EWM21084.1, cds9590 (CDS) Nannochloropsis gaditana

Overview
NameEWM21084.1
Unique Namecds9590
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:300638..300776 -
Alignment locationKK037254.1:300317..300489 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21084.1
Productformate-tetrahydrofolate ligase
Orig transcript idgnl|cribi|Naga_101504g3.3536.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:300638..300776 -
KK037254.1supercontigKK037254.1:300317..300489 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004329formate-tetrahydrofolate ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009396folic acid-containing compound biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000559Formate_THF_ligase
Homology
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|585101139|gb|EWM21084.1| (formate-tetrahydrofolate ligase [Nannochloropsis gaditana])

HSP 1 Score: 209.149 bits (531), Expect = 1.651e-68
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF
Sbjct:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|223997474|ref|XP_002288410.1| (formate-tetrahydrofolate ligase [Thalassiosira pseudonana CCMP1335] >gi|220975518|gb|EED93846.1| formate-tetrahydrofolate ligase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 173.711 bits (439), Expect = 5.410e-49
Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +YG DGV++SE+AE+Q+K YE++GFG+LP+C+AKTQYS SCDA+AKGVPTGF++ VREIR+C+GAGFLY + GDI TIPGLPTRPGFYDVDID  TG+++GLF
Sbjct:  551 IYGADGVDFSELAEQQMKQYESSGFGNLPICIAKTQYSFSCDASAKGVPTGFRIFVREIRSCIGAGFLYPICGDIQTIPGLPTRPGFYDVDIDVKTGQVIGLF 653          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|397605931|gb|EJK59156.1| (hypothetical protein THAOC_20657 [Thalassiosira oceanica])

HSP 1 Score: 171.785 bits (434), Expect = 2.451e-48
Identity = 74/103 (71.84%), Postives = 93/103 (90.29%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +YG DGV++SE+AE+QI+ YE++GFG+LP+C+AKTQYS SCD  AKGVP GF++ VREIR+CVGAGFLY + GDIMTIPGLPTRPGFYDVDID +TG+++GLF
Sbjct:  547 IYGADGVDFSELAEQQIRQYESSGFGNLPICIAKTQYSFSCDPKAKGVPKGFRIYVREIRSCVGAGFLYPICGDIMTIPGLPTRPGFYDVDIDTSTGQVLGLF 649          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1210513840|dbj|GAX27139.1| (methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [Fistulifera solaris])

HSP 1 Score: 158.303 bits (399), Expect = 2.863e-43
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            MY  DGV+YS  A+ QI+ YE +GFGHLP+C+AKTQYS SCDA+AKG PTGF+V VRE+R+CVGAGFLY + GDIMTIPGL TRPGF DVDI   +G +VGLF
Sbjct:  547 MYRADGVDYSPTAQAQIEQYEKSGFGHLPICIAKTQYSFSCDASAKGAPTGFRVPVREVRSCVGAGFLYPICGDIMTIPGLSTRPGFMDVDIS-ESGEVVGLF 648          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|219127483|ref|XP_002183964.1| (fomate-tetrahydrofolate ligase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404687|gb|EEC44633.1| fomate-tetrahydrofolate ligase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 157.918 bits (398), Expect = 4.198e-43
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +Y  DGV++S  A  Q++ YEA+GFG+LP+C+AKTQYS SCD +AKG PTGF+V VREIR+CVGAGFLY + GDIMTIPGLPTRPGFYDVDID   G +VGLF
Sbjct:  565 IYRADGVDFSNTARAQMEKYEASGFGNLPICIAKTQYSFSCDPSAKGAPTGFRVPVREIRSCVGAGFLYPICGDIMTIPGLPTRPGFYDVDID-ENGGVVGLF 666          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1210513199|dbj|GAX27596.1| (methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [Fistulifera solaris])

HSP 1 Score: 157.532 bits (397), Expect = 4.661e-43
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            MY  DGV+YS  A+ QI+ YE +GFGHLP+C+AKTQYS SCDA+AKG PTGF+V VRE+R+CVGAGFLY + GDIMTIPGL TRPGF DVDI   +G ++GLF
Sbjct:  548 MYRADGVDYSPTAQAQIEQYEKSGFGHLPICIAKTQYSFSCDASAKGAPTGFRVPVREVRSCVGAGFLYPICGDIMTIPGLSTRPGFMDVDIS-ESGEVIGLF 649          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|299470406|emb|CBN80167.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 150.984 bits (380), Expect = 1.155e-40
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            MY    VE+S  AEE++  YE AG+G LP+CVAKTQYSLS D +AKG P+G  V VR++RA VGAGF+Y L GDI TIPGLPTRPGFYDVDIDF TGR+VGLF
Sbjct:  540 MYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPTRPGFYDVDIDFGTGRVVGLF 642          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|695426705|ref|XP_009529488.1| (hypothetical protein PHYSODRAFT_333950 [Phytophthora sojae] >gi|348675921|gb|EGZ15739.1| hypothetical protein PHYSODRAFT_333950 [Phytophthora sojae])

HSP 1 Score: 149.828 bits (377), Expect = 4.390e-40
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +YG DGVE+SE A++++  Y   G+G+LP+C AKT  SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D  TG+++GLF
Sbjct:  576 IYGADGVEFSEEAKKKLAVYSERGYGNLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYVLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 678          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|1214710162|gb|OWZ21277.1| (Formate-tetrahydrofolate ligase [Phytophthora megakarya])

HSP 1 Score: 148.673 bits (374), Expect = 8.089e-40
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +YG DGVE+SE A++++  Y   G+G LP+C AKT  SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D  TG+++GLF
Sbjct:  536 IYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 638          
BLAST of EWM21084.1 vs. NCBI_GenBank
Match: gi|970632258|gb|KUF78594.1| (Formate--tetrahydrofolate ligase [Phytophthora nicotianae])

HSP 1 Score: 148.673 bits (374), Expect = 8.423e-40
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 MYGGDGVEYSEVAEEQIKAYEAAGFGHLPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGLF 103
            +YG DGVE+SE A++++  Y   G+G LP+C AKT  SLS D TAKGVPTGF V VR+IRA VGAGF+Y L GD+MT+PGLPTRPGFYDVD+D  TG+++GLF
Sbjct:  536 IYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTDPTAKGVPTGFSVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGLF 638          
The following BLAST results are available for this feature:
BLAST of EWM21084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101139|gb|EWM21084.1|1.651e-68100.00formate-tetrahydrofolate ligase [Nannochloropsis g... [more]
gi|223997474|ref|XP_002288410.1|5.410e-4971.84formate-tetrahydrofolate ligase [Thalassiosira pse... [more]
gi|397605931|gb|EJK59156.1|2.451e-4871.84hypothetical protein THAOC_20657 [Thalassiosira oc... [more]
gi|1210513840|dbj|GAX27139.1|2.863e-4369.90methylenetetrahydrofolate dehydrogenase (NADP+) / ... [more]
gi|219127483|ref|XP_002183964.1|4.198e-4369.90fomate-tetrahydrofolate ligase [Phaeodactylum tric... [more]
gi|1210513199|dbj|GAX27596.1|4.661e-4368.93methylenetetrahydrofolate dehydrogenase (NADP+) / ... [more]
gi|299470406|emb|CBN80167.1|1.155e-4068.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|695426705|ref|XP_009529488.1|4.390e-4065.05hypothetical protein PHYSODRAFT_333950 [Phytophtho... [more]
gi|1214710162|gb|OWZ21277.1|8.089e-4065.05Formate-tetrahydrofolate ligase [Phytophthora mega... [more]
gi|970632258|gb|KUF78594.1|8.423e-4065.05Formate--tetrahydrofolate ligase [Phytophthora nic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9621rna9621Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications