EWM29719.1, cds965 (CDS) Nannochloropsis gaditana

Overview
NameEWM29719.1
Unique Namecds965
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:850566..850776 -
Alignment locationCM002456.1:850178..850263 -
Alignment locationCM002456.1:849614..850057 -

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Properties
Property NameValue
Protein idEWM29719.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100124g13.8340.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:850566..850776 -
CM002456.1supercontigCM002456.1:850178..850263 -
CM002456.1supercontigCM002456.1:849614..850057 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29719.1 vs. NCBI_GenBank
Match: gi|585112297|gb|EWM29719.1| (hypothetical protein Naga_100124g13 [Nannochloropsis gaditana])

HSP 1 Score: 504.597 bits (1298), Expect = 1.037e-180
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MLRLALRPGDADTFMNRIVGCGLMMLTIVQGYNLGGKSTINRLGSRQMQRQNIFTSYSASSNNFYSSSFQPLGAPPRTIEQEEGFSLGLQAEKSGGQFEEYVVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGPDYVCLRLRKGCDYHLLERGDLDARRETYDDEATLEPEEQEARWIRRAESIFIDEWGWQTPEGEGDEEQENW 246
            MLRLALRPGDADTFMNRIVGCGLMMLTIVQGYNLGGKSTINRLGSRQMQRQNIFTSYSASSNNFYSSSFQPLGAPPRTIEQEEGFSLGLQAEKSGGQFEEYVVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGPDYVCLRLRKGCDYHLLERGDLDARRETYDDEATLEPEEQEARWIRRAESIFIDEWGWQTPEGEGDEEQENW
Sbjct:    1 MLRLALRPGDADTFMNRIVGCGLMMLTIVQGYNLGGKSTINRLGSRQMQRQNIFTSYSASSNNFYSSSFQPLGAPPRTIEQEEGFSLGLQAEKSGGQFEEYVVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGPDYVCLRLRKGCDYHLLERGDLDARRETYDDEATLEPEEQEARWIRRAESIFIDEWGWQTPEGEGDEEQENW 246          
BLAST of EWM29719.1 vs. NCBI_GenBank
Match: gi|298709634|emb|CBJ31443.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.633 bits (174), Expect = 7.159e-11
Identity = 32/84 (38.10%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  102 VVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGPDYVCLRLRKG 185
            + N++KPLG+ +EE+ D + +VY+    +KA+AAG++VGDV+ G S +F D  + +V  K +E + SL+R R   +  +R+ +G
Sbjct:  202 IANMTKPLGITIEESTDKAQLVYLTSVGDKAEAAGLQVGDVLTGVSAVFGDE-VWSVKDKHIEEIRSLVRCRPEPFSLIRVERG 284          
BLAST of EWM29719.1 vs. NCBI_GenBank
Match: gi|223996031|ref|XP_002287689.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976805|gb|EED95132.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 61.6178 bits (148), Expect = 1.510e-7
Identity = 50/177 (28.25%), Postives = 85/177 (48.02%), Query Frame = 0
Query:   24 MMLTIVQGYNLGGKSTINRLGSRQMQRQNIFTSYSASS------NNFYSSSFQPLGAPPRTIEQEEGFSLGLQAEKSGGQFEEYVVNVSKPLGVAVEEA----GDGSGMVYVVEANE--KAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGP-DYVCLRLRKGCD 187
            + LT +  + L     +    S  +QR   F++ S+ S      +  ++SS +P           +       A K      E+++   KPLG +VEE+     DG+  V++ + NE   A+ AG+EVGDVI+  S  FD++  VNV   G+E++ SL+  R   + + +R  +G D
Sbjct:   16 LRLTSLTSFALA----LTIFASSHIQRAFGFSTPSSPSTRTAPLHTLHASSRKPTALQYSDFRPSDDLPTLTGALKDA-TVHEFILQNHKPLGCSVEESLAEEPDGAKYVFIAQVNEGGNAEKAGIEVGDVILQLSGTFDET--VNVASLGIEKIRSLVAGRPKENPLTIRTARGSD 185          
The following BLAST results are available for this feature:
BLAST of EWM29719.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112297|gb|EWM29719.1|1.037e-180100.00hypothetical protein Naga_100124g13 [Nannochlorops... [more]
gi|298709634|emb|CBJ31443.1|7.159e-1138.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|223996031|ref|XP_002287689.1|1.510e-728.25predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna965rna965Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications