EWM21163.1, cds9513 (CDS) Nannochloropsis gaditana

Overview
NameEWM21163.1
Unique Namecds9513
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:136573..137082 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21163.1
Productcytosine deaminase
Orig transcript idgnl|cribi|Naga_100108g12.7748.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:136573..137082 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|585101233|gb|EWM21163.1| (cytosine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 349.747 bits (896), Expect = 4.317e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MATQKPQPATREKENEDDIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGEPSE 169
            MATQKPQPATREKENEDDIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGEPSE
Sbjct:    1 MATQKPQPATREKENEDDIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGEPSE 169          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1207201469|ref|WP_087937687.1| (tRNA-specific adenosine deaminase [Algoriphagus faecimaris] >gi|1086808072|emb|SDC51609.1| cytosine deaminase [Algoriphagus faecimaris])

HSP 1 Score: 207.994 bits (528), Expect = 2.555e-66
Identity = 97/150 (64.67%), Postives = 123/150 (82.00%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGEP 167
            D YL+ A+ EAK GL+EGGIPIG+VLVH+G      +LG GHN+RVQ+KS  LHGEMD LENAGR PASVY++  +YTTLSPC MC+GAILL+GIP+VV+GEN+TF+G+E+ LR NGVEV+VV D +CV +M+EF+ ++  LW EDIGEP
Sbjct:    2 DQYLEAAINEAKTGLHEGGIPIGSVLVHQG-----KILGKGHNKRVQQKSVTLHGEMDALENAGRQPASVYQESVLYTTLSPCPMCTGAILLYGIPKVVIGENRTFMGSEKLLRENGVEVVVVDDPTCVKMMEEFISKNPSLWNEDIGEP 146          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|501521973|ref|WP_012529910.1| (tRNA-specific adenosine deaminase [Geobacter bemidjiensis] >gi|197087227|gb|ACH38498.1| zinc-dependent cytosine deaminase [Geobacter bemidjiensis Bem])

HSP 1 Score: 206.838 bits (525), Expect = 6.342e-66
Identity = 98/148 (66.22%), Postives = 118/148 (79.73%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIG 165
            DIY+Q A+EEAK GL EGGIPIG+VLVH+G      +LG GHN+RVQK S +LHGEMD LENAGR PA VYR+  +YTTLSPCSMCSGAILL+GIPRVV+GEN TF G EE LR++GV+V V+QD  C+++M+ F+ E   LW EDIG
Sbjct:    2 DIYMQSAIEEAKKGLGEGGIPIGSVLVHKGL-----ILGRGHNRRVQKGSSILHGEMDALENAGRLPAQVYRESVLYTTLSPCSMCSGAILLYGIPRVVIGENSTFTGEEELLRSHGVQVDVLQDQECISLMRTFIEEKPELWNEDIG 144          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1086140039|emb|SDB29410.1| (cytosine deaminase [Idiomarina indica])

HSP 1 Score: 205.682 bits (522), Expect = 1.959e-65
Identity = 94/149 (63.09%), Postives = 123/149 (82.55%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGE 166
            D ++Q A+ EA++GL EGG+PIG+VLVH+G      ++G GHN+R+Q+ SP+LHGEMD L+NAGR PA VYR+CT+YTTLSPC MCSGAI L+GIPRVVVGENQTF+GAEE LR  GV+V+V+QD +C+ +M+ F+++H  LW EDIGE
Sbjct:    2 DEFMQAAIAEAELGLQEGGVPIGSVLVHQGK-----IIGRGHNRRMQQGSPILHGEMDALQNAGRQPAHVYRECTIYTTLSPCCMCSGAIELYGIPRVVVGENQTFMGAEERLRKAGVDVVVLQDETCIRLMETFIQQHPELWNEDIGE 145          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1209283215|ref|WP_088330072.1| (tRNA-specific adenosine deaminase [Lacimicrobium sp. SS2-24])

HSP 1 Score: 205.682 bits (522), Expect = 2.439e-65
Identity = 96/149 (64.43%), Postives = 124/149 (83.22%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGE 166
            D++L+ A+E+A++GL EGGIPIG+VLVHEG      +LG GHN+RVQ+ S +LHGEMD LE AGR PASVYR+ T+YTTLSPCSMCSGAILL+GIP+VV+GENQTFLG E  L++ GV++ VVQD +C+A+M+EF++ +  LW EDIGE
Sbjct:    2 DVFLEAAIEQARLGLAEGGIPIGSVLVHEGK-----ILGAGHNRRVQQGSAILHGEMDALEQAGRHPASVYRESTLYTTLSPCSMCSGAILLYGIPKVVIGENQTFLGEEALLQSRGVQLEVVQDKTCIALMEEFIQRNPELWFEDIGE 145          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1011634279|ref|WP_062484357.1| (tRNA-specific adenosine deaminase [Lacimicrobium alkaliphilum] >gi|962034216|gb|ALT00531.1| cytidine deaminase [Lacimicrobium alkaliphilum])

HSP 1 Score: 204.527 bits (519), Expect = 5.366e-65
Identity = 94/149 (63.09%), Postives = 125/149 (83.89%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGE 166
            D++L+ A+E+A++GL EGGIPIG+VLVH+G      +LG GHN+RVQ+ S +LHGEMD LE AGR PASVYR+ T+YTTLSPCSMC+GAILL+GIP+VV+GENQTF+G EE L++ GV++ VVQD +C+A+M+EF++ +  LW EDIGE
Sbjct:    2 DVFLEAAIEQARLGLAEGGIPIGSVLVHDGK-----ILGAGHNRRVQQGSAILHGEMDALEQAGRHPASVYRESTLYTTLSPCSMCTGAILLYGIPKVVIGENQTFMGEEELLQSRGVKLQVVQDKTCIALMEEFIQRNPDLWFEDIGE 145          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1057006522|ref|WP_068418038.1| (tRNA-specific adenosine deaminase [Roseivirga echinicomitans] >gi|1005889405|gb|KYG73060.1| cytidine deaminase [Roseivirga echinicomitans])

HSP 1 Score: 204.527 bits (519), Expect = 5.921e-65
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGEP 167
            D YL +A+ +AK+GL EGGIPIG+VLVH G      ++G GHN+RVQ+KS VLHGEMD LENAGR PASVYR   +YTTLSPC MC+GAILL+GIP+VV+GENQTF+G+E+ L  NGVEV++  +A C+ +M++F+  +  LW EDIGEP
Sbjct:    2 DKYLNEAINQAKIGLEEGGIPIGSVLVHNG-----QIIGKGHNKRVQQKSVVLHGEMDALENAGRQPASVYRASVLYTTLSPCPMCTGAILLYGIPKVVIGENQTFMGSEKLLEENGVEVVIENNAQCIKMMQDFIETNPTLWNEDIGEP 146          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|891197725|ref|WP_048919556.1| (tRNA-specific adenosine deaminase [Rufibacter sp. DG31D] >gi|887499054|gb|AKQ44763.1| cytidine deaminase [Rufibacter sp. DG31D])

HSP 1 Score: 204.527 bits (519), Expect = 6.254e-65
Identity = 96/148 (64.86%), Postives = 119/148 (80.41%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIG 165
            D ++Q AL+EAK G  EGGIPIG+VLVH+G      ++G GHN+RVQ+ S +LHGEMD LENAGR PASVYR+CT+YTTLSPCSMCSG ILL+GIP+VVVGEN+TFLG EE LR+ GV+V VV D  C ++M++F++E   LW EDIG
Sbjct:    3 DQFMQAALDEAKKGYAEGGIPIGSVLVHQG-----KIIGRGHNKRVQEGSAILHGEMDALENAGRQPASVYRECTIYTTLSPCSMCSGTILLYGIPKVVVGENKTFLGEEELLRSRGVDVTVVDDPECYSLMQQFIQEKPALWNEDIG 145          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|1120223838|ref|WP_073091138.1| (tRNA-specific adenosine deaminase [Cyclobacterium lianum] >gi|1110440143|emb|SHM43522.1| cytosine deaminase [Cyclobacterium lianum])

HSP 1 Score: 204.142 bits (518), Expect = 9.277e-65
Identity = 93/149 (62.42%), Postives = 121/149 (81.21%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIGE 166
            D ++Q A+EEA+ G++ GGIPIG+VLV+E       ++G GHNQRVQK S +LHGEMD LENAGR PA+VY+KC +YTTLSPC MCSGAILL+GIP+VV+GEN T++GAE  LR NGVE+ +VQD+ C A+M+ F++E+  LW+EDIGE
Sbjct:    2 DQFMQAAIEEAQSGMHSGGIPIGSVLVYE-----NEIIGRGHNQRVQKGSTILHGEMDALENAGRQPAAVYKKCVLYTTLSPCPMCSGAILLYGIPKVVIGENLTYMGAETLLRENGVELTIVQDSRCQALMRRFIQENPALWQEDIGE 145          
BLAST of EWM21163.1 vs. NCBI_GenBank
Match: gi|670485878|ref|WP_031434130.1| (tRNA-specific adenosine deaminase [Methylomarinum vadi])

HSP 1 Score: 203.371 bits (516), Expect = 1.932e-64
Identity = 96/148 (64.86%), Postives = 119/148 (80.41%), Query Frame = 0
Query:   18 DIYLQQALEEAKVGLNEGGIPIGAVLVHEGTDGVRHVLGMGHNQRVQKKSPVLHGEMDCLENAGRCPASVYRKCTMYTTLSPCSMCSGAILLFGIPRVVVGENQTFLGAEEHLRANGVEVIVVQDASCVAIMKEFVREHKVLWEEDIG 165
            D +++ A+EEA+ GL EGGIPIG+VLVH+G      ++G GHN+RVQK S VLHGEMD LENAGR PASVYR+CT+YTTLSPCSMC+GAILL+GIP+VV+GENQTF G E+ LR+NGV V V+Q+ SC+ +MK F+     LW EDIG
Sbjct:    3 DQFMKAAIEEAETGLREGGIPIGSVLVHQG-----KIIGRGHNRRVQKGSVVLHGEMDALENAGRQPASVYRECTLYTTLSPCSMCTGAILLYGIPKVVIGENQTFKGEEDLLRSNGVAVEVLQEPSCIDLMKRFIEASSELWNEDIG 145          
The following BLAST results are available for this feature:
BLAST of EWM21163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101233|gb|EWM21163.1|4.317e-122100.00cytosine deaminase [Nannochloropsis gaditana][more]
gi|1207201469|ref|WP_087937687.1|2.555e-6664.67tRNA-specific adenosine deaminase [Algoriphagus fa... [more]
gi|501521973|ref|WP_012529910.1|6.342e-6666.22tRNA-specific adenosine deaminase [Geobacter bemid... [more]
gi|1086140039|emb|SDB29410.1|1.959e-6563.09cytosine deaminase [Idiomarina indica][more]
gi|1209283215|ref|WP_088330072.1|2.439e-6564.43tRNA-specific adenosine deaminase [Lacimicrobium s... [more]
gi|1011634279|ref|WP_062484357.1|5.366e-6563.09tRNA-specific adenosine deaminase [Lacimicrobium a... [more]
gi|1057006522|ref|WP_068418038.1|5.921e-6562.00tRNA-specific adenosine deaminase [Roseivirga echi... [more]
gi|891197725|ref|WP_048919556.1|6.254e-6564.86tRNA-specific adenosine deaminase [Rufibacter sp. ... [more]
gi|1120223838|ref|WP_073091138.1|9.277e-6562.42tRNA-specific adenosine deaminase [Cyclobacterium ... [more]
gi|670485878|ref|WP_031434130.1|1.932e-6464.86tRNA-specific adenosine deaminase [Methylomarinum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9544rna9544Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications