EWM21088.1, cds9585 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21088.1
Unique Name	cds9585
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037254.1:291814..291863 -
Alignment location	KK037254.1:291083..291704 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21088.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101238g2.4627.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:291814..291863 -
KK037254.1	supercontig	KK037254.1:291083..291704 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21088.1 vs. NCBI_GenBank
Match: gi|585101146|gb|EWM21088.1| (hypothetical protein Naga_101238g2 [Nannochloropsis gaditana])

HSP 1 Score: 449.129 bits (1154), Expect = 1.236e-159
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0

Query:    1 MRQPRLHPQHHGGLLPRAANLQLRRLRGEGAHHHPVPGLFRTFLGRGHGEKRGGRIEDDRGLQGHDGIGGKREGRGGEGRRTSLALKDGRKTGQLHSVRMIARYRVEEAFLGGSVGGGLCACISHGRLVSLACGDSLEREDKVRQRGSCIAASKYISNCTLTISPYRAPQPGVAFFFVGLNALISKSPLILPTEKSLQSSFSFGMFAFGYLSIEMRNFHNTQQ 223
            MRQPRLHPQHHGGLLPRAANLQLRRLRGEGAHHHPVPGLFRTFLGRGHGEKRGGRIEDDRGLQGHDGIGGKREGRGGEGRRTSLALKDGRKTGQLHSVRMIARYRVEEAFLGGSVGGGLCACISHGRLVSLACGDSLEREDKVRQRGSCIAASKYISNCTLTISPYRAPQPGVAFFFVGLNALISKSPLILPTEKSLQSSFSFGMFAFGYLSIEMRNFHNTQQ
Sbjct:    1 MRQPRLHPQHHGGLLPRAANLQLRRLRGEGAHHHPVPGLFRTFLGRGHGEKRGGRIEDDRGLQGHDGIGGKREGRGGEGRRTSLALKDGRKTGQLHSVRMIARYRVEEAFLGGSVGGGLCACISHGRLVSLACGDSLEREDKVRQRGSCIAASKYISNCTLTISPYRAPQPGVAFFFVGLNALISKSPLILPTEKSLQSSFSFGMFAFGYLSIEMRNFHNTQQ 223

The following BLAST results are available for this feature:

BLAST of EWM21088.1 vs. NCBI_GenBank

BLAST of EWM21088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101146\|gb\|EWM21088.1\|	1.236e-159	100.00	hypothetical protein Naga_101238g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9616	rna9616	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications