PH----LVSLYL----RRCAR----ITDASLVAIASYCVTLRQLSVSDCMRVTDFGVRELAARLGPSLRYFSVGKCDQVSDAGLLVVARHCYKLRYLNARGCEALSDSATLALARGCPRMRALDLGKC-----DVGDA-----TLEALSTGCPN--LKKLSLCGCERITDAGLEAL-AYYIRGLRQLNIGECPGVTCVGYRAVKRYCRRCVIEHTN 432

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|923125652|ref|XP_013756294.1| (hypothetical protein AMSG_12055 [Thecamonas trahens ATCC 50062] >gi|906557994|gb|KNC51237.1| hypothetical protein AMSG_12055 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 93.5893 bits (231), Expect = 3.424e-16
Identity = 65/204 (31.86%), Postives = 109/204 (53.43%), Query Frame = 0

Query:  245 LSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHM 446
            ++D ++  +   CP+L +LSL+N + ITDA +  L    P  L++L LG C++++D ++++LA  CP+L  LSL NC  +T  AV AL G  P+L  L+LY C+ IT  A           AL    P   L  + L     + DA +++L+    + L  + +  C  +T+  +V L   C  L +L++ +C  I DA+ + +
Sbjct:   78 ITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVALAGGCP-NLTILLLGNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAV---------VALAGGCPN--LTTLKLYNCSDITDAAVVALAGGCPN-LTSLDLCNCSNITDAAVVALTGGCPNLTSLDLYNCSNITDAAVVAL 268

HSP 2 Score: 91.6633 bits (226), Expect = 1.238e-15
Identity = 62/196 (31.63%), Postives = 106/196 (54.08%), Query Frame = 0

Query:  245 LSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI 439
            ++D ++  +   CP+L SL L+N + ITDA +  L    P  L++L LG C++++D ++++LA  CP+L  LSL NC  +T  AV AL G  P+L +LNL  C+ IT  A           AL    P   L  + L     + DA +++L+    + L  ++++ C  +T+  +V L   C  L +L++ +C ++
Sbjct:  442 ITDAAVVALAGGCPNLTSLKLYNCSNITDAAVVALAGGCP-NLTILLLGNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVALAGGCPNLTSLNLSYCSNITDAAV---------VALAGGCPN--LTSLKLYNCSNITDAAVVALAGGCPN-LTTLNLSNCSDITDAAVVALAGGCPNLTSLDLENCSKV 624

HSP 3 Score: 90.1225 bits (222), Expect = 4.092e-15
Identity = 86/298 (28.86%), Postives = 146/298 (48.99%), Query Frame = 0

Query:  163 SLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVI-----LSRLALPAPSGTT--ALISLHLG--TSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHM 446
            +L  L+L +C  +     + A+ AL     +L SL L N  ++ +   +A+      L+ L L   S  T  A+++L  G    T         ++D ++  +   CP+L +L L+N + ITDA +  L    P  L+ L L  C++++D ++++LA  CP+L  L+L NC  +T  AV AL G  P+L +L LY C+ IT  A           AL    P L +  + L     + DA +++L+    + L  +S+  C  +T+  +V L   C  L +LN++ C  I DA+ + +
Sbjct:  274 NLTTLNLYNCSNIT----DAAVVALAGGCPNLTSLKLYNCSNITDAAVVALAGGCPNLTILLLGNCSDITDAAVVALAGGCPNLTTLYLDNCSNITDAAVVALAGGCPNLTTLYLYNCSNITDAAVVALAGGCP-NLTTLYLSYCSNITDAAVVALAGGCPNLATLNLYNCSNITDAAVVALAGGCPNLTSLKLYNCSNITDAAV---------VALAGGCPNLTI--LLLGNCSNITDAAVVALAGGCPN-LTTLSLYNCSNITDAAVVALAGGCPNLTSLNLSYCSNITDAAVVAL 554

HSP 4 Score: 85.8853 bits (211), Expect = 8.709e-14
Identity = 85/290 (29.31%), Postives = 136/290 (46.90%), Query Frame = 0

Query:  172 CPGLQLSLL-------ERALPALRH---SLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSI---AKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHM 446
            CP L + LL       + A+ AL     +L +LSL N  ++ +   +A     LA   P+ TT  +SL+              ++D ++  +   CP+L +L L+N + ITDA +  L    P  L+ LDL  C++++D ++++L   CP+L  L L NC  +T  AV AL G  P+L  LNLY C+ IT  A           AL    P   L  + L     + DA +++L+     G   ++I     C  +T+  +V L   C  L  L + +C  I DA+ + +
Sbjct:  116 CPNLTILLLGNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVA-----LAGGCPNLTT--LSLY----------NCSNITDAAVVALAGGCPNLTTLKLYNCSDITDAAVVALAGGCP-NLTSLDLCNCSNITDAAVVALTGGCPNLTSLDLYNCSNITDAAVVALAGGCPNLTTLNLYNCSNITDAAV---------VALAGGCPN--LTSLKLYNCSNITDAAVVALAG----GCPNLTILLLGNCSDITDAAVVALAGGCPNLTTLYLDNCSNITDAAVVAL 372

HSP 5 Score: 81.2629 bits (199), Expect = 2.738e-12
Identity = 65/201 (32.34%), Postives = 104/201 (51.74%), Query Frame = 0

Query:  252 VIHAACPSLQSLSLHNQTRITDAGLHHL----LTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHM 446
            V+   CP+L SL+L+N + ITDA +  L    L      L+ LDL  C +++D ++++LA  CP+L  L+L NC  +T  AV AL G  P+L  L+LY C+ IT  A           AL    P L +  + L     + DA +++L+    + L  +S+  C  +T+  +V L   C  L  L++ +C  I DA+ + +
Sbjct:    2 VVVEMCPNLTSLNLNNFSNITDAAVVALPLVALAGGCPNLTSLDLYNCPNITDAAVVALAGGCPNLTSLNLNNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAV---------VALAGGCPNLTI--LLLGNCSNITDAAVVALAGGCPN-LTTLSLYNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVAL 190

HSP 6 Score: 72.0182 bits (175), Expect = 2.013e-9
Identity = 62/203 (30.54%), Postives = 105/203 (51.72%), Query Frame = 0

Query:  163 SLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVI-----LSRLALPAPSGTT--ALISLHLG--TSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPD 353
            +L  L+L +C  +     + A+ AL     +L SL L N  ++ +   +A+      L+ L L   S  T  A+++L  G    T  +      ++D ++  +   CP+L SL+L   + ITDA +  L    P  L+ L L  C++++D ++++LA  CP+L  L+L NC  +T  AV AL G  P+L +L+L  C+ +T D
Sbjct:  430 NLATLNLYNCSNIT----DAAVVALAGGCPNLTSLKLYNCSNITDAAVVALAGGCPNLTILLLGNCSNITDAAVVALAGGCPNLTTLSLYNCSNITDAAVVALAGGCPNLTSLNLSYCSNITDAAVVALAGGCP-NLTSLKLYNCSNITDAAVVALAGGCPNLTTLNLSNCSDITDAAVVALAGGCPNLTSLDLENCSKVTLD 627

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|923118692|ref|XP_013752821.1| (leucine Rich Repeat family protein [Thecamonas trahens ATCC 50062] >gi|906562601|gb|KNC55844.1| leucine Rich Repeat family protein [Thecamonas trahens ATCC 50062])

HSP 1 Score: 92.0485 bits (227), Expect = 9.737e-16
Identity = 95/311 (30.55%), Postives = 147/311 (47.27%), Query Frame = 0

Query:  159 PSLTSLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVI-----LSRLALPAPSGTT--ALISLHLG--TSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHMLAAAAAAGG 455
            P+LT+L  L LS C  +     + A+ AL     +L SL L N   + +   IA+      L+ L L   S  T  A+I+L  G    T         ++D ++  +   CP+L SL L N + ITDA +  L    P  L+ LDL  C+ ++D ++++LA  CP+L  L L NC  +T  AV AL G  P+L +L L +C+ IT  A           AL    P   L  + LS    + DA +++L+    + L  + +  C  +T+  ++ L   C  L +L ++ C  I DA+ I +      AGG
Sbjct:  211 PNLTTLYFLKLSSCSDIT----DAAVIALAGGCPNLTSLYLENCSDITDAAVIALAGGCPNLTTLDLNNCSDITDAAVIALAGGCPNLTTLYLSSCSNITDAAVIALTGGCPNLTSLYLENCSDITDAAVVALADGCP-NLTTLDLNNCSDITDAAVVALAGGCPNLTTLDLNNCSNITDAAVVALAGGCPNLTSLKLSSCSDITDAAV---------IALAGGCPN--LTTLYLSSCSNITDAAVIALTGGCPN-LTTLDLNNCSNITDAAVIALAGGCPNLTSLKLSSCSDITDAAVIAL------AGG 498

HSP 2 Score: 87.0409 bits (214), Expect = 3.956e-14
Identity = 90/308 (29.22%), Postives = 146/308 (47.40%), Query Frame = 0

Query:  163 SLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVI-----LSRLALPAPSGTT--ALISLHLG--TSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRL-ALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHMLAAAAAAGG 455
            +L  LDL++C  +     + A+ AL     +L SL L N   + +   +A+      L+ L L   S  T  A+I+L  G    T         ++D ++  +   CP+L +L L + + ITDA +  L    P  L+ L L  C++++D ++++LA  CP+L  L L +C  +T  AV AL G  P+L  LNLY C+ IT  A           AL    P L  L  + LS    + DA +++L+    + L  + +  C  +T+  ++ L   C  L  L++ +C  I DA+ I +      AGG
Sbjct:    4 NLTTLDLNNCSNIT----DAAVIALAGGCPNLTSLYLENCSDITDAAVVALAGGCPNLTSLYLENCSDITDAAVIALAGGCPNLTTLDLNNCSDITDAAVVALAGGCPNLTTLYLSSCSNITDAAVVALAGGCP-NLTTLYLSYCSNITDAAVVALAGGCPNLTTLYLSSCSNITDAAVIALAGGCPNLTTLNLYNCSNITDAAV---------IALADGCPNLTTLYFLKLSSCSDITDAAVIALAGGCPN-LTSLYLENCSDITDAAVIALAGGCPNLTTLDLNNCSDITDAAVIAL------AGG 290

HSP 3 Score: 80.8777 bits (198), Expect = 3.492e-12
Identity = 85/298 (28.52%), Postives = 142/298 (47.65%), Query Frame = 0

Query:  163 SLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHMLAAAAAAGG 455
            +L  LDL++C  +     + A+ AL     +L +L L N  ++   DA  V L+        G   L SL L + +         ++D ++  +   CP+L +L L + + ITDA +  L    P  L+ LDL  C++++D ++++LA  CP+L  L L +C  +T  AV AL G  P+L  L L +C+ IT  A           AL    P   L  ++L+    + DA +++L+    + L  + +  C  +T+  +V L   C  L +L ++ C  I DA+ I +      AGG
Sbjct:  345 NLTTLDLNNCSDIT----DAAVVALAGGCPNLTTLDLNNCSNIT--DAAVVALA-------GGCPNLTSLKLSSCSD--------ITDAAVIALAGGCPNLTTLYLSSCSNITDAAVIALTGGCP-NLTTLDLNNCSNITDAAVIALAGGCPNLTSLKLSSCSDITDAAVIALAGGCPNLTTLYLSSCSNITDAAV---------VALTGGCPN--LTTLDLNNCSNITDAAVVALADGCPN-LTSLYLENCSNITDAAVVALADGCPNLTSLKLSSCSDITDAAVIAL------AGG 602

HSP 4 Score: 76.6406 bits (187), Expect = 6.858e-11
Identity = 63/207 (30.43%), Postives = 100/207 (48.31%), Query Frame = 0

Query:  257 CPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDA----------FDPRRFPFLPPALPPALPRLA-----LQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADC-RLEALNIADCLRI-DASFIHM 446
            CP+L +L L+N + ITDA +  L    P  L+ L L  C+ ++D ++++LA  CP+L  L L NC  +T  AV AL G  P+L  L+L  C+ IT  A                         A+  LA     L  + LSY   + DA +++L+    + L  + ++ C  +T+  ++ L   C  L  LN+ +C  I DA+ I +
Sbjct:    2 CPNLTTLDLNNCSNITDAAVIALAGGCP-NLTSLYLENCSDITDAAVVALAGGCPNLTSLYLENCSDITDAAVIALAGGCPNLTTLDLNNCSDITDAAVVALAGGCPNLTTLYLSSCSNITDAAVVALAGGCPNLTTLYLSYCSNITDAAVVALAGGCPN-LTTLYLSSCSNITDAAVIALAGGCPNLTTLNLYNCSNITDAAVIAL 206

HSP 5 Score: 75.8702 bits (185), Expect = 1.066e-10
Identity = 79/261 (30.27%), Postives = 119/261 (45.59%), Query Frame = 0

Query:  140 LSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSA 397
            LSS S        + A   P+LT+L    LS C  +     + A+ AL     +L +L L N  ++   DA  V L+        G   L SL+L             ++D ++  +   CP+L SL L + + ITDA +  L    P  L+ LDL  C+ ++D ++++LA  CP+L  L L NC  +T  AV AL G  P+L +L L  C+ IT  A           AL    P   L  + LS    + DA +++L+ 
Sbjct:  481 LSSCSDITDAAVIALAGGCPNLTTLY---LSSCSNIT----DAAVVALTGGCPNLTTLDLNNCSNIT--DAAVVALAD-------GCPNLTSLYL--------ENCSNITDAAVVALADGCPNLTSLKLSSCSDITDAAVIALAGGCP-NLTTLDLNNCSDITDAAVIALAGGCPNLTSLYLNNCSNITDAAVIALAGGCPNLTSLYLNNCSNITDAAV---------VALAGGCPN--LTSLKLSSCSNITDAAVVALAG 705

HSP 6 Score: 75.485 bits (184), Expect = 1.442e-10
Identity = 68/223 (30.49%), Postives = 111/223 (49.78%), Query Frame = 0

Query:  143 LSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRH---SLRSLSLRNTDHLLNDDAIAVI-----LSRLALPAPSGTT--ALISLHLG--TSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPD 353
            LSS  ++  A+         +L  LDL++C  +     + A+ AL     +L SL L N  ++ +   +A+      L+ L L + S  T  A+I+L  G    T         ++D ++  +   CP+L SL L+N + ITDA +  L    P  L+ L L  C++++D ++++LA  CP+L  L L +C  +T  AV AL G  P+L  L L  C+ +T D
Sbjct:  507 LSSCSNITDAAVVALTGGCPNLTTLDLNNCSNIT----DAAVVALADGCPNLTSLYLENCSNITDAAVVALADGCPNLTSLKLSSCSDITDAAVIALAGGCPNLTTLDLNNCSDITDAAVIALAGGCPNLTSLYLNNCSNITDAAVIALAGGCP-NLTSLYLNNCSNITDAAVVALAGGCPNLTSLKLSSCSNITDAAVVALAGGCPNLTTLILDYCSKVTLD 724

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|1032647060|gb|OAQ28363.1| (RNI-like protein [Mortierella elongata AG-77])

HSP 1 Score: 87.4261 bits (215), Expect = 2.417e-14
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 0

Query:  257 CPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTH--HGLREVSIAKCDTVTNEVLVQLC-ADCRLEALNIADCLR---IDASFIHMLA 448
            CP L SL L +   +TDA + ++    P  L  L +G C+SL+D SI+ LA  CP L+R+ L  C  LT  +V AL    PHL+ ++L  C  +T DA     F FLP           +++IN++ +  L +A   S+S  TH    LR ++   C  +T+E L+++  A  RL +L +  C +   I AS I  L 
Sbjct:  270 CPGLYSLDLSDIPAVTDALIEYVAEKCP-RLHTLYVGNCSSLTDDSIVKLATFCPQLKRIKLSQCSLLTDRSVLALTEHCPHLIEIDLTNCNLMT-DAAIHSIFEFLPQ----------IRDINMTLLTHLTNAAFSSISPKTHRFEQLRVLNFTSCANITDETLLKIIPAAPRLRSLALTKCDKITDIGASVIKTLG 455

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|1000737675|ref|XP_015591362.1| (PREDICTED: F-box/LRR-repeat protein 7 [Cephus cinctus])

HSP 1 Score: 85.5001 bits (210), Expect = 3.646e-14
Identity = 126/435 (28.97%), Postives = 187/435 (42.99%), Query Frame = 0

Query:   10 ACPSPAPPLHAPPSSRPP-PWESKRFPI---AFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSS-----SPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            AC S + P     S +   P + KR  I     L  EIL  IF  L   D   + +TC  L     H  SLW  VE+     R  Q     L  L R   R  HS        +R   ++   T +P+ ++S   SSL++     S  +   S A    + + L+ELDL+ C  +  +    A       L+SL L +  H ++D  + + LSR+    P     L  L+L    RR AR    ++D S+  I   C +L+ LS+ +  R+TD G+  L       L  L +G C  +SD  +L +A HC  LR L+ R C  ++  A  AL    P + AL+L  C     D  D         AL    P   L++++L     + DA L +L A    GLR+++I +C  VT      + + C  C +E  N
Sbjct:   50 ACHSASSPTVVTVSVKQQLPQQQKRIYIPGLCQLDDEILIKIFGWLGTRDRCALAQTCHRLWEIAWH-PSLWKEVEI-----RYPQNASAALNALTR---RGCHS-------CIR-RLVLESSTGVPNVLASLPFSSLTTLVLRHSRRVTDDSVAAILNNCSHLKELDLTGCSEVTRAYCRIATL----QLQSLDLSDC-HSVDDSGLILTLSRM----PH----LACLYL----RRCAR----ITDTSLVAIALYCTTLRQLSVSDCVRVTDYGVRELAAHLGPSLRYLSVGKCDRVSDAGLLVVARHCYKLRYLNARGCEAVSDSATLALARGCPRMRALDLGKC-----DVGDA-----TLEALSTGCPN--LKKLSLCGCDRITDAGLEAL-AYYVRGLRQLNIGECPRVTCVGYRAVKRYCRRCVIEHTN 433

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|749756702|ref|XP_011140841.1| (PREDICTED: F-box/LRR-repeat protein 7 [Harpegnathos saltator] >gi|749756706|ref|XP_011140842.1| PREDICTED: F-box/LRR-repeat protein 7 [Harpegnathos saltator] >gi|749756710|ref|XP_011140843.1| PREDICTED: F-box/LRR-repeat protein 7 [Harpegnathos saltator] >gi|307205255|gb|EFN83635.1| F-box/LRR-repeat protein 7 [Harpegnathos saltator])

HSP 1 Score: 83.1889 bits (204), Expect = 2.264e-13
Identity = 114/399 (28.57%), Postives = 172/399 (43.11%), Query Frame = 0

Query:   39 LPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRD-VHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGT-STRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            L   +L  IF  L   D   + +TC+ L     H A LW  VEV     R  Q     L  L R+     +  L L GA  + G         LP    +S++  L  S  +  A+      S T LRELDL+ CP +  +   RA  +L+  L+SL L +  H + D  + + LSR+              HLG    RR  R    ++D S+  I + C +L+ LS+ +  ++TD G+  L       L    +G C  +SD  +L +A HC  LR L+ R C  L+  A  AL  + P + AL++  C     DA           AL    P   L++++L     + D  L +L+     GLR+++I +C  VT      + + C  C +E  N
Sbjct:  103 LDDNLLLKIFSWLGTRDRCTLAQTCRRLWEIAWHPA-LWREVEV-----RYPQNATTALNALTRRGCHTCIRRLILEGAVGLPG-----IFVQLPFLNLTSLI--LRHSRRVNDANVTTVLDSCTHLRELDLTGCPNVTHAC-GRATSSLQ--LQSLDLSDC-HGIEDSGLVLSLSRMP-------------HLGCLYLRRCVR----ITDASLVAIASYCANLRQLSVSDCVKVTDYGVRELAARLGPSLRYFSVGKCDRVSDAGLLIVARHCYKLRYLNARGCEALSDSATVALARSCPRMRALDIGKCDI--GDA--------TLEALSTGCPN--LKKLSLCGCERVTDTGLEALAYYV-RGLRQLNIGECPRVTWVGYRAVKRYCRRCIIEHTN 454

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|322799157|gb|EFZ20596.1| (hypothetical protein SINV_10543, partial [Solenopsis invicta])

HSP 1 Score: 83.1889 bits (204), Expect = 2.745e-13
Identity = 114/399 (28.57%), Postives = 168/399 (42.11%), Query Frame = 0

Query:   39 LPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRD-VHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGT-STRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            L   +L  IF  L   D   + +TC+ L     H A LW  VEV     R  Q     L  L R+     V  L L GA  + G         LP    +S++  L  S  +  A+      S T LRELDL+ CP +  +     +      L++L L +  H + D  + + LSR+              HLG    RR  R    ++D S+  I + C SL+ LS+ +  ++TD G+  L       L    +G C  +SD  +L +A HC  LR L+ R C  L+  A  AL    P + AL++  C     D  D         AL    P   L++++L     + DA L +L A    GLR+++I +C  VT      + + C  C +E  N
Sbjct:  105 LDDSLLLKIFSWLDTRDRCSLAQTCRRLWEIAWHPA-LWREVEV-----RYPQNATAALNALTRRGCHTCVRRLVLEGATGLPG-----IFAQLPYLNLTSLV--LRHSRRVTDANVTTVLDSCTHLRELDLTGCPNITRTCGRTTIL----QLQTLDLSDC-HGVEDSGLVLSLSRMP-------------HLGCLYLRRCGR----ITDTSLIAIASYCGSLRQLSVSDCLKVTDFGVRELAARLGPSLRYFSVGKCDRVSDAGLLVVARHCYKLRYLNARGCEALSDSATIALARGCPRMRALDIGKC-----DIGDA-----TLEALSTGCPN--LKKLSLCGCERITDAGLEAL-AYYVRGLRQLNIGECSRVTWVGYRAVKRYCRRCVIEHTN 455

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|751206484|ref|XP_011155765.1| (PREDICTED: F-box/LRR-repeat protein 7 [Solenopsis invicta])

HSP 1 Score: 82.4185 bits (202), Expect = 4.196e-13
Identity = 114/399 (28.57%), Postives = 168/399 (42.11%), Query Frame = 0

Query:   39 LPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRD-VHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGT-STRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            L   +L  IF  L   D   + +TC+ L     H A LW  VEV     R  Q     L  L R+     V  L L GA  + G         LP    +S++  L  S  +  A+      S T LRELDL+ CP +  +     +      L++L L +  H + D  + + LSR+              HLG    RR  R    ++D S+  I + C SL+ LS+ +  ++TD G+  L       L    +G C  +SD  +L +A HC  LR L+ R C  L+  A  AL    P + AL++  C     D  D         AL    P   L++++L     + DA L +L A    GLR+++I +C  VT      + + C  C +E  N
Sbjct:  106 LDDSLLLKIFSWLDTRDRCSLAQTCRRLWEIAWHPA-LWREVEV-----RYPQNATAALNALTRRGCHTCVRRLVLEGATGLPG-----IFAQLPYLNLTSLV--LRHSRRVTDANVTTVLDSCTHLRELDLTGCPNITRTCGRTTIL----QLQTLDLSDC-HGVEDSGLVLSLSRMP-------------HLGCLYLRRCGR----ITDTSLIAIASYCGSLRQLSVSDCLKVTDFGVRELAARLGPSLRYFSVGKCDRVSDAGLLVVARHCYKLRYLNARGCEALSDSATIALARGCPRMRALDIGKC-----DIGDA-----TLEALSTGCPN--LKKLSLCGCERITDAGLEAL-AYYVRGLRQLNIGECSRVTWVGYRAVKRYCRRCVIEHTN 456

[Close]

BLAST of EWM20975.1 vs. NCBI_GenBank
Match: gi|780690446|ref|XP_011699497.1| (PREDICTED: F-box/LRR-repeat protein 7 isoform X2 [Wasmannia auropunctata])

HSP 1 Score: 81.2629 bits (199), Expect = 1.098e-12
Identity = 113/399 (28.32%), Postives = 167/399 (41.85%), Query Frame = 0

Query:   39 LPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRD-VHSLSLLGARAVRGDCLMAFGTPLPSAVSSSILSSLSSSPSLGPASPAVSPPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPAPSGTTALISLHLGT-STRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLTPTPLPLSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLPPALPPALPRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVT---NEVLVQLCADCRLEALN 432
            L   +L  IF  L   D   + +TC+ L     H  +LW  VEV     R  Q     L  L R+     V  L L GA  + G         LP    +S++  L  S  +  A+      S   LRELDL+ CP +  +     +      L+SL L +  H + D  + + LSR+              HLG    RR  R    ++D S+  I + C SL+ LS+ +  ++TD G+  L       L    +G C  +SD  +L +A HC  LR L+ R C  L+  A  AL    P + AL++  C     D  D         AL    P   L++++L     + DA L +L A    GLR+++I +C  VT      + + C  C +E  N
Sbjct:  100 LDDNLLLRIFSWLDTRDRCSLAQTCRRLWEIAWH-PTLWREVEV-----RYPQNATAALNALTRRGCHTCVRRLVLEGATGLPG-----IFAQLPYLNLTSLV--LRHSRRVTDANVTTVLDSCAHLRELDLTGCPNVTRACGRTTIL----QLQSLDLSDC-HCVEDSGLVLSLSRMP-------------HLGCLYLRRCGR----ITDTSLIAIASYCASLRQLSVSDCVKVTDFGVRELAARLGPSLRYFSVGKCDRVSDAGLLVVARHCYKLRYLNARGCEALSDSATIALARGCPRMRALDIGKC-----DIGDA-----TLEALSTGCPN--LKKLSLCGCERITDAGLEAL-AYYVRGLRQLNIGECPRVTWVGYRAVKRYCRRCVIEHTN 450

The following BLAST results are available for this feature:

BLAST of EWM20975.1 vs. NCBI_GenBank

BLAST of EWM20975.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585100961\|gb\|EWM20975.1\|	0.000e+0	100.00	F-box domain, cyclin-like protein [Nannochloropsis...	[more]
gi\|817215736\|ref\|XP_012283980.1\|	1.645e-16	28.47	PREDICTED: F-box/LRR-repeat protein 7 [Orussus abi...	[more]
gi\|923125652\|ref\|XP_013756294.1\|	3.424e-16	31.86	hypothetical protein AMSG_12055 [Thecamonas trahen...	[more]
gi\|923118692\|ref\|XP_013752821.1\|	9.737e-16	30.55	leucine Rich Repeat family protein [Thecamonas tra...	[more]
gi\|1032647060\|gb\|OAQ28363.1\|	2.417e-14	34.34	RNI-like protein [Mortierella elongata AG-77]	[more]
gi\|1000737675\|ref\|XP_015591362.1\|	3.646e-14	28.97	PREDICTED: F-box/LRR-repeat protein 7 [Cephus cinc...	[more]
gi\|749756702\|ref\|XP_011140841.1\|	2.264e-13	28.57	PREDICTED: F-box/LRR-repeat protein 7 [Harpegnatho...	[more]
gi\|322799157\|gb\|EFZ20596.1\|	2.745e-13	28.57	hypothetical protein SINV_10543, partial [Solenops...	[more]
gi\|751206484\|ref\|XP_011155765.1\|	4.196e-13	28.57	PREDICTED: F-box/LRR-repeat protein 7 [Solenopsis ...	[more]
gi\|780690446\|ref\|XP_011699497.1\|	1.098e-12	28.32	PREDICTED: F-box/LRR-repeat protein 7 isoform X2 [...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9730	rna9730	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications