EWM20986.1, cds9689 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|585100981|gb|EWM20986.1| (splicing arginine serine-rich 2 [Nannochloropsis gaditana]) HSP 1 Score: 353.599 bits (906), Expect = 5.795e-123 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD 185
MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD
Sbjct: 1 MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD 185
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|194761376|ref|XP_001962905.1| (uncharacterized protein Dana_GF15672 [Drosophila ananassae] >gi|190616602|gb|EDV32126.1| uncharacterized protein Dana_GF15672 [Drosophila ananassae]) HSP 1 Score: 114.39 bits (285), Expect = 1.331e-28 Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 0
Query: 13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
+GGG G R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 3 NGGGLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 101
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|929355526|ref|XP_014086923.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera oleae]) HSP 1 Score: 113.62 bits (283), Expect = 2.133e-28 Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query: 14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
GGG R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|751801113|ref|XP_011210585.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera dorsalis]) HSP 1 Score: 113.62 bits (283), Expect = 2.216e-28 Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
GGG R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 2 SGGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1098676648|ref|XP_018798400.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera latifrons]) HSP 1 Score: 113.235 bits (282), Expect = 2.562e-28 Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query: 14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
GGG R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|498942705|ref|XP_004521759.1| (serine/arginine-rich splicing factor 2 [Ceratitis capitata]) HSP 1 Score: 113.235 bits (282), Expect = 2.733e-28 Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query: 14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
GGG R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1048007377|ref|XP_017464155.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Rhagoletis zephyria] >gi|1048007379|ref|XP_017464161.1| PREDICTED: serine/arginine-rich splicing factor 2 [Rhagoletis zephyria]) HSP 1 Score: 113.235 bits (282), Expect = 2.930e-28 Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 0
Query: 13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDH 113
GGG R PP+I+GM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP+
Sbjct: 2 SGGGNNAARPPPRIEGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRPNS 102
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1036992947|ref|XP_017099830.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Drosophila bipectinata]) HSP 1 Score: 112.849 bits (281), Expect = 4.893e-28 Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 0
Query: 13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVA 106
+GGG G R PP+IDGM +LK+DN+ Y T EDLR +F+ GE+GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A
Sbjct: 3 NGGGLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMA 96
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|221117570|ref|XP_002161458.1| (PREDICTED: serine/arginine-rich splicing factor 2-like isoform X1 [Hydra vulgaris]) HSP 1 Score: 111.309 bits (277), Expect = 1.788e-27 Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0
Query: 19 GGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDH 113
G RGPP+I+GM +LK+DN+ Y + EDL FK GE+GD+YIPRD N+ ++RGFAFVRY+E+ DAE A++ +DG GR++RV++A RP +
Sbjct: 7 GSRGPPQIEGMVSLKVDNLTYRTSMEDLERYFKKYGELGDIYIPRDRNTHESRGFAFVRYYEERDAEDAMDSMDGKVIDGREIRVAMARYGRPSN 101
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|907631062|ref|XP_013098882.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Stomoxys calcitrans] >gi|907631065|ref|XP_013098883.1| PREDICTED: serine/arginine-rich splicing factor 2 [Stomoxys calcitrans]) HSP 1 Score: 110.923 bits (276), Expect = 4.194e-27 Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 0
Query: 19 GGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
GGR PP+IDGM +LK+DN+ Y T EDLR +F+ G++GD+YIPRD + ++RGFAFVR+++K DAE ALE +DG GR+LRV +A RP
Sbjct: 13 GGRPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRP 105 The following BLAST results are available for this feature:
BLAST of EWM20986.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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