EWM20977.1, cds9697 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20977.1 vs. NCBI_GenBank
Match: gi|585100963|gb|EWM20977.1| (Protein of unknown function DUF408 [Nannochloropsis gaditana]) HSP 1 Score: 1172.92 bits (3033), Expect = 0.000e+0 Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0
Query: 1 MDRLGPAKWCGRQSILVTYKEQKRKGADKKSGKDDVRVRACALPFRPSMAGLPTSTARAPQQRQPKRGLQGPETELIDAKLLEMQFKLLSTNEPVTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGSGASGVKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRPVARAYLAQKRAQAAGQELVTPSPSYVYDLVAKRHEARGNPVDKNGMDRKANKAMACEEKNEEGPGPPGVPVPPPGQPRGPPGLGTGHEGCDSEKMELGGKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVEGHAVSDMLSGTQKERRRVEEGRPRDGEGQEGEEKEEESVSMGRGDGEDADEAFGAPVGHLRSLVREAPAMVAGDFFLQLWSTLSSWVSPASHQYVALLASNGGDENAALRTVHGNPTDPLQVQRALLDVQQRERALGGMLAHHVTGAMEIMGLTKALAPSTGTHRLQGLLSTFDLYRPLPSFLSSAHYTAMALLFMEVLFQGELTELEGEEDEQEQRERLKESVLQKLKLSTAEYASLKRDLEISP 574
MDRLGPAKWCGRQSILVTYKEQKRKGADKKSGKDDVRVRACALPFRPSMAGLPTSTARAPQQRQPKRGLQGPETELIDAKLLEMQFKLLSTNEPVTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGSGASGVKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRPVARAYLAQKRAQAAGQELVTPSPSYVYDLVAKRHEARGNPVDKNGMDRKANKAMACEEKNEEGPGPPGVPVPPPGQPRGPPGLGTGHEGCDSEKMELGGKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVEGHAVSDMLSGTQKERRRVEEGRPRDGEGQEGEEKEEESVSMGRGDGEDADEAFGAPVGHLRSLVREAPAMVAGDFFLQLWSTLSSWVSPASHQYVALLASNGGDENAALRTVHGNPTDPLQVQRALLDVQQRERALGGMLAHHVTGAMEIMGLTKALAPSTGTHRLQGLLSTFDLYRPLPSFLSSAHYTAMALLFMEVLFQGELTELEGEEDEQEQRERLKESVLQKLKLSTAEYASLKRDLEISP
Sbjct: 1 MDRLGPAKWCGRQSILVTYKEQKRKGADKKSGKDDVRVRACALPFRPSMAGLPTSTARAPQQRQPKRGLQGPETELIDAKLLEMQFKLLSTNEPVTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGSGASGVKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRPVARAYLAQKRAQAAGQELVTPSPSYVYDLVAKRHEARGNPVDKNGMDRKANKAMACEEKNEEGPGPPGVPVPPPGQPRGPPGLGTGHEGCDSEKMELGGKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVEGHAVSDMLSGTQKERRRVEEGRPRDGEGQEGEEKEEESVSMGRGDGEDADEAFGAPVGHLRSLVREAPAMVAGDFFLQLWSTLSSWVSPASHQYVALLASNGGDENAALRTVHGNPTDPLQVQRALLDVQQRERALGGMLAHHVTGAMEIMGLTKALAPSTGTHRLQGLLSTFDLYRPLPSFLSSAHYTAMALLFMEVLFQGELTELEGEEDEQEQRERLKESVLQKLKLSTAEYASLKRDLEISP 574
BLAST of EWM20977.1 vs. NCBI_GenBank
Match: gi|1199386661|ref|XP_021188106.1| (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 [Helicoverpa armigera]) HSP 1 Score: 70.0922 bits (170), Expect = 6.158e-9 Identity = 72/272 (26.47%), Postives = 105/272 (38.60%), Query Frame = 0
Query: 95 VTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGSGASGVKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRP--------------------------VARAYLAQKRA--------QAAGQELVTPSPSYVYDLVAKRHEARGNPVDK---NGMDRKANKAMACEEKNE-EGPGPPGVPVPPPGQPRGPPGLGTGHEGCDSEKMELGGKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVE 328
VTE L C P HF ++EE + CG+P+C+KTL + + R+ +K KV DIT FCS+ C AA Q+ T + FR V R +A K+A +A+ E+ + ++ + EA N DK + D+ AN + CE KN P PV T HE +SE + + P K ++E AP PL++ GDI+E
Sbjct: 49 VTESFLLQCLPDINQTHFDDIIEERSIIHLCGYPICQKTL-------SVKDIPKQKYRISLKTNKVYDITG-RKNFCSNSCYNAAMFVKKQMLTSPLWFREYENIPTFHLLKLDAVGSMGEEVDVTMVERVKIADKKAFTSINDFTEASLNEISPKQENNKTKSISDKSEADQNEEDKAMQSVNDKLANITLECEIKNSTTDPNATAEPVQSTND-----NTNTTHET-NSENSNITN--TQVPEAEKTPKKEVKPAPNPLNIV---GDIIE 301 The following BLAST results are available for this feature:
BLAST of EWM20977.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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