EWM29744.1, cds951 (CDS) Nannochloropsis gaditana

Overview
NameEWM29744.1
Unique Namecds951
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:813109..813140 -
Alignment locationCM002456.1:812798..812915 -
Alignment locationCM002456.1:812635..812724 -
Alignment locationCM002456.1:812430..812561 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29744.1
Productnuclear cap-binding protein subunit 2
Orig transcript idgnl|cribi|Naga_100022g67.843.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:813109..813140 -
CM002456.1supercontigCM002456.1:812798..812915 -
CM002456.1supercontigCM002456.1:812635..812724 -
CM002456.1supercontigCM002456.1:812430..812561 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005846nuclear cap binding complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0045292mRNA cis splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000339RNA cap binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027157NCBP2
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|585112324|gb|EWM29744.1| (nuclear cap-binding protein subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 254.988 bits (650), Expect = 5.531e-86
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 
Query:    1 MRVERGYQSGCVFINYCRFLKAIVMAELFDTDPQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEWVAFFIFFFELGILLSRY 123
            MRVERGYQSGCVFINYCRFLKAIVMAELFDTDPQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEWVAFFIFFFELGILLSRY
Sbjct:    1 MRVERGYQSGCVFINYCRFLKAIVMAELFDTDPQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEWVAFFIFFFELGILLSRY 123
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|301103105|ref|XP_002900639.1| (elicitin-like protein [Phytophthora infestans T30-4] >gi|262101902|gb|EEY59954.1| elicitin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 99.7525 bits (247), Expect = 1.231e-22
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:   19 FLKAIVMAELF----DTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEWVAF 109
            F    +MAEL+    D +      P    YWDRK F+ F +Q +++  +  +Y+GNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+ A 
Sbjct:  111 FYPPSIMAELYAEVADEEQRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSAH 211
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|953500890|emb|CEG37923.1| (rna-binding region rnp-1 domain-containing protein [Plasmopara halstedii])

HSP 1 Score: 97.8265 bits (242), Expect = 1.270e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   22 AIVMAELFDTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A + AE+ D +      P    YWDRK ++ F +Q +S+  +  +Y+GNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+
Sbjct:    2 AELYAEVADEERRLERGPSQRQYWDRKTYSSFDEQQRSIERSSTLYVGNLSFFTSEAQIYELFSRVGYVKRVIMGLDRFKKTPCGFCFVEY 92
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|1214677151|gb|OWY97982.1| (Elicitin [Phytophthora megakarya])

HSP 1 Score: 97.0561 bits (240), Expect = 1.404e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   22 AIVMAELFDTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A + AE+ D +      P    YWDRK F+ F +Q +++  +  +Y+GNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+
Sbjct:    2 AELYAEVADEEQRLARGPSQRQYWDRKTFSSFAEQQRAMTRSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEY 92
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|566023329|gb|ETI46240.1| (hypothetical protein F443_09354 [Phytophthora parasitica P1569] >gi|567960619|gb|ETK86171.1| hypothetical protein L915_09174 [Phytophthora parasitica] >gi|567989335|gb|ETL39595.1| hypothetical protein L916_09084 [Phytophthora parasitica] >gi|568018546|gb|ETL92716.1| hypothetical protein L917_09018 [Phytophthora parasitica] >gi|568048996|gb|ETM46017.1| hypothetical protein L914_09038 [Phytophthora parasitica] >gi|570950786|gb|ETP16043.1| hypothetical protein F441_09311 [Phytophthora parasitica CJ01A1] >gi|570984541|gb|ETP44099.1| hypothetical protein F442_09274 [Phytophthora parasitica P10297] >gi|970660600|gb|KUF98135.1| hypothetical protein AM588_10007456 [Phytophthora nicotianae] >gi|970665514|gb|KUG02143.1| Elicitin protein [Phytophthora nicotianae])

HSP 1 Score: 97.4413 bits (241), Expect = 1.567e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   22 AIVMAELFDTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A + AE+ D +      P    YWDRK F+ F +Q +++  +  +Y+GNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+
Sbjct:    2 AELYAEVADEEQRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEY 92
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|675194763|ref|XP_008906266.1| (hypothetical protein PPTG_12289 [Phytophthora parasitica INRA-310] >gi|568093727|gb|ETN08518.1| hypothetical protein PPTG_12289 [Phytophthora parasitica INRA-310] >gi|570326954|gb|ETO74902.1| hypothetical protein F444_09438 [Phytophthora parasitica P1976])

HSP 1 Score: 97.4413 bits (241), Expect = 1.636e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   22 AIVMAELFDTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A + AE+ D +      P    YWDRK F+ F +Q +++  +  +Y+GNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+
Sbjct:    2 AELYAEVADEEQRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEY 92
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|695436058|ref|XP_009531876.1| (hypothetical protein PHYSODRAFT_303573 [Phytophthora sojae] >gi|348671723|gb|EGZ11543.1| hypothetical protein PHYSODRAFT_303573 [Phytophthora sojae])

HSP 1 Score: 97.4413 bits (241), Expect = 2.138e-22
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   22 AIVMAELFDTD------PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A + AE+ D +      P    YWDRK F+ F +Q +++  +  +YIGNLSF T+E QIY+ FS++G +KRVIMGL+RF K PCGFCF+E+
Sbjct:    2 AELYAEVADEEQRLARGPSQRQYWDRKTFSSFAEQQRAMARSSTLYIGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEY 92
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|698822049|ref|XP_009844053.1| (hypothetical protein H257_17086 [Aphanomyces astaci] >gi|574100953|gb|ETV66524.1| hypothetical protein H257_17086 [Aphanomyces astaci])

HSP 1 Score: 96.2857 bits (238), Expect = 3.036e-22
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:   26 AELFDTD-PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A L DT  P+   YWDR+ FT  ++Q +++R +  +Y+GNLSF T+E QIY+ FS +G +K VIMGLN+ TK PCGFCF+E+
Sbjct:    5 ASLADTGGPKKKEYWDRRTFTSLEEQQEAMRNSSTLYVGNLSFFTSETQIYELFSVVGPVKSVIMGLNQLTKTPCGFCFVEY 86
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|673032846|ref|XP_008870384.1| (hypothetical protein H310_06935 [Aphanomyces invadans] >gi|574474384|gb|ETW01386.1| hypothetical protein H310_06935 [Aphanomyces invadans])

HSP 1 Score: 93.9745 bits (232), Expect = 2.903e-21
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 0 
Query:   26 AELFDTD-PQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEW 106
            A L DT  P+   YWDR+ +   ++Q +++R +  +Y+GNLSF T+E QIY+ FS +G +K VIMGLN+ TK PCGFCF+E+
Sbjct:    5 ASLADTGGPKKKEYWDRRTYASLEEQQEAMRNSSTLYVGNLSFFTSETQIYELFSVVGPVKSVIMGLNQLTKTPCGFCFVEY 86
[Close]
BLAST of EWM29744.1 vs. NCBI_GenBank
Match: gi|325188042|emb|CCA22585.1| (elicitinlike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 6.393e-20
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:   38 YWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEWVAF 109
            YWDRK +   ++Q  +++ +  +YIGNLSF T+E Q+ + FS++G IKRVIMGL+RF K PCGFCF+E+ + 
Sbjct:   23 YWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSH 94
The following BLAST results are available for this feature:
BLAST of EWM29744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112324|gb|EWM29744.1|5.531e-86100.00nuclear cap-binding protein subunit 2 [Nannochloro... [more]
gi|301103105|ref|XP_002900639.1|1.231e-2246.53elicitin-like protein [Phytophthora infestans T30-... [more]
gi|953500890|emb|CEG37923.1|1.270e-2248.35rna-binding region rnp-1 domain-containing protein... [more]
gi|1214677151|gb|OWY97982.1|1.404e-2248.35Elicitin [Phytophthora megakarya][more]
gi|566023329|gb|ETI46240.1|1.567e-2248.35hypothetical protein F443_09354 [Phytophthora para... [more]
gi|675194763|ref|XP_008906266.1|1.636e-2248.35hypothetical protein PPTG_12289 [Phytophthora para... [more]
gi|695436058|ref|XP_009531876.1|2.138e-2249.45hypothetical protein PHYSODRAFT_303573 [Phytophtho... [more]
gi|698822049|ref|XP_009844053.1|3.036e-2252.44hypothetical protein H257_17086 [Aphanomyces astac... [more]
gi|673032846|ref|XP_008870384.1|2.903e-2150.00hypothetical protein H310_06935 [Aphanomyces invad... [more]
gi|325188042|emb|CCA22585.1|6.393e-2051.39elicitinlike protein putative [Albugo laibachii Nc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna951rna951Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications