EWM29720.1, cds953 (CDS) Nannochloropsis gaditana

Overview
NameEWM29720.1
Unique Namecds953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:820175..820177 +
Alignment locationCM002456.1:820234..820869 +
Alignment locationCM002456.1:820913..820954 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29720.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102486g1.7184.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:820175..820177 +
CM002456.1supercontigCM002456.1:820234..820869 +
CM002456.1supercontigCM002456.1:820913..820954 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29720.1 vs. NCBI_GenBank
Match: gi|585112299|gb|EWM29720.1| (hypothetical protein Naga_102486g1 [Nannochloropsis gaditana])

HSP 1 Score: 451.055 bits (1159), Expect = 3.037e-160
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 
Query:    1 MSFPWSIRSENSSDEIVFEVIWEEVATSPGSKSDATLFLGVTEGSREQLLRISSEMASVTLVEQCSCEHLEAMDCTRETVREYRADLTNAVHMAELTSLESWTAVVLLPSDKSMMIRQSLALVKGALSPSAGKRSVSSLWFVSAGALPVGEESVKDEASARQSWLSGFVKTVGIEHAELGVRHVDVRSDDDGVIDDISHLLGGAMSLPEKEMERARSRSLLRSTLG 226
            MSFPWSIRSENSSDEIVFEVIWEEVATSPGSKSDATLFLGVTEGSREQLLRISSEMASVTLVEQCSCEHLEAMDCTRETVREYRADLTNAVHMAELTSLESWTAVVLLPSDKSMMIRQSLALVKGALSPSAGKRSVSSLWFVSAGALPVGEESVKDEASARQSWLSGFVKTVGIEHAELGVRHVDVRSDDDGVIDDISHLLGGAMSLPEKEMERARSRSLLRSTLG
Sbjct:    1 MSFPWSIRSENSSDEIVFEVIWEEVATSPGSKSDATLFLGVTEGSREQLLRISSEMASVTLVEQCSCEHLEAMDCTRETVREYRADLTNAVHMAELTSLESWTAVVLLPSDKSMMIRQSLALVKGALSPSAGKRSVSSLWFVSAGALPVGEESVKDEASARQSWLSGFVKTVGIEHAELGVRHVDVRSDDDGVIDDISHLLGGAMSLPEKEMERARSRSLLRSTLG 226
[Close]
BLAST of EWM29720.1 vs. NCBI_GenBank
Match: gi|585099564|gb|EWM20163.1| (polyketide synthase [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 1.265e-11
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 0 
Query:   82 EYRADLTNAVHMAELTSLESWTAVV---LLPSDK---SMMIRQSLALVKGALSPSAGKRSVSSLWFVSAGALPVGEESVKDEASARQSWLSGFVKTVGIEHAELGVRHVDVRSD---DDGVIDDISHLLGGAMSLPEKEME 213
            E  ADLTNAV + ++ S   W+ V+   LL  DK   S +  + LAL  GAL     K    +LW V+ GA  VG    ++     QSW+SG+ K+V +EH E GV HVD+ +D     G+   ++ LL G   LP  E+E
Sbjct:  171 ESYADLTNAVCLGKMLSAVDWSGVLYCGLLSEDKGERSELFARVLALTHGALRIEE-KPHPMNLWLVTQGAQDVGG-GCRELKHTCQSWVSGYAKSVKLEHPEAGVVHVDLDADMAPGAGIAQQLAGLLSGQTKLPTTEVE 309
The following BLAST results are available for this feature:
BLAST of EWM29720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112299|gb|EWM29720.1|3.037e-160100.00hypothetical protein Naga_102486g1 [Nannochloropsi... [more]
gi|585099564|gb|EWM20163.1|1.265e-1138.30polyketide synthase [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna953rna953Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications