EWM21005.1, cds9664 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|585101003|gb|EWM21005.1| (hypothetical protein Naga_100081g12 [Nannochloropsis gaditana]) HSP 1 Score: 272.707 bits (696), Expect = 9.733e-93 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI 133
MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI
Sbjct: 1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI 133
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|299115350|emb|CBN74171.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.908 bits (250), Expect = 3.459e-25 Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARM 93
+SS +LYRDCLR+ DHIASKSPKG LR +LR+EFKKN D ++E LK A RGL+NYL++ESGS +P+++ RM
Sbjct: 9 RSSTRLYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRM 85
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|673029408|ref|XP_008868665.1| (hypothetical protein H310_05672 [Aphanomyces invadans] >gi|574475060|gb|ETW02060.1| hypothetical protein H310_05672 [Aphanomyces invadans]) HSP 1 Score: 86.6557 bits (213), Expect = 1.311e-19 Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAK 109
++S+QLYRDCLR+A+HI K+ KG A+R MLR+EF+K+ D ++E LK NA RGL+NYL+ + SK+ K++ + T K NA+
Sbjct: 9 RTSLQLYRDCLRLANHIGGKTKKGYAIRSMLRAEFRKSMNETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKDSAANAE 101
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|698801358|ref|XP_009833708.1| (hypothetical protein H257_09247 [Aphanomyces astaci] >gi|574111300|gb|ETV76796.1| hypothetical protein H257_09247 [Aphanomyces astaci]) HSP 1 Score: 84.7297 bits (208), Expect = 8.091e-19 Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRE 111
++S+QLYRDCLR+A+HI K+ KG A+R MLR+EF+K+ D ++E LK NA RGL+NYL+ + SK+ K++ + T K N +E
Sbjct: 9 RTSLQLYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKDPANAEWKE 103
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|301093452|ref|XP_002997572.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110535|gb|EEY68587.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 83.5741 bits (205), Expect = 1.847e-18 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 0
Query: 13 NVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNK 95
N ++++QLYRDCLR+A HI S KG A+R+++R EF K + D +++E LK NA RGL+NYL+ + SK+ +++ MNK
Sbjct: 5 NQVTRTTIQLYRDCLRLAKHIGGNSKKGQAIRELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLQEAMNK 87
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|669151164|ref|XP_008611144.1| (hypothetical protein SDRG_07104 [Saprolegnia diclina VS20] >gi|530737152|gb|EQC35394.1| hypothetical protein SDRG_07104 [Saprolegnia diclina VS20]) HSP 1 Score: 82.8037 bits (203), Expect = 3.683e-18 Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 96
+SS+QLYRDCLR+A HI S KG A+R MLR+EF+K+ D ++E LK NA RGL+NYL+ + SK+ K++ + T
Sbjct: 8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRTMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|813171478|ref|XP_012204494.1| (hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65] >gi|641530735|gb|KDO24847.1| hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 82.8037 bits (203), Expect = 3.804e-18 Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 96
+SS+QLYRDCLR+A HI S KG A+R MLR+EF+K+ D ++E LK NA RGL+NYL+ + SK+ K++ + T
Sbjct: 8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRSMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|953500066|emb|CEG38707.1| (Complex 1 LYR protein [Plasmopara halstedii]) HSP 1 Score: 82.4185 bits (202), Expect = 5.503e-18 Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0
Query: 17 KSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTS 98
+S+ QLYRDCLR+A HI S KG A++ ++R EF K + D +++E LK NA RGL+NYL+ + SK+ ++R MNK +S
Sbjct: 8 RSTKQLYRDCLRLAKHIGGNSKKGQAIKDLIRREFDKGRSEVDIEKIETLKANAVRGLSNYLMLANSSKDQRLRDAMNKKSS 89
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|325192641|emb|CCA27064.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 82.0333 bits (201), Expect = 7.187e-18 Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 0
Query: 10 TLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARM 93
++ +V ++S+QLYRDCLR+A HI S KG+A+++++R EF K D +++E LK NA RGL+NYL+ + SK+ K++ M
Sbjct: 2 SVSSVMTRTSIQLYRDCLRLAKHIGGSSKKGLAIKELVRREFDKGKLETDPEKIEALKANAVRGLSNYLVMANASKDIKLKNAM 85
BLAST of EWM21005.1 vs. NCBI_GenBank
Match: gi|675204583|ref|XP_008911176.1| (hypothetical protein PPTG_15655 [Phytophthora parasitica INRA-310] >gi|566015177|gb|ETI38088.1| hypothetical protein F443_16100 [Phytophthora parasitica P1569] >gi|567952636|gb|ETK78308.1| hypothetical protein L915_15645 [Phytophthora parasitica] >gi|567981295|gb|ETL31738.1| hypothetical protein L916_15541 [Phytophthora parasitica] >gi|568010783|gb|ETL84966.1| hypothetical protein L917_15363 [Phytophthora parasitica] >gi|568040687|gb|ETM38135.1| hypothetical protein L914_15496 [Phytophthora parasitica] >gi|568088546|gb|ETN03403.1| hypothetical protein PPTG_15655 [Phytophthora parasitica INRA-310] >gi|570318911|gb|ETO66859.1| hypothetical protein F444_16085 [Phytophthora parasitica P1976] >gi|570942716|gb|ETP07973.1| hypothetical protein F441_15929 [Phytophthora parasitica CJ01A1] >gi|570973357|gb|ETP36018.1| hypothetical protein F442_15951 [Phytophthora parasitica P10297] >gi|970658147|gb|KUF95948.1| hypothetical protein AM587_10010825 [Phytophthora nicotianae]) HSP 1 Score: 82.0333 bits (201), Expect = 1.046e-17 Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 0
Query: 1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNK 95
M L + + N ++++QLYRDCLR+A HI S KG A+++++R EF K + D +++E LK NA RGL+NYL+ + SK+ ++ MNK
Sbjct: 1 MPLDANRNMSATNQVTRTTIQLYRDCLRLAKHIGGNSKKGQAIKELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMNK 95 The following BLAST results are available for this feature:
BLAST of EWM21005.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|