EWM21143.1, cds9530 (CDS) Nannochloropsis gaditana

Overview
NameEWM21143.1
Unique Namecds9530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:172895..173317 +
Alignment locationKK037254.1:173800..173826 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21143.1
Productheat domain-containing protein
Orig transcript idgnl|cribi|Naga_100319g1.4365.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:172895..173317 +
KK037254.1supercontigKK037254.1:173800..173826 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR026827ECM29/GCN1
IPR024372Proteasome_stabil_ECM29
IPR011989ARM-like
Homology
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|585101211|gb|EWM21143.1| (heat domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 303.138 bits (775), Expect = 3.223e-104
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVALRDPRQGAS 149
            MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVALRDPRQGAS
Sbjct:    1 MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVALRDPRQGAS 149          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|553186496|ref|XP_005854430.1| (heat domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294629|gb|EKU21929.1| heat domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 287.73 bits (735), Expect = 2.171e-96
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVAL 141
            MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVAL
Sbjct:   39 MASPSGPTRDDLDKLLFRLVMAEDSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKPFGRHQVAL 179          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|1197681164|ref|XP_021136457.1| (proteasome-associated protein ECM29 homolog [Columba livia])

HSP 1 Score: 79.337 bits (194), Expect = 3.177e-16
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:   10 DDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            D L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    4 DQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQ-EGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPSAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 120          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|676271764|gb|KFO26732.1| (Proteasome-associated protein ECM29 like protein [Fukomys damarensis])

HSP 1 Score: 83.1889 bits (204), Expect = 1.040e-15
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 0
Query:    1 MASPSGPTRDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            MAS  G + D L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    1 MASMVGRSVDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 126          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|955501692|ref|XP_014637550.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Ceratotherium simum simum])

HSP 1 Score: 81.2629 bits (199), Expect = 4.340e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 RDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            RD L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    7 RDQLERVFLRLGHAETDEQLQSIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 124          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|26334583|dbj|BAC30992.1| (unnamed protein product [Mus musculus])

HSP 1 Score: 80.4925 bits (197), Expect = 4.346e-15
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 0
Query:    5 SGPTRDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            +G   D L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    3 TGSDSDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 124          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|148670274|gb|EDL02221.1| (expressed sequence AI314180, isoform CRA_b, partial [Mus musculus])

HSP 1 Score: 81.2629 bits (199), Expect = 4.555e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 RDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            RD L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    8 RDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 125          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|1016692393|ref|XP_016069196.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X3 [Miniopterus natalensis])

HSP 1 Score: 81.2629 bits (199), Expect = 4.800e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 RDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            RD L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    7 RDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPIETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 124          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|744542528|ref|XP_010987065.1| (PREDICTED: proteasome-associated protein ECM29 homolog [Camelus dromedarius])

HSP 1 Score: 81.2629 bits (199), Expect = 4.932e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 RDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            RD L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    7 RDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 124          
BLAST of EWM21143.1 vs. NCBI_GenBank
Match: gi|1131295614|ref|XP_019822275.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Bos indicus])

HSP 1 Score: 81.2629 bits (199), Expect = 5.078e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 RDDLDKLLFRLVMAE-DSRIEGLIRLHLPMLMDLMSTTSDEGIRNKVVECCSHLLKRLRADNKLQVPCDVLLEKARSPVNGAFTKNFALVFLEIGCPRLPAEAKNALGWALLVGLAAEGTADEAKP 133
            RD L+++  RL  AE D +++ +I   LP ++  +S+T  EG+R KV+E   HL KR+++  K+Q+P + LL + + P   +F  NF ++++++G PRLP E +  L   LL       TA E KP
Sbjct:    7 RDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSST-QEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLL-------TAMEGKP 124          
The following BLAST results are available for this feature:
BLAST of EWM21143.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101211|gb|EWM21143.1|3.223e-104100.00heat domain-containing protein [Nannochloropsis ga... [more]
gi|553186496|ref|XP_005854430.1|2.171e-96100.00heat domain-containing protein, partial [Nannochlo... [more]
gi|1197681164|ref|XP_021136457.1|3.177e-1636.00proteasome-associated protein ECM29 homolog [Colum... [more]
gi|676271764|gb|KFO26732.1|1.040e-1536.57Proteasome-associated protein ECM29 like protein [... [more]
gi|955501692|ref|XP_014637550.1|4.340e-1536.51PREDICTED: proteasome-associated protein ECM29 hom... [more]
gi|26334583|dbj|BAC30992.1|4.346e-1535.38unnamed protein product [Mus musculus][more]
gi|148670274|gb|EDL02221.1|4.555e-1536.51expressed sequence AI314180, isoform CRA_b, partia... [more]
gi|1016692393|ref|XP_016069196.1|4.800e-1536.51PREDICTED: proteasome-associated protein ECM29 hom... [more]
gi|744542528|ref|XP_010987065.1|4.932e-1536.51PREDICTED: proteasome-associated protein ECM29 hom... [more]
gi|1131295614|ref|XP_019822275.1|5.078e-1536.51PREDICTED: proteasome-associated protein ECM29 hom... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9561rna9561Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications