EWM21027.1, cds9646 (CDS) Nannochloropsis gaditana

Overview
NameEWM21027.1
Unique Namecds9646
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:124029..124597 +
Alignment locationKK037255.1:125262..125436 +
Alignment locationKK037255.1:125606..125680 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21027.1
Productvoltage-gated ion channel superfamily
Orig transcript idgnl|cribi|Naga_100860g1.1697.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:124029..124597 +
KK037255.1supercontigKK037255.1:125262..125436 +
KK037255.1supercontigKK037255.1:125606..125680 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006811ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Homology
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|585101031|gb|EWM21027.1| (voltage-gated ion channel superfamily [Nannochloropsis gaditana])

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MTRRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGRPWIRRLPASTATPPSPPSCADSSSSPASSSPSTPPDLRGEDLRLSSAFSFASGRASFSPSSSSNRCIARSVWAVSGPTRTPT 272
            MTRRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGRPWIRRLPASTATPPSPPSCADSSSSPASSSPSTPPDLRGEDLRLSSAFSFASGRASFSPSSSSNRCIARSVWAVSGPTRTPT
Sbjct:    1 MTRRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGRPWIRRLPASTATPPSPPSCADSSSSPASSSPSTPPDLRGEDLRLSSAFSFASGRASFSPSSSSNRCIARSVWAVSGPTRTPT 272          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|1176103812|ref|XP_020622701.1| (voltage-dependent T-type calcium channel subunit alpha-1H-like [Orbicella faveolata])

HSP 1 Score: 108.997 bits (271), Expect = 4.853e-23
Identity = 68/186 (36.56%), Postives = 102/186 (54.84%), Query Frame = 0
Query:    4 RLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLG 189
            ++   L  LN +F  IF  E  +K+ G G   Y K      D  +VV+S++E+F GG S+ S  LR  RLLR+F L R   + R  L  +++T  N + FL L   F+   +I GM   GGK    D   G+   ARANFD  +WA++++FQ++T +DWN  MY  M A  +  AA +++  + +G
Sbjct:  945 KMTEVLEILNYIFTAIFGFEMLLKLMGLGPYGYIKDPFNLFDGFIVVMSIVELFGGGDSSIS-VLRSFRLLRIFKLVRFLPALRRQLLVMIHTMDNVMTFLALLVLFIFTASILGMNLFGGKYMFPDED-GVETAARANFDDLFWALVTVFQVLTQEDWNTVMYDGMRAT-SKWAALYFILLMTIG 1127          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|156371714|ref|XP_001628907.1| (predicted protein [Nematostella vectensis] >gi|156215895|gb|EDO36844.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 106.686 bits (265), Expect = 2.659e-22
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGA 172
            +++   L   N +F  IF +E  +K+ G G+  Y K      D  +V+IS++E+F G   +    LR  RLLR+F L R   + R  L  +++T  N + FL L   F+   +I GM   GGK R  +   G+   +RANFD  +WA++++FQ++T +DWN+ MY  M A
Sbjct:  437 QKMTDVLEIFNYIFTAIFGIEMIMKLIGLGFYGYIKDAFNIFDGTIVIISVVELF-GDDDSGISVLRSFRLLRVFKLVRFLPALRRQLLVMIHTMDNVMTFLALLVIFMFTASILGMNLFGGKYRFPN-DEGVMETSRANFDDLFWAIVTVFQVLTQEDWNIVMYDGMRA 604          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|831320103|ref|XP_012692866.1| (PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1I-like [Clupea harengus])

HSP 1 Score: 103.219 bits (256), Expect = 4.396e-21
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLG 189
              L   L   N +F  +F LE  +K+  +G+  Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T AN   F +L   F+ +F+I GM   G K        G  VP R NFDS  WA++++FQI+T +DWN+ +Y  M A+ + LAA ++V  +  G
Sbjct:  601 EELTNILEICNIVFTSMFALEMMLKLTAFGFFSYLRNAYNIFDGIIVIISVCEI-IGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMANVATFCMLLMLFIFIFSILGMHIFGCKF-SLKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGM-ASTSPLAALYFVALMTFG 784          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|1079742877|ref|XP_018540847.1| (PREDICTED: LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like [Lates calcarifer])

HSP 1 Score: 102.834 bits (255), Expect = 6.589e-21
Identity = 64/187 (34.22%), Postives = 97/187 (51.87%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLG 189
              L   L   N +F  +F LE  +K+  +G   Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K       TG  VP R NFDS  WA++++FQI+T +DWN+ +Y  M AA + LAA ++V  +  G
Sbjct:  745 EELTNVLEICNIVFTSMFSLEMILKLTAFGSFNYLRNPYNVFDGIIVIISVCEI-VGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKF-SLKTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGM-AATSPLAALYFVALMTFG 928          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|1168879904|ref|XP_020499268.1| (LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like [Labrus bergylta])

HSP 1 Score: 102.449 bits (254), Expect = 8.024e-21
Identity = 63/188 (33.51%), Postives = 96/188 (51.06%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGR 190
              L   L   N +F  +F LE  +K+  +G   Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K       TG  VP R NFDS  WA++++FQI+T +DWN  +Y  M AA + +AA ++V  +  G 
Sbjct:  698 EELTNVLEICNIVFTSMFSLEMILKITAYGSFTYLRNPYNVFDGIIVIISVCEI-VGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKF-SLKTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNAVLYNGM-AATSPVAALYFVALMTFGN 882          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|831285226|ref|XP_012673872.1| (PREDICTED: LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I, partial [Clupea harengus])

HSP 1 Score: 102.449 bits (254), Expect = 8.296e-21
Identity = 63/187 (33.69%), Postives = 96/187 (51.34%), Query Frame = 0
Query:    4 RLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGR 190
             L   L   N +F  +F LE  +K+  +G+  Y +      D ++V+IS+ E+ +G        LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K        G  VP R NFDS  WA++++FQI+T +DWN+ +Y  M AA + LAA ++V  +  G 
Sbjct:  658 ELTNVLEICNIVFTSMFTLEMILKLTAFGFFEYLRNPYNIFDGIIVIISVCEI-IGQADGGLSVLRTFRLLRVIKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKF-SLKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNMVLYNGM-AATSPLAALYFVALMTFGN 841          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|768942602|ref|XP_011611054.1| (PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X2 [Takifugu rubripes])

HSP 1 Score: 102.449 bits (254), Expect = 8.324e-21
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGR 190
              L   L   N +F  +F LE  +K+  +G   Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K       TG  VP R NFDS  WA++++FQI+T +DWN+ +Y  M AA + LAA ++V  +  G 
Sbjct:  701 EELTNVLEICNIVFTSMFSLEMILKLTAFGSFNYLRNPYNVFDGVIVIISVCEI-VGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKF-SIKTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGM-AATSPLAALYFVALMTFGN 885          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|768942600|ref|XP_011611053.1| (PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X1 [Takifugu rubripes])

HSP 1 Score: 102.449 bits (254), Expect = 8.729e-21
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGR 190
              L   L   N +F  +F LE  +K+  +G   Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K       TG  VP R NFDS  WA++++FQI+T +DWN+ +Y  M AA + LAA ++V  +  G 
Sbjct:  701 EELTNVLEICNIVFTSMFSLEMILKLTAFGSFNYLRNPYNVFDGVIVIISVCEI-VGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKF-SIKTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGM-AATSPLAALYFVALMTFGN 885          
BLAST of EWM21027.1 vs. NCBI_GenBank
Match: gi|929327169|ref|XP_014040178.1| (PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1I-like, partial [Salmo salar])

HSP 1 Score: 97.8265 bits (242), Expect = 9.711e-21
Identity = 71/234 (30.34%), Postives = 109/234 (46.58%), Query Frame = 0
Query:    3 RRLARALTRLNNLFVLIFCLEAYIKVRGWGWPLYKKLGSPALDFLVVVISLLEVFLGGTSARSYALRCVRLLRLFSLGRKWKSFRLVLTNVLYTAANSLPFLLLTTTFLSVFAIGGMTFLGGKLRDTDPSTGLPVPARANFDSFYWAVISIFQIMTLDDWNLHMYRAMGAADAALAAGFYVTAVLLGRPWIRRLPASTATPP-SPPSCADSSSSPASSSPSTPPDLRGEDLRLS 235
              L   L   N +F  +F +E  +K+   G   Y +      D ++V+IS+ E+ +G +      LR  RLLR+  L R   + R  L  ++ T  N   F +L   F+ +F+I GM   G K        G  VP R NFDS  WA++++FQI+T +DWN  +Y  M AA + LAA ++V  +  G   +  L  +           A+ S S   SS     +   + L+LS
Sbjct:   20 EELTNVLEICNIVFTSMFAMEMILKITASGCFNYLRNPYNVFDGVIVIISVCEI-IGQSDGGLSILRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFS-LKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNTVLYNGM-AATSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSEDDSSNFDESEKLNDSLKLS 250          
The following BLAST results are available for this feature:
BLAST of EWM21027.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101031|gb|EWM21027.1|0.000e+0100.00voltage-gated ion channel superfamily [Nannochloro... [more]
gi|1176103812|ref|XP_020622701.1|4.853e-2336.56voltage-dependent T-type calcium channel subunit a... [more]
gi|156371714|ref|XP_001628907.1|2.659e-2235.29predicted protein [Nematostella vectensis] >gi|156... [more]
gi|831320103|ref|XP_012692866.1|4.396e-2133.69PREDICTED: voltage-dependent T-type calcium channe... [more]
gi|1079742877|ref|XP_018540847.1|6.589e-2134.22PREDICTED: LOW QUALITY PROTEIN: voltage-dependent ... [more]
gi|1168879904|ref|XP_020499268.1|8.024e-2133.51LOW QUALITY PROTEIN: voltage-dependent T-type calc... [more]
gi|831285226|ref|XP_012673872.1|8.296e-2133.69PREDICTED: LOW QUALITY PROTEIN: voltage-dependent ... [more]
gi|768942602|ref|XP_011611054.1|8.324e-2134.04PREDICTED: voltage-dependent T-type calcium channe... [more]
gi|768942600|ref|XP_011611053.1|8.729e-2134.04PREDICTED: voltage-dependent T-type calcium channe... [more]
gi|929327169|ref|XP_014040178.1|9.711e-2130.34PREDICTED: voltage-dependent T-type calcium channe... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9677rna9677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications