EWM21005.1, cds9664 (CDS) Nannochloropsis gaditana

Overview
NameEWM21005.1
Unique Namecds9664
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:180726..180788 -
Alignment locationKK037255.1:180585..180629 -
Alignment locationKK037255.1:180410..180507 -
Alignment locationKK037255.1:180246..180290 -
Alignment locationKK037255.1:180021..180171 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21005.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100081g12.752.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:180726..180788 -
KK037255.1supercontigKK037255.1:180585..180629 -
KK037255.1supercontigKK037255.1:180410..180507 -
KK037255.1supercontigKK037255.1:180246..180290 -
KK037255.1supercontigKK037255.1:180021..180171 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|585101003|gb|EWM21005.1| (hypothetical protein Naga_100081g12 [Nannochloropsis gaditana])

HSP 1 Score: 272.707 bits (696), Expect = 9.733e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI 133
            MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI
Sbjct:    1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI 133          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|299115350|emb|CBN74171.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.908 bits (250), Expect = 3.459e-25
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARM 93
            +SS +LYRDCLR+ DHIASKSPKG  LR +LR+EFKKN    D  ++E LK  A RGL+NYL++ESGS +P+++ RM
Sbjct:    9 RSSTRLYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRM 85          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|673029408|ref|XP_008868665.1| (hypothetical protein H310_05672 [Aphanomyces invadans] >gi|574475060|gb|ETW02060.1| hypothetical protein H310_05672 [Aphanomyces invadans])

HSP 1 Score: 86.6557 bits (213), Expect = 1.311e-19
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAK 109
            ++S+QLYRDCLR+A+HI  K+ KG A+R MLR+EF+K+    D  ++E LK NA RGL+NYL+  + SK+ K++  +  T     K    NA+
Sbjct:    9 RTSLQLYRDCLRLANHIGGKTKKGYAIRSMLRAEFRKSMNETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKDSAANAE 101          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|698801358|ref|XP_009833708.1| (hypothetical protein H257_09247 [Aphanomyces astaci] >gi|574111300|gb|ETV76796.1| hypothetical protein H257_09247 [Aphanomyces astaci])

HSP 1 Score: 84.7297 bits (208), Expect = 8.091e-19
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRE 111
            ++S+QLYRDCLR+A+HI  K+ KG A+R MLR+EF+K+    D  ++E LK NA RGL+NYL+  + SK+ K++  +  T     K   N   +E
Sbjct:    9 RTSLQLYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKDPANAEWKE 103          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|301093452|ref|XP_002997572.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110535|gb|EEY68587.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 83.5741 bits (205), Expect = 1.847e-18
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 0
Query:   13 NVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNK 95
            N   ++++QLYRDCLR+A HI   S KG A+R+++R EF K  +  D +++E LK NA RGL+NYL+  + SK+ +++  MNK
Sbjct:    5 NQVTRTTIQLYRDCLRLAKHIGGNSKKGQAIRELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLQEAMNK 87          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|669151164|ref|XP_008611144.1| (hypothetical protein SDRG_07104 [Saprolegnia diclina VS20] >gi|530737152|gb|EQC35394.1| hypothetical protein SDRG_07104 [Saprolegnia diclina VS20])

HSP 1 Score: 82.8037 bits (203), Expect = 3.683e-18
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 96
            +SS+QLYRDCLR+A HI   S KG A+R MLR+EF+K+    D  ++E LK NA RGL+NYL+  + SK+ K++  +  T
Sbjct:    8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRTMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|813171478|ref|XP_012204494.1| (hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65] >gi|641530735|gb|KDO24847.1| hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.8037 bits (203), Expect = 3.804e-18
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 96
            +SS+QLYRDCLR+A HI   S KG A+R MLR+EF+K+    D  ++E LK NA RGL+NYL+  + SK+ K++  +  T
Sbjct:    8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRSMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|953500066|emb|CEG38707.1| (Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 82.4185 bits (202), Expect = 5.503e-18
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0
Query:   17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTS 98
            +S+ QLYRDCLR+A HI   S KG A++ ++R EF K  +  D +++E LK NA RGL+NYL+  + SK+ ++R  MNK +S
Sbjct:    8 RSTKQLYRDCLRLAKHIGGNSKKGQAIKDLIRREFDKGRSEVDIEKIETLKANAVRGLSNYLMLANSSKDQRLRDAMNKKSS 89          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|325192641|emb|CCA27064.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 82.0333 bits (201), Expect = 7.187e-18
Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   10 TLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARM 93
            ++ +V  ++S+QLYRDCLR+A HI   S KG+A+++++R EF K     D +++E LK NA RGL+NYL+  + SK+ K++  M
Sbjct:    2 SVSSVMTRTSIQLYRDCLRLAKHIGGSSKKGLAIKELVRREFDKGKLETDPEKIEALKANAVRGLSNYLVMANASKDIKLKNAM 85          
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|675204583|ref|XP_008911176.1| (hypothetical protein PPTG_15655 [Phytophthora parasitica INRA-310] >gi|566015177|gb|ETI38088.1| hypothetical protein F443_16100 [Phytophthora parasitica P1569] >gi|567952636|gb|ETK78308.1| hypothetical protein L915_15645 [Phytophthora parasitica] >gi|567981295|gb|ETL31738.1| hypothetical protein L916_15541 [Phytophthora parasitica] >gi|568010783|gb|ETL84966.1| hypothetical protein L917_15363 [Phytophthora parasitica] >gi|568040687|gb|ETM38135.1| hypothetical protein L914_15496 [Phytophthora parasitica] >gi|568088546|gb|ETN03403.1| hypothetical protein PPTG_15655 [Phytophthora parasitica INRA-310] >gi|570318911|gb|ETO66859.1| hypothetical protein F444_16085 [Phytophthora parasitica P1976] >gi|570942716|gb|ETP07973.1| hypothetical protein F441_15929 [Phytophthora parasitica CJ01A1] >gi|570973357|gb|ETP36018.1| hypothetical protein F442_15951 [Phytophthora parasitica P10297] >gi|970658147|gb|KUF95948.1| hypothetical protein AM587_10010825 [Phytophthora nicotianae])

HSP 1 Score: 82.0333 bits (201), Expect = 1.046e-17
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 0
Query:    1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNK 95
            M L +    +  N   ++++QLYRDCLR+A HI   S KG A+++++R EF K  +  D +++E LK NA RGL+NYL+  + SK+ ++   MNK
Sbjct:    1 MPLDANRNMSATNQVTRTTIQLYRDCLRLAKHIGGNSKKGQAIKELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMNK 95          
The following BLAST results are available for this feature:
BLAST of EWM21005.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101003|gb|EWM21005.1|9.733e-93100.00hypothetical protein Naga_100081g12 [Nannochlorops... [more]
gi|299115350|emb|CBN74171.1|3.459e-2559.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|673029408|ref|XP_008868665.1|1.311e-1945.16hypothetical protein H310_05672 [Aphanomyces invad... [more]
gi|698801358|ref|XP_009833708.1|8.091e-1944.21hypothetical protein H257_09247 [Aphanomyces astac... [more]
gi|301093452|ref|XP_002997572.1|1.847e-1845.78conserved hypothetical protein [Phytophthora infes... [more]
gi|669151164|ref|XP_008611144.1|3.683e-1850.00hypothetical protein SDRG_07104 [Saprolegnia dicli... [more]
gi|813171478|ref|XP_012204494.1|3.804e-1850.00hypothetical protein SPRG_09680 [Saprolegnia paras... [more]
gi|953500066|emb|CEG38707.1|5.503e-1847.56Complex 1 LYR protein [Plasmopara halstedii][more]
gi|325192641|emb|CCA27064.1|7.187e-1844.05conserved hypothetical protein [Albugo laibachii N... [more]
gi|675204583|ref|XP_008911176.1|1.046e-1741.05hypothetical protein PPTG_15655 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9695rna9695Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications