EWM21044.1, cds9629 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585101059|gb|EWM21044.1| (atp-binding sub-family g member 2d [Nannochloropsis gaditana]) HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0 Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query: 1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM 345
METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM
Sbjct: 1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGVGGM 345
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1183420081|gb|ORY44432.1| (P-loop containing nucleoside triphosphate hydrolase protein [Rhizoclosmatium globosum]) HSP 1 Score: 142.51 bits (358), Expect = 3.736e-34 Identity = 74/166 (44.58%), Postives = 112/166 (67.47%), Query Frame = 0
Query: 177 VVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGG--RCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
++ G ++ G ++A+MGPSG+GKSTFLD+LAG+ G V G V+++ + R +V QED +P+LTVRETL ++A LRL ES+ + ++ +V + LGLS V +T VGG G K +SGGE+RR+S+GVE++ P+V++ DE T+GLDS A+ V+
Sbjct: 44 IIDGVSGMIKPGHVLAIMGPSGAGKSTFLDILAGKSKSGIVTGSVLFDNIPMSPQLQRNLIGFVDQEDTLMPTLTVRETLMFSAQLRLPESISKEDKIKKVNEVMATLGLSHVANTRVGGHG-KRGISGGEKRRVSIGVELVTSPSVIVLDEPTSGLDSFNAIHVI 208
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585101819|gb|EWM21564.1| (abc transporter g family member 29 [Nannochloropsis gaditana]) HSP 1 Score: 142.124 bits (357), Expect = 1.055e-33 Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVW--EAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
GEM A+MG SG+GK+T LDVLAGRKT G + G+V + +AG + C +YVTQ++VH+ TVRETL +AALLR++E V P R V+ + GMLGL V D VG + + +SGG+ RRL++GVEII+LP ++ DE TTGLDS + EV+
Sbjct: 688 GEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPSPKLC--SYVTQDNVHIGCFTVRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDS-LRKGISGGQARRLTIGVEIINLPGMIFLDEPTTGLDSNISYEVMAA 841 HSP 2 Score: 67.781 bits (164), Expect = 1.014e-8 Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 0
Query: 1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADI---PTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGF 160
++ + Q F R ++V E ++ YS ++ LA+ L LP V +++FL +++L+ + P+ FF + + +L + FL A ++A + P+TF+ + S GF V P W + Y RW Y G+V F+ R D A+ ++ GF
Sbjct: 256 LQAIPQLFTQRVLYVRERSAFLYSTFAYWLANALVNLPLVLLCHVIFLNVAYLLVQLDRSPSVFFYTQFVTMLNNVVAFTFAQFLA----ASAPSAQVALAIFPVTFLFLTSFAGFTVPLQDLPSGWIWASYISYPRWCYEGIVASQFSVRIDGASTMEYYGF 414
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|299473461|emb|CBN77858.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 141.354 bits (355), Expect = 2.271e-33 Identity = 89/184 (48.37%), Postives = 118/184 (64.13%), Query Frame = 0
Query: 167 EREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQ--GRVGGQVVWEA--GEQAGGRCRW------AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
R+E ++ G C ++ G+MMA+MGPSGSGK+T LD+L GRKT+ GR G +V + G + G R AYV Q++VH SLTVR+TL +AA LR+ +V + R RV A+ MLGL V +T+VG + +SGGE +RLSV VE IDLP +LL DE T+GLD+ TALEVL
Sbjct: 672 RRDESKREQQILRGVCGVVAPGQMMAIMGPSGSGKTTLLDLLGGRKTRSVGRQEGDIVVDGVFGREGGVVSRGSGVGGSAYVMQDNVHHASLTVRQTLQFAAKLRMCNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRG-ISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVL 854
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|643732127|gb|KDP39319.1| (hypothetical protein JCGZ_01076 [Jatropha curcas]) HSP 1 Score: 139.428 bits (350), Expect = 6.145e-33 Identity = 93/247 (37.65%), Postives = 139/247 (56.28%), Query Frame = 0
Query: 96 AYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
AY+ + + +G + MVI + P ++ + + V+Y + F++ P KA V+ ++ + E + + ++ G +G GE++A+MGPSGSGK+T L ++ GR T G E A + R +VTQ+DV P LTV ETL Y+A LRL ++ PQ + ARVE + LGL R T VGG GF +SGGER+R S+G EI+ P++LL DE T+GLDS +A +L V
Sbjct: 40 AYLRNRYSEIDIGDDSLNMVIDAPLP-IFLKFEDVVYKARNSQA-----FSANPVKA-VVSKVSSQLSLEQDNYK-----KILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVEGRITYNEIPYNASVKRRIGFVTQDDVLFPQLTVEETLVYSAFLRLPGNMSPQQKYARVEIIIKELGLERCRQTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLEV 273
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1173819447|ref|XP_012071074.2| (ABC transporter G family member 26 [Jatropha curcas]) HSP 1 Score: 139.428 bits (350), Expect = 6.247e-33 Identity = 93/247 (37.65%), Postives = 139/247 (56.28%), Query Frame = 0
Query: 96 AYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGFEFKFEGEREEIGTCFAVVLGWCLLLGSGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
AY+ + + +G + MVI + P ++ + + V+Y + F++ P KA V+ ++ + E + + ++ G +G GE++A+MGPSGSGK+T L ++ GR T G E A + R +VTQ+DV P LTV ETL Y+A LRL ++ PQ + ARVE + LGL R T VGG GF +SGGER+R S+G EI+ P++LL DE T+GLDS +A +L V
Sbjct: 44 AYLRNRYSEIDIGDDSLNMVIDAPLP-IFLKFEDVVYKARNSQA-----FSANPVKA-VVSKVSSQLSLEQDNYK-----KILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVEGRITYNEIPYNASVKRRIGFVTQDDVLFPQLTVEETLVYSAFLRLPGNMSPQQKYARVEIIIKELGLERCRQTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLEV 277
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|8099135|dbj|BAA90507.1| (unnamed protein product [Oryza sativa]) HSP 1 Score: 138.272 bits (347), Expect = 1.216e-32 Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 0
Query: 187 SGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
GE++AVMG SGSGKST LD LAGR +G + G+V G R R AYV Q+DV P LTVRETL +AA RL ++ P + ARV+AL G LGL+ DT VG + +SGGERRR+S+G +I+ P +L DE T+GLDSA+A V+ V
Sbjct: 67 DGEVLAVMGASGSGKSTLLDALAGRIARGSLRGRVELNGEALHGRRVRAISAYVMQDDVLYPMLTVRETLMFAAEFRLPRALSPDKKRARVDALIGQLGLARAADTIVGDEAHRG-VSGGERRRVSIGTDIVHDPILLFLDEPTSGLDSASAFMVVQV 223
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1002268358|ref|XP_015638496.1| (PREDICTED: ABC transporter G family member 16 [Oryza sativa Japonica Group] >gi|222630004|gb|EEE62136.1| hypothetical protein OsJ_16923 [Oryza sativa Japonica Group] >gi|255675968|dbj|BAF16402.2| Os05g0120000 [Oryza sativa Japonica Group] >gi|937917088|dbj|BAS92006.1| Os05g0120000 [Oryza sativa Japonica Group]) HSP 1 Score: 138.272 bits (347), Expect = 1.347e-32 Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 0
Query: 187 SGEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
GE++AVMG SGSGKST LD LAGR +G + G+V G R R AYV Q+DV P LTVRETL +AA RL ++ P + ARV+AL G LGL+ DT VG + +SGGERRR+S+G +I+ P +L DE T+GLDSA+A V+ V
Sbjct: 67 DGEVLAVMGASGSGKSTLLDALAGRIARGSLRGRVELNGEALHGRRVRAISAYVMQDDVLYPMLTVRETLMFAAEFRLPRALSPDKKRARVDALIGQLGLARAADTIVGDEAHRG-VSGGERRRVSIGTDIVHDPILLFLDEPTSGLDSASAFMVVQV 223
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|585107143|gb|EWM25382.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 139.043 bits (349), Expect = 1.450e-32 Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 0
Query: 188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW-AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLG 341
G+M A+MG SG+GKST LD+LA RKT G + G+ + G+ +W +YVTQ++VH+ TVRETL +AALLRL+E + + R R E + MLGL +V D VG A K +SGG+ RRLS+GVEI+ LP VL DE TTGLDS + EV+
Sbjct: 675 GQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEY-YIGGQAEKPSSKWCSYVTQDNVHISLFTVRETLEFAALLRLKEGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKG-ISGGQARRLSIGVEIMHLPDVLFLDEPTTGLDSQISHEVMS 827 HSP 2 Score: 125.946 bits (315), Expect = 4.316e-28 Identity = 68/154 (44.16%), Postives = 101/154 (65.58%), Query Frame = 0
Query: 188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGG-RCRWAYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVL 340
GE+ VMGPSG+GKST LD LAGR G + G + + ++ AYV Q+DVH+P+LTV ETL++AA LRL R +R++A+ +LGL+ + VG AG + +SGG+ +RLS+ VEI+++P+++ DE T+GLDS A +V+
Sbjct: 41 GEIAFVMGPSGAGKSTLLDALAGRIKDGVMSGHIYFNGRPRSSDFYSNSAYVRQDDVHIPNLTVGETLFFAAQLRLGGEYTINERQSRIKAVSDLLGLNSCILSLVGDAGMRG-ISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVM 193 HSP 3 Score: 67.0106 bits (162), Expect = 1.812e-8 Identity = 39/160 (24.38%), Postives = 82/160 (51.25%), Query Frame = 0
Query: 1 METLSQYFFWRPVFVHELNSHTYSPLSFLLASPLTLLPWVGSAYLLFLFLSFLMADIPTPFFPSFLLPLLLIYLVLLTTYFLTLGLCARLKRPELAYVLTPITFVIMGSLTGFMVIPSQTPFLWQQIQRVLYTRWAYRGVVLLLFASRPDKAAVLDRLGF 160
++ + Q FF+ ++ E +++ YS ++ A+ + +P + ++++F+ +S+ M + P L LL+ +L L +++ + A E+A + P+ F+ +GS GF + + P W+ + Y RW Y+ +++ F R D+ AVL F
Sbjct: 399 LQIIPQLFFFGVLYNRERSANVYSTFAYWAANAIVCVPLLLLSHVIFVEISYWMVGL-YPNAACHLFALLVTFLNNLISFYCAQCIAAISPSAEVALAMFPLVFLFLGSFAGFTIPLGELPPGWKWASYISYPRWTYQALIINEFQYRADRTAVLTFYSF 557
BLAST of EWM21044.1 vs. NCBI_GenBank
Match: gi|1150091336|ref|XP_020231351.1| (ABC transporter G family member 10 [Cajanus cajan]) HSP 1 Score: 136.732 bits (343), Expect = 3.890e-32 Identity = 79/157 (50.32%), Postives = 104/157 (66.24%), Query Frame = 0
Query: 188 GEMMAVMGPSGSGKSTFLDVLAGRKTQGRVGGQVVWEAGEQAGGRCRW--AYVTQEDVHLPSLTVRETLWYAALLRLEESVGPQTRLARVEALEGMLGLSEVRDTSVGGAGFKNPLSGGERRRLSVGVEIIDLPTVLLGDEVTTGLDSATALEVLGV 342
GE+ A+ GPSG+GK+T L++LAGR +V GQV+ R R YVTQED PSLTVRETL Y+A+LRL VG + ARV L LGL V D+ +GG G + +SGGERRR+S+GV+++ P V+L DE T+GLDSA+AL V+ +
Sbjct: 61 GEITAIAGPSGAGKTTLLEILAGRIPPCKVSGQVLVNHRPMDVNRFRRTSGYVTQEDALFPSLTVRETLMYSAMLRLP--VGRKVAAARVSELMKELGLDHVADSRIGG-GSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSL 214 The following BLAST results are available for this feature:
BLAST of EWM21044.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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