EWM21044.1, cds9629 (CDS) Nannochloropsis gaditana

Overview
NameEWM21044.1
Unique Namecds9629
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:83908..84241 +
Alignment locationKK037255.1:84393..84614 +
Alignment locationKK037255.1:85165..85633 +
Alignment locationKK037255.1:85737..85749 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21044.1
Productatp-binding sub-family g member 2d
Orig transcript idgnl|cribi|Naga_101482g1.953.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:83908..84241 +
KK037255.1supercontigKK037255.1:84393..84614 +
KK037255.1supercontigKK037255.1:85165..85633 +
KK037255.1supercontigKK037255.1:85737..85749 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013525ABC_2_trans
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
Homology
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585101059|gb|EWM21044.1| (atp-binding sub-family g member 2d [Nannochloropsis gaditana])

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM 345
            METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM
Sbjct:    1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM 345          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1183420081|gb|ORY44432.1| (P-loop containing nucleoside triphosphate hydrolase protein [Rhizoclosmatium globosum])

HSP 1 Score: 142.51 bits (358), Expect = 3.736e-34
Identity = 74/166 (44.58%), Postives = 112/166 (67.47%), Query Frame = 0
Query:  177 VVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGG--RCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
            ++ G   ++  G ++A+MGPSG+GKSTFLD+LAG+   G V G V+++    +    R    +V QED  +P+LTVRETL ++A LRL ES+  + ++ +V  +   LGLS V +T VGG G K  +SGGE+RR+S+GVE++  P+V++ DE T+GLDS  A+ V+
Sbjct:   44 IIDGVSGMIKPGHVLAIMGPSGAGKSTFLDILAGKSKSGIVTGSVLFDNIPMSPQLQRNLIGFVDQEDTLMPTLTVRETLMFSAQLRLPESISKEDKIKKVNEVMATLGLSHVANTRVGGHG-KRGISGGEKRRVSIGVELVTSPSVIVLDEPTSGLDSFNAIHVI 208          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585101819|gb|EWM21564.1| (abc transporter g family member 29 [Nannochloropsis gaditana])

HSP 1 Score: 142.124 bits (357), Expect = 1.055e-33
Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 0
Query:  188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVW--EAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
            GEM A+MG SG+GK+T LDVLAGRKT G + G+V +  +AG  +   C  +YVTQ++VH+   TVRETL +AALLR++E V P  R   V+ + GMLGL  V D  VG +  +  +SGG+ RRL++GVEII+LP ++  DE TTGLDS  + EV+  
Sbjct:  688 GEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPSPKLC--SYVTQDNVHIGCFTVRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDS-LRKGISGGQARRLTIGVEIINLPGMIFLDEPTTGLDSNISYEVMAA 841          

HSP 2 Score: 67.781 bits (164), Expect = 1.014e-8
Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 0
Query:    1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADI---PTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGF 160
            ++ + Q F  R ++V E ++  YS  ++ LA+ L  LP V   +++FL +++L+  +   P+ FF +  + +L   +      FL     A     ++A  + P+TF+ + S  GF V     P  W     + Y RW Y G+V   F+ R D A+ ++  GF
Sbjct:  256 LQAIPQLFTQRVLYVRERSAFLYSTFAYWLANALVNLPLVLLCHVIFLNVAYLLVQLDRSPSVFFYTQFVTMLNNVVAFTFAQFLA----ASAPSAQVALAIFPVTFLFLTSFAGFTVPLQDLPSGWIWASYISYPRWCYEGIVASQFSVRIDGASTMEYYGF 414          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|299473461|emb|CBN77858.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.354 bits (355), Expect = 2.271e-33
Identity = 89/184 (48.37%), Postives = 118/184 (64.13%), Query Frame = 0
Query:  167 EREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQ--GRVGGQVVWEA--GEQAGGRCRW------AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
             R+E      ++ G C ++  G+MMA+MGPSGSGK+T LD+L GRKT+  GR  G +V +   G + G   R       AYV Q++VH  SLTVR+TL +AA LR+  +V  + R  RV A+  MLGL  V +T+VG    +  +SGGE +RLSV VE IDLP +LL DE T+GLD+ TALEVL
Sbjct:  672 RRDESKREQQILRGVCGVVAPGQMMAIMGPSGSGKTTLLDLLGGRKTRSVGRQEGDIVVDGVFGREGGVVSRGSGVGGSAYVMQDNVHHASLTVRQTLQFAAKLRMCNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRG-ISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVL 854          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|643732127|gb|KDP39319.1| (hypothetical protein JCGZ_01076 [Jatropha curcas])

HSP 1 Score: 139.428 bits (350), Expect = 6.145e-33
Identity = 93/247 (37.65%), Postives = 139/247 (56.28%), Query Frame = 0
Query:   96 AYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
            AY+    + + +G  +  MVI +  P ++ + + V+Y     +      F++ P KA V+ ++  +   E +  +      ++ G    +G GE++A+MGPSGSGK+T L ++ GR T    G     E    A  + R  +VTQ+DV  P LTV ETL Y+A LRL  ++ PQ + ARVE +   LGL   R T VGG GF   +SGGER+R S+G EI+  P++LL DE T+GLDS +A  +L V
Sbjct:   40 AYLRNRYSEIDIGDDSLNMVIDAPLP-IFLKFEDVVYKARNSQA-----FSANPVKA-VVSKVSSQLSLEQDNYK-----KILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVEGRITYNEIPYNASVKRRIGFVTQDDVLFPQLTVEETLVYSAFLRLPGNMSPQQKYARVEIIIKELGLERCRQTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLEV 273          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1173819447|ref|XP_012071074.2| (ABC transporter G family member 26 [Jatropha curcas])

HSP 1 Score: 139.428 bits (350), Expect = 6.247e-33
Identity = 93/247 (37.65%), Postives = 139/247 (56.28%), Query Frame = 0
Query:   96 AYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
            AY+    + + +G  +  MVI +  P ++ + + V+Y     +      F++ P KA V+ ++  +   E +  +      ++ G    +G GE++A+MGPSGSGK+T L ++ GR T    G     E    A  + R  +VTQ+DV  P LTV ETL Y+A LRL  ++ PQ + ARVE +   LGL   R T VGG GF   +SGGER+R S+G EI+  P++LL DE T+GLDS +A  +L V
Sbjct:   44 AYLRNRYSEIDIGDDSLNMVIDAPLP-IFLKFEDVVYKARNSQA-----FSANPVKA-VVSKVSSQLSLEQDNYK-----KILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVEGRITYNEIPYNASVKRRIGFVTQDDVLFPQLTVEETLVYSAFLRLPGNMSPQQKYARVEIIIKELGLERCRQTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLEV 277          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|8099135|dbj|BAA90507.1| (unnamed protein product [Oryza sativa])

HSP 1 Score: 138.272 bits (347), Expect = 1.216e-32
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 0
Query:  187 SGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
             GE++AVMG SGSGKST LD LAGR  +G + G+V        G R R   AYV Q+DV  P LTVRETL +AA  RL  ++ P  + ARV+AL G LGL+   DT VG    +  +SGGERRR+S+G +I+  P +L  DE T+GLDSA+A  V+ V
Sbjct:   67 DGEVLAVMGASGSGKSTLLDALAGRIARGSLRGRVELNGEALHGRRVRAISAYVMQDDVLYPMLTVRETLMFAAEFRLPRALSPDKKRARVDALIGQLGLARAADTIVGDEAHRG-VSGGERRRVSIGTDIVHDPILLFLDEPTSGLDSASAFMVVQV 223          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1002268358|ref|XP_015638496.1| (PREDICTED: ABC transporter G family member 16 [Oryza sativa Japonica Group] >gi|222630004|gb|EEE62136.1| hypothetical protein OsJ_16923 [Oryza sativa Japonica Group] >gi|255675968|dbj|BAF16402.2| Os05g0120000 [Oryza sativa Japonica Group] >gi|937917088|dbj|BAS92006.1| Os05g0120000 [Oryza sativa Japonica Group])

HSP 1 Score: 138.272 bits (347), Expect = 1.347e-32
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 0
Query:  187 SGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
             GE++AVMG SGSGKST LD LAGR  +G + G+V        G R R   AYV Q+DV  P LTVRETL +AA  RL  ++ P  + ARV+AL G LGL+   DT VG    +  +SGGERRR+S+G +I+  P +L  DE T+GLDSA+A  V+ V
Sbjct:   67 DGEVLAVMGASGSGKSTLLDALAGRIARGSLRGRVELNGEALHGRRVRAISAYVMQDDVLYPMLTVRETLMFAAEFRLPRALSPDKKRARVDALIGQLGLARAADTIVGDEAHRG-VSGGERRRVSIGTDIVHDPILLFLDEPTSGLDSASAFMVVQV 223          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585107143|gb|EWM25382.1| (atp-binding cassette superfamily [Nannochloropsis gaditana])

HSP 1 Score: 139.043 bits (349), Expect = 1.450e-32
Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 0
Query:  188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW-AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLG 341
            G+M A+MG SG+GKST LD+LA RKT G + G+  +  G+      +W +YVTQ++VH+   TVRETL +AALLRL+E +  + R  R E +  MLGL +V D  VG A  K  +SGG+ RRLS+GVEI+ LP VL  DE TTGLDS  + EV+ 
Sbjct:  675 GQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEY-YIGGQAEKPSSKWCSYVTQDNVHISLFTVRETLEFAALLRLKEGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKG-ISGGQARRLSIGVEIMHLPDVLFLDEPTTGLDSQISHEVMS 827          

HSP 2 Score: 125.946 bits (315), Expect = 4.316e-28
Identity = 68/154 (44.16%), Postives = 101/154 (65.58%), Query Frame = 0
Query:  188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGG-RCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
            GE+  VMGPSG+GKST LD LAGR   G + G + +    ++       AYV Q+DVH+P+LTV ETL++AA LRL        R +R++A+  +LGL+    + VG AG +  +SGG+ +RLS+ VEI+++P+++  DE T+GLDS  A +V+
Sbjct:   41 GEIAFVMGPSGAGKSTLLDALAGRIKDGVMSGHIYFNGRPRSSDFYSNSAYVRQDDVHIPNLTVGETLFFAAQLRLGGEYTINERQSRIKAVSDLLGLNSCILSLVGDAGMRG-ISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVM 193          

HSP 3 Score: 67.0106 bits (162), Expect = 1.812e-8
Identity = 39/160 (24.38%), Postives = 82/160 (51.25%), Query Frame = 0
Query:    1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGF 160
            ++ + Q FF+  ++  E +++ YS  ++  A+ +  +P +  ++++F+ +S+ M  +  P     L  LL+ +L  L +++    + A     E+A  + P+ F+ +GS  GF +   + P  W+    + Y RW Y+ +++  F  R D+ AVL    F
Sbjct:  399 LQIIPQLFFFGVLYNRERSANVYSTFAYWAANAIVCVPLLLLSHVIFVEISYWMVGL-YPNAACHLFALLVTFLNNLISFYCAQCIAAISPSAEVALAMFPLVFLFLGSFAGFTIPLGELPPGWKWASYISYPRWTYQALIINEFQYRADRTAVLTFYSF 557          
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1150091336|ref|XP_020231351.1| (ABC transporter G family member 10 [Cajanus cajan])

HSP 1 Score: 136.732 bits (343), Expect = 3.890e-32
Identity = 79/157 (50.32%), Postives = 104/157 (66.24%), Query Frame = 0
Query:  188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
            GE+ A+ GPSG+GK+T L++LAGR    +V GQV+         R R    YVTQED   PSLTVRETL Y+A+LRL   VG +   ARV  L   LGL  V D+ +GG G  + +SGGERRR+S+GV+++  P V+L DE T+GLDSA+AL V+ +
Sbjct:   61 GEITAIAGPSGAGKTTLLEILAGRIPPCKVSGQVLVNHRPMDVNRFRRTSGYVTQEDALFPSLTVRETLMYSAMLRLP--VGRKVAAARVSELMKELGLDHVADSRIGG-GSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSL 214          
The following BLAST results are available for this feature:
BLAST of EWM21044.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101059|gb|EWM21044.1|0.000e+0100.00atp-binding sub-family g member 2d [Nannochloropsi... [more]
gi|1183420081|gb|ORY44432.1|3.736e-3444.58P-loop containing nucleoside triphosphate hydrolas... [more]
gi|585101819|gb|EWM21564.1|1.055e-3350.96abc transporter g family member 29 [Nannochloropsi... [more]
gi|299473461|emb|CBN77858.1|2.271e-3348.37conserved unknown protein [Ectocarpus siliculosus][more]
gi|643732127|gb|KDP39319.1|6.145e-3337.65hypothetical protein JCGZ_01076 [Jatropha curcas][more]
gi|1173819447|ref|XP_012071074.2|6.247e-3337.65ABC transporter G family member 26 [Jatropha curca... [more]
gi|8099135|dbj|BAA90507.1|1.216e-3250.63unnamed protein product [Oryza sativa][more]
gi|1002268358|ref|XP_015638496.1|1.347e-3250.63PREDICTED: ABC transporter G family member 16 [Ory... [more]
gi|585107143|gb|EWM25382.1|1.450e-3250.97atp-binding cassette superfamily [Nannochloropsis ... [more]
gi|1150091336|ref|XP_020231351.1|3.890e-3250.32ABC transporter G family member 10 [Cajanus cajan][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9660rna9660Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications