EWM21073.1, cds9600 (CDS) Nannochloropsis gaditana

Overview
NameEWM21073.1
Unique Namecds9600
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:11405..11482 +
Alignment locationKK037255.1:11524..11616 +
Alignment locationKK037255.1:11877..11937 +
Alignment locationKK037255.1:12271..12371 +
Alignment locationKK037255.1:12688..12777 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21073.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101583g1.8470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:11405..11482 +
KK037255.1supercontigKK037255.1:11524..11616 +
KK037255.1supercontigKK037255.1:11877..11937 +
KK037255.1supercontigKK037255.1:12271..12371 +
KK037255.1supercontigKK037255.1:12688..12777 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21073.1 vs. NCBI_GenBank
Match: gi|585101113|gb|EWM21073.1| (hypothetical protein Naga_101583g1 [Nannochloropsis gaditana])

HSP 1 Score: 289.271 bits (739), Expect = 4.114e-99
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MEARQRKNLLGEDPGPALRSGRKDGLVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE 140
            MEARQRKNLLGEDPGPALRSGRKDGLVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE
Sbjct:    1 MEARQRKNLLGEDPGPALRSGRKDGLVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE 140
[Close]
BLAST of EWM21073.1 vs. NCBI_GenBank
Match: gi|553176639|ref|XP_005852387.1| (hypothetical protein NGA_0727900 [Nannochloropsis gaditana CCMP526] >gi|422296146|gb|EKU23445.1| hypothetical protein NGA_0727900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.654 bits (605), Expect = 1.788e-78
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 
Query:   24 DGLVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE 140
            D  VQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE
Sbjct:   35 DPQVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE 151
The following BLAST results are available for this feature:
BLAST of EWM21073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101113|gb|EWM21073.1|4.114e-99100.00hypothetical protein Naga_101583g1 [Nannochloropsi... [more]
gi|553176639|ref|XP_005852387.1|1.788e-7898.29hypothetical protein NGA_0727900 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9631rna9631Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications