EWM20987.1, cds9686 (CDS) Nannochloropsis gaditana

Overview
NameEWM20987.1
Unique Namecds9686
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:239919..240396 +
Alignment locationKK037255.1:240619..241271 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20987.1
ProductSNARE associated Golgi protein
Orig transcript idgnl|cribi|Naga_100211g9.3041.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:239919..240396 +
KK037255.1supercontigKK037255.1:240619..241271 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|585100983|gb|EWM20987.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MATDGPSFLEGSEAEEGKKGQYQAMDGLNRPLTPTESAACALQKEKSDGSLALSSASSASAIPPSLPYLVSAASSSLLSPARSRIWLLCPVLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGEEEGAEEGGERLGLLAEKGGGRGKGGGRGVYGVGGGG 376
            MATDGPSFLEGSEAEEGKKGQYQAMDGLNRPLTPTESAACALQKEKSDGSLALSSASSASAIPPSLPYLVSAASSSLLSPARSRIWLLCPVLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGEEEGAEEGGERLGLLAEKGGGRGKGGGRGVYGVGGGG
Sbjct:    1 MATDGPSFLEGSEAEEGKKGQYQAMDGLNRPLTPTESAACALQKEKSDGSLALSSASSASAIPPSLPYLVSAASSSLLSPARSRIWLLCPVLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGEEEGAEEGGERLGLLAEKGGGRGKGGGRGVYGVGGGG 376          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|585108346|gb|EWM26339.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 208.764 bits (530), Expect = 9.498e-59
Identity = 134/326 (41.10%), Postives = 183/326 (56.13%), Query Frame = 0
Query:   91 VLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGL-----------------------------LLPPVRPPA---PSAPPSAPARA-RALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGG----EVGAVGGGLAVTLALVLLLRRYSVKYMARL-AEEG-------EEEGGGEGEEEG---AEEGGERLGLLAEKGGGRGKGGGRG 368
            +L +L+VV +  V G  L   +  ++ +   W++A AP SA+YYA  T LW++LCLPST+IEL GG IF  PV LLT+ V K  GC LAFLL +  A+ +LR  L                              L   R PA   PS P S   R  RA+F+AME HPWK+T LLRF+ +PI++KNYGMA LPCP  VF LCT  AS+P+TL+W + G S+++L + L GGG   +  G    E+G +  GLA+ + L+ +LRRY+ +Y A + AEE        E  G G+GEE+    A+EGG +     ++ G   K  G G
Sbjct:  170 MLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAERAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKRGHG 495          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|585110831|gb|EWM28436.1| (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana])

HSP 1 Score: 99.3673 bits (246), Expect = 3.296e-19
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 0
Query:  217 ALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLG--GGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGEEEGAEE 346
            AL  A+++HPW++  LLR + +PI  KNYGMA LP P  +++LC L A +P+T+LW H G S RSL + +   G G RR    E+  +   + + +AL +L+RRY+ +Y   L EE E+      EEE  EE
Sbjct:  321 ALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEE 452          

HSP 2 Score: 62.003 bits (149), Expect = 7.633e-7
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 0
Query:  105 GGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARAL 218
            G   LA +   L     ++Q RAPLSA+Y A    LW++LCLP+TL+E+  G I+  PV  +++ V K  GC L F +G+C+   S +   L    +         A ARARAL
Sbjct:  118 GSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTK-----GEQDAVARARAL 226          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|1173959489|gb|OQS05717.1| (ATP-binding Cassette (ABC) superfamily [Thraustotheca clavata])

HSP 1 Score: 93.5893 bits (231), Expect = 2.140e-18
Identity = 65/228 (28.51%), Postives = 107/228 (46.93%), Query Frame = 0
Query:  114 SRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGG-GRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGE 340
            S  +D+  W+Q         Y     + ++ CLP+T+ E+  G+IFG+        V K  G C++F+ GR      + + L          S PP    RA  + L      WK+  L R  ++PIA+KNYG++ LP  F +F   TL    P+  +  + G ++  +  ++ G    +  +   + AVGGG A+T  L  L+  Y+ KY+ +LAE+  E    + E
Sbjct:   29 SYFSDVFQWLQTHPTSGGFIYMVIYAITIVFCLPATVFEMIAGYIFGMWWGWAIAIVGKTTGSCISFVFGRYFFHARVLRLL---------ESGPP--IFRALGILLNRPDLKWKIVCLTRIAWMPIAIKNYGLSVLPVSFRMFFWSTLLLGTPFGGVSCYIGHTATHVNSIVSGSHESKSHLQFVLMAVGGGSALT--LFCLVGYYTRKYIEQLAEKDLEMTTTKHE 243          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|953502243|emb|CEG36628.1| (atp-binding cassette superfamily [Plasmopara halstedii])

HSP 1 Score: 91.6633 bits (226), Expect = 1.724e-17
Identity = 71/236 (30.08%), Postives = 116/236 (49.15%), Query Frame = 0
Query:  103 VTGGTLLALF--HSRLTDLMAWVQARAPL-SALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGG-GGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEE 334
            VT G ++  F   +  T ++ W+Q    L +ALY  +FT  +V+LC PST+ EL  G+IFGL + LL     K  G  L++++GR +    +   +       PA     S   + + L          +  L R  + PIA+KNYG++ L   F V+    L   LP++ +W ++G +  ++  +L      R    G +  VG G A  L L+ ++  YS KY+  LA+E ++E
Sbjct:   47 VTAGLIVIRFVRSNDFTLVVQWLQVHEALGAALYVCSFTC-FVVLCFPSTVFELLAGYIFGLWLGLLLATTGKLLGSVLSYVIGRYMCRHRVHSYM---ARGHPALQGFQSLLRKRQIL----------IVFLTRVAFFPIAIKNYGLSVLDVRFSVYFAAALLTGLPFSFIWVYSGHAVENVAALLVSPTASRHSTEGILLLVGAGSA--LLLLFMVGYYSRKYVLELAKEEQDE 266          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|1173947608|gb|OQR95846.1| (ATP-binding Cassette (ABC) superfamily [Achlya hypogyna])

HSP 1 Score: 90.8929 bits (224), Expect = 2.443e-17
Identity = 70/221 (31.67%), Postives = 106/221 (47.96%), Query Frame = 0
Query:  114 SRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEE 334
            S + D + W++A   +  + Y       ++LCLP+TL EL  G++FG         VAK  G CLAF LGR      L    +L  +   AP        RA  L LA     WK+  L R  ++PIA+KNYG++ LP PF +F   TL    P+  +  + G S+  +  +L G      +  + G +  G A  LAL+ L+   + KY+  LA+   ++
Sbjct:   27 SFVADSVEWLRAHQLMGGVLYTVGFTASIVLCLPATLFELIAGYVFGFWGGWAISIVAKTAGSCLAFCLGR-----YLLHARVLRLLDSGAP------LFRALGLLLARSDMKWKIVCLARAAWMPIAIKNYGLSVLPVPFSLFFWSTLLLGTPFGGISCYLGHSATQVSSLLSGHHDSGYL--KFGLLAVGAASGLALLCLVGYQTRKYIEELADAERDD 234          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|669171049|ref|XP_008620873.1| (hypothetical protein SDRG_16441 [Saprolegnia diclina VS20] >gi|530727461|gb|EQC25703.1| hypothetical protein SDRG_16441 [Saprolegnia diclina VS20])

HSP 1 Score: 89.3521 bits (220), Expect = 1.013e-16
Identity = 74/232 (31.90%), Postives = 108/232 (46.55%), Query Frame = 0
Query:  120 MAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGG---GGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLA---EEGE-EEGGGEGEEEGA 344
            + W++A      L Y       V+LCLP+TL EL  G+IFG     +   V K  G CL+F +GR           +L  +   AP        RA  L L+     WK+  L R  ++PIA+KNYG++ LP PFP+F   TL    P+  +  + G S+  +  +L G    G  + +   VGA  G     L L+ L+   + KY+  LA    +G+ E  GG+   E A
Sbjct:   34 VHWLRAHPATGGLLYILLYTCCVVLCLPATLFELVAGYIFGFWGGWVISIVGKTTGSCLSFYIGR-----YFLHARVLRILESGAPMF------RALGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSGKHESGYFKVILMAVGATSG-----LTLLCLVGYQTRKYIEELAAAERDGDLELMGGQHTHEYA 249          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|673030216|ref|XP_008869069.1| (hypothetical protein H310_05973 [Aphanomyces invadans] >gi|574475464|gb|ETW02464.1| hypothetical protein H310_05973 [Aphanomyces invadans])

HSP 1 Score: 88.5817 bits (218), Expect = 2.116e-16
Identity = 73/232 (31.47%), Postives = 109/232 (46.98%), Query Frame = 0
Query:  118 DLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPV-TLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGR--RQVGGEVGAVGGGLAVTLALVLLLRRYSVK-YMARLAEEGEE---EGGGEGEEE 342
            +L+ W Q    L  L Y  F    V+LC PST+ +L  G+IFG    T + +G  K  G  +AFLLGR V  D++R+ L            PP      RA  L +ER+  +  LLL+F Y+PI +KNYG+A    PF +F    +      T L  + G S+  + ++L     R   +V  EV  +     V+  L+ ++  Y  K Y+  LA+       + G +G  E
Sbjct:   65 ELVRWEQDHQVLGGLIYVLFYAACVVLCCPSTIFDLLAGYIFGFGFGTAVAMG-GKTLGSVVAFLLGRYVMHDTIRRKL---------TEGPPV----LRAWALLLERNELQFVLLLQFAYIPIFLKNYGLAVAGVPFGLFLWTNVVIGGARTWLAVYIGHSTAHITEILTSHAARGDARVAQEVLMIVA--VVSTLLLFVVGSYRTKQYLDELADREVNALVDNGDKGHFE 280          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|813170565|ref|XP_012204038.1| (hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65] >gi|641531083|gb|KDO25172.1| hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 86.6557 bits (213), Expect = 7.681e-16
Identity = 69/230 (30.00%), Postives = 104/230 (45.22%), Query Frame = 0
Query:  120 MAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEVGAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGGGEGEEEGAEEGGE 349
            + W++A      L Y       V+LCLP+TL EL  G++FG         V K  G CL+F +GR           +L  +   AP        RA  L L+     WK+  L R  ++PIA+KNYG++ LP PFP+F   TL    P+  +  + G S+  +  +L G          + A+G    +T  L+ L+   + KY+  LA     E  G+ E  G ++  E
Sbjct:   35 VHWLRAHPATGGLLYTLLYTCCVVLCLPATLFELVAGYVFGFWGGWAISIVGKTAGSCLSFYIGR-----YFLHARVLRVLESGAPMF------RALGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSGKHESSCFKFVLMAIGATSGLT--LLCLVGYQTRKYIEELA---AAERDGDLELRGGQQSHE 248          
BLAST of EWM20987.1 vs. NCBI_GenBank
Match: gi|695412349|ref|XP_009525716.1| (hypothetical protein PHYSODRAFT_360349 [Phytophthora sojae] >gi|348676841|gb|EGZ16658.1| hypothetical protein PHYSODRAFT_360349 [Phytophthora sojae])

HSP 1 Score: 86.2705 bits (212), Expect = 1.664e-15
Identity = 80/244 (32.79%), Postives = 115/244 (47.13%), Query Frame = 0
Query:   97 VVSLLLVTGGTLLALFHSRLTDLMA-WVQARAPL-SALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVR-PPAPSAPPSAPARARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGRRQVGGEV-GAVGGGLAVTLALVLLLRRYSVKYMARLAEEGEEEGG 336
            V +L L  G  L     S   DL+  W+Q    L +ALY  +FT  +V+LC PST  EL  G+IFG  + LL     K  G  L++ +GR +     R+ +     R  PA     S   + + L          V  L R  + PIAVKNYG++ L   FPVF    L   LP++++W ++G +  +   +L      R     V   VG G A+ L  V+ +  Y+ KY+  LAEE + EG 
Sbjct:   40 VAALGLTAGMLLFRFVRSDDFDLVVRWLQTHEALGAALYVGSFTG-FVVLCFPSTAFELLAGYIFGFWLGLLLATAGKLVGSVLSYAIGRYLC----RRRVHAYMARGHPALQGFQSLLRKRQVL----------VVFLTRVAFFPIAVKNYGLSVLDVQFPVFFAAALLTGLPFSVIWVYSGHAVENFTALLASPTASRHSTEMVLLLVGAGSALLLLAVVGI--YTRKYVLGLAEEEKREGA 266          
The following BLAST results are available for this feature:
BLAST of EWM20987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100983|gb|EWM20987.1|0.000e+0100.00SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|585108346|gb|EWM26339.1|9.498e-5941.10SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|585110831|gb|EWM28436.1|3.296e-1941.67hypothetical protein Naga_100924g3 [Nannochloropsi... [more]
gi|1173959489|gb|OQS05717.1|2.140e-1828.51ATP-binding Cassette (ABC) superfamily [Thraustoth... [more]
gi|953502243|emb|CEG36628.1|1.724e-1730.08atp-binding cassette superfamily [Plasmopara halst... [more]
gi|1173947608|gb|OQR95846.1|2.443e-1731.67ATP-binding Cassette (ABC) superfamily [Achlya hyp... [more]
gi|669171049|ref|XP_008620873.1|1.013e-1631.90hypothetical protein SDRG_16441 [Saprolegnia dicli... [more]
gi|673030216|ref|XP_008869069.1|2.116e-1631.47hypothetical protein H310_05973 [Aphanomyces invad... [more]
gi|813170565|ref|XP_012204038.1|7.681e-1630.00hypothetical protein SPRG_09446 [Saprolegnia paras... [more]
gi|695412349|ref|XP_009525716.1|1.664e-1532.79hypothetical protein PHYSODRAFT_360349 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9717rna9717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications