EWM21084.1, cds9590 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|585101139|gb|EWM21084.1| (formate-tetrahydrofolate ligase [Nannochloropsis gaditana]) HSP 1 Score: 209.149 bits (531), Expect = 1.651e-68 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF Sbjct: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|223997474|ref|XP_002288410.1| (formate-tetrahydrofolate ligase [Thalassiosira pseudonana CCMP1335] >gi|220975518|gb|EED93846.1| formate-tetrahydrofolate ligase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 173.711 bits (439), Expect = 5.410e-49 Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +YG DGV++SE+AE+Q+K YE++GFG+LP+C+AKTQYS SCDA+AKGVPTGF++ VREIR+C+GAGFLY + GDI TIPGLPTRPGFYDVDID TG+++GLF Sbjct: 551 IYGADGVDFSELAEQQMKQYESSGFGNLPICIAKTQYSFSCDASAKGVPTGFRIFVREIRSCIGAGFLYPICGDIQTIPGLPTRPGFYDVDIDVKTGQVIGLF 653
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|397605931|gb|EJK59156.1| (hypothetical protein THAOC_20657 [Thalassiosira oceanica]) HSP 1 Score: 171.785 bits (434), Expect = 2.451e-48 Identity = 74/103 (71.84%), Postives = 93/103 (90.29%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +YG DGV++SE+AE+QI+ YE++GFG+LP+C+AKTQYS SCD AKGVP GF++ VREIR+CVGAGFLY + GDIMTIPGLPTRPGFYDVDID +TG+++GLF Sbjct: 547 IYGADGVDFSELAEQQIRQYESSGFGNLPICIAKTQYSFSCDPKAKGVPKGFRIYVREIRSCVGAGFLYPICGDIMTIPGLPTRPGFYDVDIDTSTGQVLGLF 649
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1210513840|dbj|GAX27139.1| (methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [Fistulifera solaris]) HSP 1 Score: 158.303 bits (399), Expect = 2.863e-43 Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 MY DGV+YS A+ QI+ YE +GFGHLP+C+AKTQYS SCDA+AKG PTGF+V VRE+R+CVGAGFLY + GDIMTIPGL TRPGF DVDI +G +VGLF Sbjct: 547 MYRADGVDYSPTAQAQIEQYEKSGFGHLPICIAKTQYSFSCDASAKGAPTGFRVPVREVRSCVGAGFLYPICGDIMTIPGLSTRPGFMDVDIS-ESGEVVGLF 648
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|219127483|ref|XP_002183964.1| (fomate-tetrahydrofolate ligase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404687|gb|EEC44633.1| fomate-tetrahydrofolate ligase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 157.918 bits (398), Expect = 4.198e-43 Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +Y DGV++S A Q++ YEA+GFG+LP+C+AKTQYS SCD +AKG PTGF+V VREIR+CVGAGFLY + GDIMTIPGLPTRPGFYDVDID G +VGLF Sbjct: 565 IYRADGVDFSNTARAQMEKYEASGFGNLPICIAKTQYSFSCDPSAKGAPTGFRVPVREIRSCVGAGFLYPICGDIMTIPGLPTRPGFYDVDID-ENGGVVGLF 666
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1210513199|dbj|GAX27596.1| (methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [Fistulifera solaris]) HSP 1 Score: 157.532 bits (397), Expect = 4.661e-43 Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 MY DGV+YS A+ QI+ YE +GFGHLP+C+AKTQYS SCDA+AKG PTGF+V VRE+R+CVGAGFLY + GDIMTIPGL TRPGF DVDI +G ++GLF Sbjct: 548 MYRADGVDYSPTAQAQIEQYEKSGFGHLPICIAKTQYSFSCDASAKGAPTGFRVPVREVRSCVGAGFLYPICGDIMTIPGLSTRPGFMDVDIS-ESGEVIGLF 649
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|299470406|emb|CBN80167.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 150.984 bits (380), Expect = 1.155e-40 Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 MY VE+S AEE++ YE AG+G LP+CVAKTQYSLS D +AKG P+G V VR++RA VGAGF+Y L GDI TIPGLPTRPGFYDVDIDF TGR+VGLF Sbjct: 540 MYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPTRPGFYDVDIDFGTGRVVGLF 642
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|695426705|ref|XP_009529488.1| (hypothetical protein PHYSODRAFT_333950 [Phytophthora sojae] >gi|348675921|gb|EGZ15739.1| hypothetical protein PHYSODRAFT_333950 [Phytophthora sojae]) HSP 1 Score: 149.828 bits (377), Expect = 4.390e-40 Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +YG DGVE+SE A++++ Y G+G+LP+C AKT SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D TG+++GLF Sbjct: 576 IYGADGVEFSEEAKKKLAVYSERGYGNLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYVLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 678
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1214710162|gb|OWZ21277.1| (Formate-tetrahydrofolate ligase [Phytophthora megakarya]) HSP 1 Score: 148.673 bits (374), Expect = 8.089e-40 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +YG DGVE+SE A++++ Y G+G LP+C AKT SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D TG+++GLF Sbjct: 536 IYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 638
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|970632258|gb|KUF78594.1| (Formate--tetrahydrofolate ligase [Phytophthora nicotianae]) HSP 1 Score: 148.673 bits (374), Expect = 8.423e-40 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0 Query: 1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103 +YG DGVE+SE A++++ Y G+G LP+C AKT SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D TG+++GLF Sbjct: 536 IYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 638 The following BLAST results are available for this feature:
BLAST of EWM21084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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