EWM21093.1, cds9578 (CDS) Nannochloropsis gaditana

Overview
NameEWM21093.1
Unique Namecds9578
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:279185..279258 -
Alignment locationKK037254.1:278774..278923 -
Alignment locationKK037254.1:278451..278676 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21093.1
Productubiquitin-conjugating enzyme e2 27
Orig transcript idgnl|cribi|Naga_100776g4.10774.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:279185..279258 -
KK037254.1supercontigKK037254.1:278774..278923 -
KK037254.1supercontigKK037254.1:278451..278676 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|585101155|gb|EWM21093.1| (ubiquitin-conjugating enzyme e2 27 [Nannochloropsis gaditana])

HSP 1 Score: 306.22 bits (783), Expect = 2.119e-105
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKDQKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQPVRGGREGGRERGREAGRKGRVTCMGRAGGPWP 149
            MGDFSRIQKELRECAKDQKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQPVRGGREGGRERGREAGRKGRVTCMGRAGGPWP
Sbjct:    1 MGDFSRIQKELRECAKDQKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQPVRGGREGGRERGREAGRKGRVTCMGRAGGPWP 149          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|1109229468|ref|XP_019189451.1| (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Ipomoea nil])

HSP 1 Score: 182.956 bits (463), Expect = 4.038e-56
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M D  R+QKEL+EC +D Q SG+  SP G SL HLSGTI GP GTPYE G FKIDI +P  YPFEPPKMKF TK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  P+P
Sbjct:    1 MVDLGRVQKELQECNRDVQVSGIKVSPRGDSLTHLSGTIPGPIGTPYEGGTFKIDITLPDGYPFEPPKMKFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSIQALLSAPEP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|298708013|emb|CBJ30375.1| (ubiquitin-conjugating enzyme 1 [Ectocarpus siliculosus])

HSP 1 Score: 186.037 bits (471), Expect = 3.199e-55
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 0
Query:    2 GDFSRIQKELRECAKDQKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            GD  RI+KEL ECA+D  SGVTA P G SL  L GTI GP GTP+E G F I+I IP+ YPFEPPKMKF TKIWHPNISSQ+GAICLDILKDQWSPALTIKTAL+SLQAL+C+P+P
Sbjct:  164 GDAGRIRKELAECARDTDSGVTAVPKGDSLARLEGTILGPVGTPFEGGTFLINIDIPSGYPFEPPKMKFATKIWHPNISSQTGAICLDILKDQWSPALTIKTALLSLQALMCSPEP 279          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|567888786|ref|XP_006436915.1| (hypothetical protein CICLE_v10032815mg [Citrus clementina] >gi|568863381|ref|XP_006485127.1| PREDICTED: ubiquitin-conjugating enzyme E2 27 [Citrus sinensis] >gi|557539111|gb|ESR50155.1| hypothetical protein CICLE_v10032815mg [Citrus clementina] >gi|641825234|gb|KDO44511.1| hypothetical protein CISIN_1g029412mg [Citrus sinensis])

HSP 1 Score: 180.644 bits (457), Expect = 3.709e-55
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DFSR+QKEL+EC+KD + SG+  +PV  +L HL+G I GP GTPYE G F++DI +P  YPFEPPKM FVTK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  P P
Sbjct:    1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|1035901038|gb|OAY30638.1| (hypothetical protein MANES_14G047100 [Manihot esculenta])

HSP 1 Score: 179.874 bits (455), Expect = 7.381e-55
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DF+R+QKEL+EC++D + SG+T +P   +L  L+GTI GP GTPYE G+F+IDI +P  YPFEPPKM+F TK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  PQP
Sbjct:    1 MIDFARVQKELQECSRDIEASGITVTPKSENLARLTGTIPGPIGTPYEGGIFQIDISLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|449440514|ref|XP_004138029.1| (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Cucumis sativus] >gi|700208355|gb|KGN63451.1| hypothetical protein Csa_1G000740 [Cucumis sativus])

HSP 1 Score: 179.489 bits (454), Expect = 1.070e-54
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DF+R+QKEL+EC KD + SG+  +P   SL+HL GTI GP  TPYE G+F+IDI +P  YPFEPPKM+F TK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  PQP
Sbjct:    1 MIDFARVQKELQECTKDIEASGIRVTPKSDSLSHLLGTIPGPISTPYEGGIFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|1035918421|gb|OAY48012.1| (hypothetical protein MANES_06G124300 [Manihot esculenta])

HSP 1 Score: 179.104 bits (453), Expect = 1.469e-54
Identity = 82/118 (69.49%), Postives = 99/118 (83.90%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DFSR+QKEL+EC++D + SG+  +P   +L+ L+GTI GP GTPYE G F+IDI +P  YPFEPPKM+F TK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  PQP
Sbjct:    1 MIDFSRVQKELQECSRDIESSGIRVTPKSENLSRLTGTIPGPMGTPYEGGTFQIDISLPDGYPFEPPKMQFTTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSIQALLSAPQP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|567181034|ref|XP_006402053.1| (hypothetical protein EUTSA_v10014747mg [Eutrema salsugineum] >gi|557103143|gb|ESQ43506.1| hypothetical protein EUTSA_v10014747mg [Eutrema salsugineum])

HSP 1 Score: 178.718 bits (452), Expect = 2.232e-54
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKDQK-SGVTASPVGSSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DFSR+QKEL++C KD+  SG+  SP   +L  L+GTI GP GTPYE G F+IDI IP  YPFEPPKM+F TK+WHPNISSQSGAICLD+LKDQWSPALT+KTAL+S+QALL TP+P
Sbjct:    1 MIDFSRVQKELQDCEKDKDASGIRVSPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITIPEGYPFEPPKMQFSTKVWHPNISSQSGAICLDVLKDQWSPALTLKTALVSIQALLSTPEP 118          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|645268452|ref|XP_008239533.1| (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Prunus mume] >gi|1162559124|ref|XP_020420027.1| ubiquitin-conjugating enzyme E2 27 [Prunus persica] >gi|1139773416|gb|ONI07888.1| hypothetical protein PRUPE_5G145200 [Prunus persica])

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-54
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVGS-SLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DF+R+QKEL+EC++D ++SG+  SP G  SL  L GTI GP GTPYE G F+IDI +P +YPFEPPKMKF TK+WHPNISSQSGAICLDILKDQWSPALT+KTAL+S+QALL  PQP
Sbjct:    1 MVDFARVQKELQECSRDVERSGIKVSPKGDGSLARLIGTIPGPTGTPYEGGTFQIDIALPDAYPFEPPKMKFTTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQP 119          
BLAST of EWM21093.1 vs. NCBI_GenBank
Match: gi|848884945|ref|XP_012842730.1| (PREDICTED: ubiquitin-conjugating enzyme E2 27 [Erythranthe guttata] >gi|604326946|gb|EYU32921.1| hypothetical protein MIMGU_mgv1a014267mg [Erythranthe guttata])

HSP 1 Score: 178.333 bits (451), Expect = 2.918e-54
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 0
Query:    1 MGDFSRIQKELRECAKD-QKSGVTASPVG-SSLNHLSGTITGPDGTPYEKGVFKIDIQIPTSYPFEPPKMKFVTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQP 117
            M DF+R+QKEL+EC +D Q SG+  SP+  ++L HL GTI GP GTPYE G FKIDI +P  YPFEPPKMKF TK+WHPN+SSQSGAICLDILKDQWSPALT+KTAL+S+QALL  P+P
Sbjct:    1 MVDFARVQKELQECNRDFQVSGIKVSPMAETNLAHLLGTIPGPLGTPYEGGTFKIDITLPDGYPFEPPKMKFATKVWHPNVSSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPEP 119          
The following BLAST results are available for this feature:
BLAST of EWM21093.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101155|gb|EWM21093.1|2.119e-105100.00ubiquitin-conjugating enzyme e2 27 [Nannochloropsi... [more]
gi|1109229468|ref|XP_019189451.1|4.038e-5673.73PREDICTED: ubiquitin-conjugating enzyme E2 27 [Ipo... [more]
gi|298708013|emb|CBJ30375.1|3.199e-5575.00ubiquitin-conjugating enzyme 1 [Ectocarpus silicul... [more]
gi|567888786|ref|XP_006436915.1|3.709e-5570.34hypothetical protein CICLE_v10032815mg [Citrus cle... [more]
gi|1035901038|gb|OAY30638.1|7.381e-5569.49hypothetical protein MANES_14G047100 [Manihot escu... [more]
gi|449440514|ref|XP_004138029.1|1.070e-5470.34PREDICTED: ubiquitin-conjugating enzyme E2 27 [Cuc... [more]
gi|1035918421|gb|OAY48012.1|1.469e-5469.49hypothetical protein MANES_06G124300 [Manihot escu... [more]
gi|567181034|ref|XP_006402053.1|2.232e-5470.34hypothetical protein EUTSA_v10014747mg [Eutrema sa... [more]
gi|645268452|ref|XP_008239533.1|2.450e-5471.43PREDICTED: ubiquitin-conjugating enzyme E2 27 [Pru... [more]
gi|848884945|ref|XP_012842730.1|2.918e-5470.59PREDICTED: ubiquitin-conjugating enzyme E2 27 [Ery... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9609rna9609Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications