EWM21056.1, cds9617 (CDS) Nannochloropsis gaditana

Overview
NameEWM21056.1
Unique Namecds9617
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:53149..53637 +

Link to JBrowse

Properties
Property NameValue
Start range53149
Start range.
Protein idEWM21056.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102995g1.5011.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:53149..53637 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM21056.1 vs. NCBI_GenBank
Match: gi|585101077|gb|EWM21056.1| (hypothetical protein Naga_102995g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 308.145 bits (788), Expect = 7.511e-106
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 RKGLCEKVTTHVTRLLTQSTPSPSPPPSLSPDSLAVLLKLEALLQALGTEDMRVLSVLAPKYDQEGDRATVEAALRRVEVGGGFRLGLSNVVGGQGGALVTLTLTLTLTLTLTLTLTLILTLTLTLTLTLLVDVPCTGGGGRAQYHPFLPVDPLRTFSVVGA 162
            RKGLCEKVTTHVTRLLTQSTPSPSPPPSLSPDSLAVLLKLEALLQALGTEDMRVLSVLAPKYDQEGDRATVEAALRRVEVGGGFRLGLSNVVGGQGGALVTLTLTLTLTLTLTLTLTLILTLTLTLTLTLLVDVPCTGGGGRAQYHPFLPVDPLRTFSVVGA
Sbjct:    1 RKGLCEKVTTHVTRLLTQSTPSPSPPPSLSPDSLAVLLKLEALLQALGTEDMRVLSVLAPKYDQEGDRATVEAALRRVEVGGGFRLGLSNVVGGQGGALVTLTLTLTLTLTLTLTLTLILTLTLTLTLTLLVDVPCTGGGGRAQYHPFLPVDPLRTFSVVGA 162
The following BLAST results are available for this feature:
BLAST of EWM21056.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101077|gb|EWM21056.1|7.511e-106100.00hypothetical protein Naga_102995g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9648rna9648Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications